Jakob Skou Pedersen (Jakob S Pedersen)

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 24

Top Venues

Nature communications

eLife

Genome biology

NPJ genomic medicine

This page only lists publications with an associated author ORCID identifier.

Publications

Trine Line Hauge Okholm, Andreas Bjerregaard Kamstrup, Morten Muhlig Nielsen, Anne Kruse Hollensen, Mette Laugesen Graversgaard, Matilde Helbo Sørensen, Lasse Sommer Kristensen, Søren Vang, Samuel S Park, Eugene Yeo, Lars Dyrskjøt, Jørgen Kjems, Jakob Skou Pedersen, Christian Kroun Damgaard
circHIPK3 nucleates IGF2BP2 and functions as a competing endogenous RNA. eLife 13 (2024)
Trine Line Hauge Okholm, Andreas Bjerregaard Kamstrup, Morten Muhlig Nielsen, Anne Kruse Hollensen, Mette Laugesen Graversgaard, Matilde Helbo Sørensen, Lasse Sommer Kristensen, Søren Vang, Samuel S Park, Eugene Yeo, Lars Dyrskjøt, Jørgen Kjems, Jakob Skou Pedersen, Christian Kroun Damgaard
circHIPK3 nucleates IGF2BP2 and functions as a competing endogenous RNA. eLife 13 (2024)
Trine Line Hauge Okholm, Andreas Bjerregaard Kamstrup, Morten Muhlig Nielsen, Anne Kruse Hollensen, Mette Laugesen Graversgaard, Matilde Helbo Sørensen, Lasse Sommer Kristensen, Søren Vang, Samuel S Park, Eugene Yeo, Lars Dyrskjøt, Jørgen Kjems, Jakob Skou Pedersen, Christian Kroun Damgaard
circHIPK3 nucleates IGF2BP2 and functions as a competing endogenous RNA. eLife 13 (2024)
Asta M Rasmussen, Trine Line Hauge Okholm, Michael Knudsen, Søren Vang, Lars Dyrskjøt, Thomas B Hansen, Jakob Skou Pedersen
Circular stable intronic RNAs possess distinct biological features and are deregulated in bladder cancer. NAR cancer 5 (3) (2023)
Martin Q Rasmussen, Gitte Tindbæk, Morten Muhlig Nielsen, Camilla Merrild, Torben Steiniche, Jakob Skou Pedersen, Søren K Moestrup, Søren E Degn, Mette Madsen
Epigenetic Silencing of LRP2 Is Associated with Dedifferentiation and Poor Survival in Multiple Solid Tumor Types. Cancers 15 (6) (2023)
Martin Q Rasmussen, Gitte Tindbæk, Morten Muhlig Nielsen, Camilla Merrild, Torben Steiniche, Jakob Skou Pedersen, Søren K Moestrup, Søren E Degn, Mette Madsen
Epigenetic Silencing of LRP2 Is Associated with Dedifferentiation and Poor Survival in Multiple Solid Tumor Types. Cancers 15 (6) (2023)
Mikkel H Christensen, Simon O Drue, Mads H Rasmussen, Amanda Frydendahl, Iben Lyskjær, Christina Demuth, Jesper Nors, Kåre A Gotschalck, Lene H Iversen, Claus L Andersen, Jakob Skou Pedersen
DREAMS: deep read-level error model for sequencing data applied to low-frequency variant calling and circulating tumor DNA detection. Genome biology 24 (1) (2023)
Mikkel H Christensen, Simon O Drue, Mads H Rasmussen, Amanda Frydendahl, Iben Lyskjær, Christina Demuth, Jesper Nors, Kåre A Gotschalck, Lene H Iversen, Claus L Andersen, Jakob Skou Pedersen
DREAMS: deep read-level error model for sequencing data applied to low-frequency variant calling and circulating tumor DNA detection. Genome biology 24 (1) (2023)
