Jakub R Kaczmarzyk

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 16

Top Topics

Convolutional Neural Network

Cerebrospinal Fluid

Top Venues

NPJ precision oncology

Scientific reports

Addiction biology

This page only lists publications with an associated author ORCID identifier.

Publications

Jakub R Kaczmarzyk, Alan O'Callaghan, Fiona Inglis, Swarad Gat, Tahsin Kurc, Rajarsi Gupta, Erich Bremer, Peter Bankhead, Joseph Saltz
Open and reusable deep learning for pathology with WSInfer and QuPath. NPJ precision oncology 8 (1) (2024)
Angela I Renton, Thuy T Dao, Tom Johnstone, Oren Civier, Ryan P Sullivan, David J White, Paris Lyons, Benjamin M Slade, David F Abbott, Toluwani J Amos, Saskia Bollmann, Andy Botting, Megan E J Campbell, Jeryn Chang, Thomas G Close, Monika Dörig, Korbinian Eckstein, Gary F Egan, Stefanie Evas, Guillaume Flandin, Kelly G Garner, Marta I Garrido, Satrajit S Ghosh, Martin Grignard, Yaroslav O Halchenko, Anthony J Hannan, Anibal S Heinsfeld, Laurentius Huber, Matthew E Hughes, Jakub R Kaczmarzyk, Lars Kasper, Levin Kuhlmann, Kexin Lou, Yorguin-Jose Mantilla-Ramos, Jason B Mattingley, Michael Lukas Meier, Jo Morris, Akshaiy Narayanan, Franco Pestilli, Aina Puce, Fernanda Lenita Ribeiro, Nigel C Rogasch, Chris Rorden, Mark M Schira, Thomas B Shaw, Paul F Sowman, Gershon Spitz, Ashley Wilton Stewart, Xincheng Ye, Judy D Zhu, Aswin Narayanan, Steffen Bollmann
Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging. Nature methods 21 (5) (2024)
Jakub R Kaczmarzyk, Alan O'Callaghan, Fiona Inglis, Swarad Gat, Tahsin Kurc, Rajarsi Gupta, Erich Bremer, Peter Bankhead, Joseph Saltz
Open and reusable deep learning for pathology with WSInfer and QuPath. NPJ precision oncology 8 (1) (2024)
Jakub R Kaczmarzyk, Alan O'Callaghan, Fiona Inglis, Swarad Gat, Tahsin Kurc, Rajarsi Gupta, Erich Bremer, Peter Bankhead, Joseph Saltz
Open and reusable deep learning for pathology with WSInfer and QuPath. NPJ precision oncology 8 (1) (2024)
Angela I Renton, Thuy T Dao, Tom Johnstone, Oren Civier, Ryan P Sullivan, David J White, Paris Lyons, Benjamin M Slade, David F Abbott, Toluwani J Amos, Saskia Bollmann, Andy Botting, Megan E J Campbell, Jeryn Chang, Thomas G Close, Monika Dörig, Korbinian Eckstein, Gary F Egan, Stefanie Evas, Guillaume Flandin, Kelly G Garner, Marta I Garrido, Satrajit S Ghosh, Martin Grignard, Yaroslav O Halchenko, Anthony J Hannan, Anibal S Heinsfeld, Laurentius Huber, Matthew E Hughes, Jakub R Kaczmarzyk, Lars Kasper, Levin Kuhlmann, Kexin Lou, Yorguin-Jose Mantilla-Ramos, Jason B Mattingley, Michael Lukas Meier, Jo Morris, Akshaiy Narayanan, Franco Pestilli, Aina Puce, Fernanda Lenita Ribeiro, Nigel C Rogasch, Chris Rorden, Mark M Schira, Thomas B Shaw, Paul F Sowman, Gershon Spitz, Ashley Wilton Stewart, Xincheng Ye, Judy D Zhu, Aswin Narayanan, Steffen Bollmann
Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging. Nature methods 21 (5) (2024)
Jakub R Kaczmarzyk, Alan O'Callaghan, Fiona Inglis, Swarad Gat, Tahsin Kurc, Rajarsi Gupta, Erich Bremer, Peter Bankhead, Joseph Saltz
Open and reusable deep learning for pathology with WSInfer and QuPath. NPJ precision oncology 8 (1) (2024)
