Kun-Hsing Yu (K-H Yu)

ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 36

Top Venues

Briefings in bioinformatics

NPJ precision oncology

medRxiv : the preprint server for health sciences

Nature communications

Harvard Medical School

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Harvard Medical School Jan 01 2020

United States

Assistant Professor :: Biomedical Informatics

Publications

Guihong Wan, Zoltan Maliga, Boshen Yan, Tuulia Vallius, Yingxiao Shi, Sara Khattab, Crystal T Chang, Ajit J Nirmal, Kun-Hsing Yu, David Liu, Christine G Lian, Mia S DeSimone, Peter K Sorger, Yevgeniy R Semenov
SpatialCells: automated profiling of tumor microenvironments with spatially resolved multiplexed single-cell data. Briefings in bioinformatics 25 (3) (2024)
Xiyue Wang, Junhan Zhao, Eliana Marostica, Wei Yuan, Jietian Jin, Jiayu Zhang, Ruijiang Li, Hongping Tang, Kanran Wang, Yu Li, Fang Wang, Yulong Peng, Junyou Zhu, Jing Zhang, Christopher R Jackson, Jun Zhang, Deborah Dillon, Nancy U Lin, Lynette Sholl, Thomas Denize, David Meredith, Keith L Ligon, Sabina Signoretti, Shuji Ogino, Jeffrey A Golden, Mac Lean P Nasrallah, Xiao Han, Sen Yang, Kun-Hsing Yu
A pathology foundation model for cancer diagnosis and prognosis prediction. Nature (2024)
Guihong Wan, Zoltan Maliga, Boshen Yan, Tuulia Vallius, Yingxiao Shi, Sara Khattab, Crystal T Chang, Ajit J Nirmal, Kun-Hsing Yu, David Liu, Christine G Lian, Mia S DeSimone, Peter K Sorger, Yevgeniy R Semenov
SpatialCells: automated profiling of tumor microenvironments with spatially resolved multiplexed single-cell data. Briefings in bioinformatics 25 (3) (2024)
Guihong Wan, Zoltan Maliga, Boshen Yan, Tuulia Vallius, Yingxiao Shi, Sara Khattab, Crystal T Chang, Ajit J Nirmal, Kun-Hsing Yu, David Liu, Christine G Lian, Mia S DeSimone, Peter K Sorger, Yevgeniy R Semenov
SpatialCells: automated profiling of tumor microenvironments with spatially resolved multiplexed single-cell data. Briefings in bioinformatics 25 (3) (2024)
Guihong Wan, Zoltan Maliga, Boshen Yan, Tuulia Vallius, Yingxiao Shi, Sara Khattab, Crystal T Chang, Ajit J Nirmal, Kun-Hsing Yu, David Liu, Christine G Lian, Mia S DeSimone, Peter K Sorger, Yevgeniy R Semenov
SpatialCells: automated profiling of tumor microenvironments with spatially resolved multiplexed single-cell data. Briefings in bioinformatics 25 (3) (2024)
Kun-Hsing Yu, Elizabeth Healey, Tze-Yun Leong, Isaac S Kohane, Arjun K Manrai
Medical Artificial Intelligence and Human Values. The New England journal of medicine 390 (20) (2024)
Guihong Wan, Zoltan Maliga, Boshen Yan, Tuulia Vallius, Yingxiao Shi, Sara Khattab, Crystal T Chang, Ajit J Nirmal, Kun-Hsing Yu, David Liu, Christine G Lian, Mia S DeSimone, Peter K Sorger, Yevgeniy R Semenov
SpatialCells: automated profiling of tumor microenvironments with spatially resolved multiplexed single-cell data. Briefings in bioinformatics 25 (3) (2024)
Kun-Hsing Yu, Elizabeth Healey, Tze-Yun Leong, Isaac S Kohane, Arjun K Manrai
Medical Artificial Intelligence and Human Values. The New England journal of medicine 390 (20) (2024)