Mikkel H Christensen, Simon O Drue, Mads H Rasmussen, Amanda Frydendahl, Iben Lyskjær, Christina Demuth, Jesper Nors, Kåre A Gotschalck, Lene H Iversen, Claus L Andersen, Jakob Skou Pedersen
DREAMS: deep read-level error model for sequencing data applied to low-frequency variant calling and circulating tumor DNA detection. Genome biology 24 (1) (2023)
Mikkel H Christensen, Simon O Drue, Mads H Rasmussen, Amanda Frydendahl, Iben Lyskjær, Christina Demuth, Jesper Nors, Kåre A Gotschalck, Lene H Iversen, Claus L Andersen, Jakob Skou Pedersen
DREAMS: deep read-level error model for sequencing data applied to low-frequency variant calling and circulating tumor DNA detection. Genome biology 24 (1) (2023)
Simon Grund Sørensen, Amruta Shrikhande, Gustav Alexander Poulsgaard, Mikkel Hovden Christensen, Johanna Bertl, Britt Elmedal Laursen, Eva R Hoffmann, Jakob Skou Pedersen
Pan-cancer association of DNA repair deficiencies with whole-genome mutational patterns. eLife 12 (2023)
Gustav Alexander Poulsgaard, Simon Grund Sørensen, Randi Istrup Juul, Morten Muhlig Nielsen, Jakob Skou Pedersen
Sequence dependencies and mutation rates of localized mutational processes in cancer. Genome medicine 15 (1) (2023)
Ann Taber, Emil Christensen, Philippe Lamy, Iver Nordentoft, Frederik Prip, Sia Viborg Lindskrog, Karin Birkenkamp-Demtröder, Trine Line Hauge Okholm, Michael Knudsen, Jakob Skou Pedersen, Torben Steiniche, Mads Agerbæk, Jørgen Bjerggaard Jensen, Lars Dyrskjøt
Author Correction: Molecular correlates of cisplatin-based chemotherapy response in muscle invasive bladder cancer by integrated multi-omics analysis. Nature communications 13 (1) (2022)
Matthew A Reyna, David Haan, Marta Paczkowska, Lieven P C Verbeke, Miguel Vazquez, Alexandre Thiéry, Sergio Pulido-Tamayo, Jonathan Barenboim, Lina Wadi, Priyanka Dhingra, Raunak Shrestha, Gad A Getz, Michael S Lawrence, Jakob Skou Pedersen, Mark A Rubin, David A Wheeler, Søren Brunak, Jose M G Izarzugaza, Ekta Khurana, Kathleen Marchal, Christian von Mering, S Cenk Sahinalp, Alfonso Valencia, null null, Jüri Reimand, Joshua M Stuart, Benjamin J Raphael, null null
Author Correction: Pathway and network analysis of more than 2500 whole cancer genomes. Nature communications 13 (1) (2022)
Randi Istrup Juul, Morten Muhlig Nielsen, Malene Juul, Lars Feuerbach, Jakob Skou Pedersen
The landscape and driver potential of site-specific hotspots across cancer genomes. NPJ genomic medicine 6 (1) (2021)
Ann Taber, Emil Christensen, Philippe Lamy, Iver Nordentoft, Frederik Prip, Sia Viborg Lindskrog, Karin Birkenkamp-Demtröder, Trine Line Hauge Okholm, Michael Knudsen, Jakob Skou Pedersen, Torben Steiniche, Mads Agerbæk, Jørgen Bjerggaard Jensen, Lars Dyrskjøt
Molecular correlates of cisplatin-based chemotherapy response in muscle invasive bladder cancer by integrated multi-omics analysis. Nature communications 11 (1) (2020)