Angela I Renton, Thuy T Dao, Tom Johnstone, Oren Civier, Ryan P Sullivan, David J White, Paris Lyons, Benjamin M Slade, David F Abbott, Toluwani J Amos, Saskia Bollmann, Andy Botting, Megan E J Campbell, Jeryn Chang, Thomas G Close, Monika Dörig, Korbinian Eckstein, Gary F Egan, Stefanie Evas, Guillaume Flandin, Kelly G Garner, Marta I Garrido, Satrajit S Ghosh, Martin Grignard, Yaroslav O Halchenko, Anthony J Hannan, Anibal S Heinsfeld, Laurentius Huber, Matthew E Hughes, Jakub R Kaczmarzyk, Lars Kasper, Levin Kuhlmann, Kexin Lou, Yorguin-Jose Mantilla-Ramos, Jason B Mattingley, Michael Lukas Meier, Jo Morris, Akshaiy Narayanan, Franco Pestilli, Aina Puce, Fernanda Lenita Ribeiro, Nigel C Rogasch, Chris Rorden, Mark M Schira, Thomas B Shaw, Paul F Sowman, Gershon Spitz, Ashley Wilton Stewart, Xincheng Ye, Judy D Zhu, Aswin Narayanan, Steffen Bollmann
Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging. Nature methods (2024)
Angela I Renton, Thuy T Dao, Tom Johnstone, Oren Civier, Ryan P Sullivan, David J White, Paris Lyons, Benjamin M Slade, David F Abbott, Toluwani J Amos, Saskia Bollmann, Andy Botting, Megan E J Campbell, Jeryn Chang, Thomas G Close, Monika Dörig, Korbinian Eckstein, Gary F Egan, Stefanie Evas, Guillaume Flandin, Kelly G Garner, Marta I Garrido, Satrajit S Ghosh, Martin Grignard, Yaroslav O Halchenko, Anthony J Hannan, Anibal S Heinsfeld, Laurentius Huber, Matthew E Hughes, Jakub R Kaczmarzyk, Lars Kasper, Levin Kuhlmann, Kexin Lou, Yorguin-Jose Mantilla-Ramos, Jason B Mattingley, Michael Lukas Meier, Jo Morris, Akshaiy Narayanan, Franco Pestilli, Aina Puce, Fernanda Lenita Ribeiro, Nigel C Rogasch, Chris Rorden, Mark M Schira, Thomas B Shaw, Paul F Sowman, Gershon Spitz, Ashley Wilton Stewart, Xincheng Ye, Judy D Zhu, Aswin Narayanan, Steffen Bollmann
Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging. Nature methods (2024)
Jakub R Kaczmarzyk, Alan O'Callaghan, Fiona Inglis, Swarad Gat, Tahsin Kurc, Rajarsi Gupta, Erich Bremer, Peter Bankhead, Joseph Saltz
Open and reusable deep learning for pathology with WSInfer and QuPath. NPJ precision oncology 8 (1) (2024)
Angela I Renton, Thuy T Dao, Tom Johnstone, Oren Civier, Ryan P Sullivan, David J White, Paris Lyons, Benjamin M Slade, David F Abbott, Toluwani J Amos, Saskia Bollmann, Andy Botting, Megan E J Campbell, Jeryn Chang, Thomas G Close, Monika Dörig, Korbinian Eckstein, Gary F Egan, Stefanie Evas, Guillaume Flandin, Kelly G Garner, Marta I Garrido, Satrajit S Ghosh, Martin Grignard, Yaroslav O Halchenko, Anthony J Hannan, Anibal S Heinsfeld, Laurentius Huber, Matthew E Hughes, Jakub R Kaczmarzyk, Lars Kasper, Levin Kuhlmann, Kexin Lou, Yorguin-Jose Mantilla-Ramos, Jason B Mattingley, Michael Lukas Meier, Jo Morris, Akshaiy Narayanan, Franco Pestilli, Aina Puce, Fernanda Lenita Ribeiro, Nigel C Rogasch, Chris Rorden, Mark M Schira, Thomas B Shaw, Paul F Sowman, Gershon Spitz, Ashley Wilton Stewart, Xincheng Ye, Judy D Zhu, Aswin Narayanan, Steffen Bollmann
Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging. Nature methods (2024)
Angela I Renton, Thuy T Dao, Tom Johnstone, Oren Civier, Ryan P Sullivan, David J White, Paris Lyons, Benjamin M Slade, David F Abbott, Toluwani J Amos, Saskia Bollmann, Andy Botting, Megan E J Campbell, Jeryn Chang, Thomas G Close, Monika Dörig, Korbinian Eckstein, Gary F Egan, Stefanie Evas, Guillaume Flandin, Kelly G Garner, Marta I Garrido, Satrajit S Ghosh, Martin Grignard, Yaroslav O Halchenko, Anthony J Hannan, Anibal S Heinsfeld, Laurentius Huber, Matthew E Hughes, Jakub R Kaczmarzyk, Lars Kasper, Levin Kuhlmann, Kexin Lou, Yorguin-Jose Mantilla-Ramos, Jason B Mattingley, Michael Lukas Meier, Jo Morris, Akshaiy Narayanan, Franco Pestilli, Aina Puce, Fernanda Lenita Ribeiro, Nigel C Rogasch, Chris Rorden, Mark M Schira, Thomas B Shaw, Paul F Sowman, Gershon Spitz, Ashley Wilton Stewart, Xincheng Ye, Judy D Zhu, Aswin Narayanan, Steffen Bollmann
Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging. Nature methods 21 (5) (2024)
Angela I Renton, Thuy T Dao, Tom Johnstone, Oren Civier, Ryan P Sullivan, David J White, Paris Lyons, Benjamin M Slade, David F Abbott, Toluwani J Amos, Saskia Bollmann, Andy Botting, Megan E J Campbell, Jeryn Chang, Thomas G Close, Monika Dörig, Korbinian Eckstein, Gary F Egan, Stefanie Evas, Guillaume Flandin, Kelly G Garner, Marta I Garrido, Satrajit S Ghosh, Martin Grignard, Yaroslav O Halchenko, Anthony J Hannan, Anibal S Heinsfeld, Laurentius Huber, Matthew E Hughes, Jakub R Kaczmarzyk, Lars Kasper, Levin Kuhlmann, Kexin Lou, Yorguin-Jose Mantilla-Ramos, Jason B Mattingley, Michael Lukas Meier, Jo Morris, Akshaiy Narayanan, Franco Pestilli, Aina Puce, Fernanda Lenita Ribeiro, Nigel C Rogasch, Chris Rorden, Mark M Schira, Thomas B Shaw, Paul F Sowman, Gershon Spitz, Ashley Wilton Stewart, Xincheng Ye, Judy D Zhu, Aswin Narayanan, Steffen Bollmann
Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging. Nature methods 21 (5) (2024)
Angela I Renton, Thuy T Dao, Tom Johnstone, Oren Civier, Ryan P Sullivan, David J White, Paris Lyons, Benjamin M Slade, David F Abbott, Toluwani J Amos, Saskia Bollmann, Andy Botting, Megan E J Campbell, Jeryn Chang, Thomas G Close, Monika Dörig, Korbinian Eckstein, Gary F Egan, Stefanie Evas, Guillaume Flandin, Kelly G Garner, Marta I Garrido, Satrajit S Ghosh, Martin Grignard, Yaroslav O Halchenko, Anthony J Hannan, Anibal S Heinsfeld, Laurentius Huber, Matthew E Hughes, Jakub R Kaczmarzyk, Lars Kasper, Levin Kuhlmann, Kexin Lou, Yorguin-Jose Mantilla-Ramos, Jason B Mattingley, Michael Lukas Meier, Jo Morris, Akshaiy Narayanan, Franco Pestilli, Aina Puce, Fernanda Lenita Ribeiro, Nigel C Rogasch, Chris Rorden, Mark M Schira, Thomas B Shaw, Paul F Sowman, Gershon Spitz, Ashley Wilton Stewart, Xincheng Ye, Judy D Zhu, Aswin Narayanan, Steffen Bollmann
Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging. Nature methods (2024)
Angela I Renton, Thuy T Dao, Tom Johnstone, Oren Civier, Ryan P Sullivan, David J White, Paris Lyons, Benjamin M Slade, David F Abbott, Toluwani J Amos, Saskia Bollmann, Andy Botting, Megan E J Campbell, Jeryn Chang, Thomas G Close, Monika Dörig, Korbinian Eckstein, Gary F Egan, Stefanie Evas, Guillaume Flandin, Kelly G Garner, Marta I Garrido, Satrajit S Ghosh, Martin Grignard, Yaroslav O Halchenko, Anthony J Hannan, Anibal S Heinsfeld, Laurentius Huber, Matthew E Hughes, Jakub R Kaczmarzyk, Lars Kasper, Levin Kuhlmann, Kexin Lou, Yorguin-Jose Mantilla-Ramos, Jason B Mattingley, Michael Lukas Meier, Jo Morris, Akshaiy Narayanan, Franco Pestilli, Aina Puce, Fernanda Lenita Ribeiro, Nigel C Rogasch, Chris Rorden, Mark M Schira, Thomas B Shaw, Paul F Sowman, Gershon Spitz, Ashley Wilton Stewart, Xincheng Ye, Judy D Zhu, Aswin Narayanan, Steffen Bollmann
Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging. Nature methods 21 (5) (2024)
Malia B McAvoy, Paola Calvachi Prieto, Jakub R Kaczmarzyk, Iván Sánchez Fernández, Jack McNulty, Timothy Smith, Kun-Hsing Yu, William B Gormley, Omar Arnaout
Classification of glioblastoma versus primary central nervous system lymphoma using convolutional neural networks. Scientific reports 11 (1) (2021)
Alexander F Hoffman, Matthew D Lycas, Jakub R Kaczmarzyk, Charles E Spivak, Michael H Baumann, Carl R Lupica
Disruption of hippocampal synaptic transmission and long-term potentiation by psychoactive synthetic cannabinoid 'Spice' compounds: comparison with Δ9 -tetrahydrocannabinol. Addiction biology 22 (2) (2016)