Shijia Zhang, Kimberly Tang, Guihong Wan, Nga Nguyen, Chenyue Lu, Pearl Ugwu-Dike, Neel Raval, Jayhyun Seo, Nora A Alexander, Ruple Jairath, Jordan Phillipps, Bonnie W Leung, Kathleen Roster, Wenxin Chen, Leyre Zubiri, Genevieve Boland, Steven T Chen, Hensin Tsao, Shadmehr Demehri, Nicole R LeBoeuf, Kerry L Reynolds, Kun-Hsing Yu, Alexander Gusev, Shawn G Kwatra, Yevgeniy R Semenov
Cutaneous immune-related adverse events are associated with longer overall survival in advanced cancer patients on immune checkpoint inhibitors: a multi-institutional cohort study. medRxiv : the preprint server for health sciences (2023)
Pei-Chen Tsai, Tsung-Hua Lee, Kun-Chi Kuo, Fang-Yi Su, Tsung-Lu Michael Lee, Eliana Marostica, Tomotaka Ugai, Melissa Zhao, Mai Chan Lau, Juha P Väyrynen, Marios Giannakis, Yasutoshi Takashima, Seyed Mousavi Kahaki, Kana Wu, Mingyang Song, Jeffrey A Meyerhardt, Andrew T Chan, Jung-Hsien Chiang, Jonathan Nowak, Shuji Ogino, Kun-Hsing Yu
Histopathology images predict multi-omics aberrations and prognoses in colorectal cancer patients. Nature communications 14 (1) (2023)
Melissa Zhao, Mai Chan Lau, Koichiro Haruki, Juha P Väyrynen, Carino Gurjao, Sara A Väyrynen, Andressa Dias Costa, Jennifer Borowsky, Kenji Fujiyoshi, Kota Arima, Tsuyoshi Hamada, Jochen K Lennerz, Charles S Fuchs, Reiko Nishihara, Andrew T Chan, Kimmie Ng, Xuehong Zhang, Jeffrey A Meyerhardt, Mingyang Song, Molin Wang, Marios Giannakis, Jonathan A Nowak, Kun-Hsing Yu, Tomotaka Ugai, Shuji Ogino
Bayesian risk prediction model for colorectal cancer mortality through integration of clinicopathologic and genomic data. NPJ precision oncology 7 (1) (2023)
Guihong Wan, Zoltan Maliga, Boshen Yan, Tuulia Vallius, Yingxiao Shi, Sara Khattab, Crystal Chang, Ajit J Nirmal, Kun-Hsing Yu, David Liu, Christine G Lian, Mia S DeSimone, Peter Karl Sorger, Yevgeniy R Semenov
SpatialCells: Automated Profiling of Tumor Microenvironments with Spatially Resolved Multiplexed Single-Cell Data. bioRxiv : the preprint server for biology (2023)
Shijia Zhang, Kimberly Tang, Guihong Wan, Nga Nguyen, Chenyue Lu, Pearl Ugwu-Dike, Neel Raval, Jayhyun Seo, Nora A Alexander, Ruple Jairath, Jordan Phillipps, Bonnie W Leung, Kathleen Roster, Wenxin Chen, Leyre Zubiri, Genevieve Boland, Steven T Chen, Hensin Tsao, Shadmehr Demehri, Nicole R LeBoeuf, Kerry L Reynolds, Kun-Hsing Yu, Alexander Gusev, Shawn G Kwatra, Yevgeniy R Semenov
Cutaneous immune-related adverse events are associated with longer overall survival in advanced cancer patients on immune checkpoint inhibitors: a multi-institutional cohort study. medRxiv : the preprint server for health sciences (2023)
Feicheng Wang, Nathan Palmer, Kathe Fox, Katherine P Liao, Kun-Hsing Yu, Samuel C Kou
Large-scale real-world data analyses of cancer risks among patients with rheumatoid arthritis. International journal of cancer (2023)
Shijia Zhang, Kimberly Tang, Guihong Wan, Nga Nguyen, Chenyue Lu, Pearl Ugwu-Dike, Neel Raval, Jayhyun Seo, Nora A Alexander, Ruple Jairath, Jordan Phillipps, Bonnie W Leung, Kathleen Roster, Wenxin Chen, Leyre Zubiri, Genevieve Boland, Steven T Chen, Hensin Tsao, Shadmehr Demehri, Nicole R LeBoeuf, Kerry L Reynolds, Kun-Hsing Yu, Alexander Gusev, Shawn G Kwatra, Yevgeniy R Semenov