Matthew A Reyna, David Haan, Marta Paczkowska, Lieven P C Verbeke, Miguel Vazquez, Alexandre Thiéry, Sergio Pulido-Tamayo, Jonathan Barenboim, Lina Wadi, Priyanka Dhingra, Raunak Shrestha, Gad A Getz, Michael S Lawrence, Jakob Skou Pedersen, Mark A Rubin, David A Wheeler, Søren Brunak, Jose M G Izarzugaza, Ekta Khurana, Kathleen Marchal, Christian von Mering, S Cenk Sahinalp, Alfonso Valencia, null null, Jüri Reimand, Joshua M Stuart, Benjamin J Raphael, null null
Pathway and network analysis of more than 2500 whole cancer genomes. Nature communications 11 (1) (2020)
Emil Christensen, Iver Nordentoft, Søren Vang, Karin Birkenkamp-Demtröder, Jørgen Bjerggaard Jensen, Mads Agerbæk, Jakob Skou Pedersen, Lars Dyrskjøt
Optimized targeted sequencing of cell-free plasma DNA from bladder cancer patients. Scientific reports 8 (1) (2018)
Henrik Hornshøj, Morten Muhlig Nielsen, Nicholas A Sinnott-Armstrong, Michał P Świtnicki, Malene Juul, Tobias Madsen, Richard Sallari, Manolis Kellis, Torben Ørntoft, Asger Hobolth, Jakob Skou Pedersen
Pan-cancer screen for mutations in non-coding elements with conservation and cancer specificity reveals correlations with expression and survival. NPJ genomic medicine 3 (2018)
Anne Skakkebæk, Morten Muhlig Nielsen, Christian Trolle, Søren Vang, Henrik Hornshøj, Jakob Hedegaard, Mikkel Wallentin, Anders Bojesen, Jens Michael Hertz, Jens Fedder, John Rosendahl Østergaard, Jakob Skou Pedersen, Claus Højbjerg Gravholt
DNA hypermethylation and differential gene expression associated with Klinefelter syndrome. Scientific reports 8 (1) (2018)
Trine Line Hauge Okholm, Morten Muhlig Nielsen, Mark P Hamilton, Lise-Lotte Christensen, Søren Vang, Jakob Hedegaard, Thomas Birkballe Hansen, Jørgen Kjems, Lars Dyrskjøt, Jakob Skou Pedersen
Circular RNA expression is abundant and correlated to aggressiveness in early-stage bladder cancer. NPJ genomic medicine 2 (2017)
Malene Juul, Johanna Bertl, Qianyun Guo, Morten Muhlig Nielsen, Michał Świtnicki, Henrik Hornshøj, Tobias Madsen, Asger Hobolth, Jakob Skou Pedersen
Non-coding cancer driver candidates identified with a sample- and position-specific model of the somatic mutation rate. eLife 6 (2017)
Nkerorema Djodji Damas, Michela Marcatti, Christophe Côme, Lise Lotte Christensen, Morten Muhlig Nielsen, Roland Baumgartner, Helene Maria Gylling, Giulia Maglieri, Carsten Friis Rundsten, Stefan E Seemann, Nicolas Rapin, Simon Thézenas, Søren Vang, Torben Ørntoft, Claus Lindbjerg Andersen, Jakob Skou Pedersen, Anders Henrik Lund
SNHG5 promotes colorectal cancer cell survival by counteracting STAU1-mediated mRNA destabilization. Nature communications 7 (2016)
Mads Heilskov Rasmussen, Iben Lyskjær, Rosa Rakownikow Jersie-Christensen, Line Schmidt Tarpgaard, Bjarke Primdal-Bengtson, Morten Muhlig Nielsen, Jakob Skou Pedersen, Tine Plato Hansen, Flemming Hansen, Jesper Velgaard Olsen, Per Pfeiffer, Torben Falck Ørntoft, Claus Lindbjerg Andersen
miR-625-3p regulates oxaliplatin resistance by targeting MAP2K6-p38 signalling in human colorectal adenocarcinoma cells. Nature communications 7 (2016)

Jakob Skou Pedersen.css-eqlu8i{font-size:small;padding-left:4px;} (Jakob S Pedersen)

Publication Activity (10 Years)

Top Topics

Top Venues

Jakob Skou Pedersen (Jakob S Pedersen)