Cutaneous immune-related adverse events are associated with longer overall survival in advanced cancer patients on immune checkpoint inhibitors: a multi-institutional cohort study. medRxiv : the preprint server for health sciences (2023)
Guihong Wan, Nga Nguyen, Feng Liu, Mia S DeSimone, Bonnie W Leung, Ahmad Rajeh, Michael R Collier, Min Seok Choi, Munachimso Amadife, Kimberly Tang, Shijia Zhang, Jordan S Phillipps, Ruple Jairath, Nora A Alexander, Yining Hua, Meng Jiao, Wenxin Chen, Diane Ho, Stacey Duey, István Balázs Németh, Gyorgy Marko-Varga, Jeovanis Gil Valdés, David R Liu, Genevieve Marie Boland, Alexander Gusev, Peter Karl Sorger, Kun-Hsing Yu, Yevgeniy R Semenov
Prediction of early-stage melanoma recurrence using clinical and histopathologic features. NPJ precision oncology 6 (1) (2022)
Chenyue Lu, Di Jin, Nathan Palmer, Kathe Fox, Isaac S Kohane, Jordan W Smoller, Kun-Hsing Yu
Large-scale real-world data analysis identifies comorbidity patterns in schizophrenia. Translational psychiatry 12 (1) (2022)
Benjamin D Lee, Anthony Gitter, Casey S Greene, Sebastian Raschka, Finlay Maguire, Alexander J Titus, Michael D Kessler, Alexandra J Lee, Marc G Chevrette, Paul Allen Stewart, Thiago Britto-Borges, Evan M Cofer, Kun-Hsing Yu, Juan Jose Carmona, Elana J Fertig, Alexandr A Kalinin, Brandon Signal, Benjamin J Lengerich, Timothy J Triche, Simina M Boca
Ten quick tips for deep learning in biology. PLoS computational biology 18 (3) (2022)
Eliana Marostica, Rebecca Barber, Thomas Denize, Isaac S Kohane, Sabina Signoretti, Jeffrey A Golden, Kun-Hsing Yu
Development of a Histopathology Informatics Pipeline for Classification and Prediction of Clinical Outcomes in Subtypes of Renal Cell Carcinoma. Clinical cancer research : an official journal of the American Association for Cancer Research 27 (10) (2021)
Feicheng Wang, Shihao Yang, Nathan Palmer, Kathe Fox, Isaac S Kohane, Katherine P Liao, Kun-Hsing Yu, S C Kou
Real-world data analyses unveiled the immune-related adverse effects of immune checkpoint inhibitors across cancer types. NPJ precision oncology 5 (1) (2021)
Yasha Ektefaie, William Yuan, Deborah A Dillon, Nancy U Lin, Jeffrey A Golden, Isaac S Kohane, Kun-Hsing Yu
Integrative multiomics-histopathology analysis for breast cancer classification. NPJ breast cancer 7 (1) (2021)
Malia B McAvoy, Paola Calvachi Prieto, Jakub R Kaczmarzyk, Iván Sánchez Fernández, Jack McNulty, Timothy Smith, Kun-Hsing Yu, William B Gormley, Omar Arnaout
Classification of glioblastoma versus primary central nervous system lymphoma using convolutional neural networks. Scientific reports 11 (1) (2021)
William Yuan, Brett K Beaulieu-Jones, Kun-Hsing Yu, Scott L Lipnick, Nathan P Palmer, Joseph Loscalzo, Tianxi Cai, Isaac S Kohane
Temporal bias in case-control design: preventing reliable predictions of the future. Nature communications 12 (1) (2021)
Kun-Hsing Yu, Tsung-Lu Michael Lee, Ming-Hsuan Yen, S C Kou, Bruce R Rosen, Jung-Hsien Chiang, Isaac S Kohane
Reproducible Machine Learning Methods for Lung Cancer Detection Using Computed Tomography Images: Algorithm Development and Validation. Journal of medical Internet research 22 (8) (2020)
Oren Miron, Rafael E Delgado, Christine F Delgado, Elizabeth A Simpson, Kun-Hsing Yu, Anibal Gutierrez, Guangyu Zeng, Jillian N Gerstenberger, Isaac S Kohane
Prolonged Auditory Brainstem Response in Universal Hearing Screening of Newborns with Autism Spectrum Disorder. Autism research : official journal of the International Society for Autism Research 14 (1) (2020)
Kun-Hsing Yu, Vincent Hu, Feiran Wang, Ursula A Matulonis, George L Mutter, Jeffrey A Golden, Isaac S Kohane
Deciphering serous ovarian carcinoma histopathology and platinum response by convolutional neural networks. BMC medicine 18 (1) (2020)
Kun-Hsing Yu, N Palmer, K Fox, L Prock, K D Mandl, I S Kohane, D Prilutsky
The phenotypical implications of immune dysregulation in fragile X syndrome. European journal of neurology 27 (3) (2020)
Shihao Yang, Kun-Hsing Yu, Nathan Palmer, Kathe Fox, S C Kou, Isaac S Kohane
Autoimmune Effects of Lung Cancer Immunotherapy Revealed by Data-Driven Analysis on a Nationwide Cohort. Clinical pharmacology and therapeutics 107 (2) (2019)
Brett K Beaulieu-Jones, Samuel G Finlayson, William Yuan, Russ B Altman, Isaac S Kohane, Vinay Prasad, Kun-Hsing Yu
Examining the Use of Real-World Evidence in the Regulatory Process. Clinical pharmacology and therapeutics 107 (4) (2019)
W Han, Lei Qin, Camden P Bay, Xin Chen, Kun-Hsing Yu, Nityanand P Miskin, A Li, Xiaoyin Xu, Geoffrey S Young
Deep Transfer Learning and Radiomics Feature Prediction of Survival of Patients with High-Grade Gliomas. AJNR. American journal of neuroradiology 41 (1) (2019)
William Yuan, Kun-Hsing Yu, Nathan Palmer, Fatima Cody Stanford, Isaac Kohane
Evaluation of the association of bariatric surgery with subsequent depression. International journal of obesity (2005) 43 (12) (2019)
Kun-Hsing Yu, Tsung-Lu Michael Lee, Yi-Ju Chen, Christopher Ré, Samuel C Kou, Jung-Hsien Chiang, Michael Snyder, Isaac S Kohane
A Cloud-Based Metabolite and Chemical Prioritization System for the Biology/Disease-Driven Human Proteome Project. Journal of proteome research 17 (12) (2018)
Kun-Hsing Yu, Isaac S Kohane
Framing the challenges of artificial intelligence in medicine. BMJ quality & safety 28 (3) (2018)
Kun-Hsing Yu, Tsung-Lu Michael Lee, Chi-Shiang Wang, Yi-Ju Chen, Christopher Ré, Samuel C Kou, Jung-Hsien Chiang, Isaac S Kohane, Michael Snyder
Systematic Protein Prioritization for Targeted Proteomics Studies through Literature Mining. Journal of proteome research 17 (4) (2018)
Kun-Hsing Yu, Andrew L Beam, Isaac S Kohane
Artificial intelligence in healthcare. Nature biomedical engineering 2 (10) (2018)
Kun-Hsing Yu, Ce Zhang, Gerald J Berry, Russ B Altman, Christopher Ré, Daniel L Rubin, Michael Snyder
Predicting non-small cell lung cancer prognosis by fully automated microscopic pathology image features. Nature communications 7 (2016)
Jingjing Li, Kun-Hsing Yu, John Oehlert, Laura L Jeliffe-Pawlowski, Jeffrey B Gould, David K Stevenson, Michael Snyder, Gary M Shaw, Hugh M O'Brodovich
Exome Sequencing of Neonatal Blood Spots and the Identification of Genes Implicated in Bronchopulmonary Dysplasia. American journal of respiratory and critical care medicine 192 (5) (2015)

Kun-Hsing Yu.css-eqlu8i{font-size:small;padding-left:4px;} (K-H Yu)

Publication Activity (10 Years)

Top Topics

Top Venues

Kun-Hsing Yu (K-H Yu)