James S Nagai (James Nagai)

Publication Activity (10 Years)

Years Active: 2022-2023
Publications (10 Years): 11

Top Topics

Hypertrophic Cardiomyopathy

Top Venues

Molecular systems biology

Bioinformatics advances

Science advances

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Mehdi Joodaki, Mina Shaigan, Victor Parra, Roman David Bülow, Christoph Kuppe, David L Hölscher, Mingbo Cheng, James S Nagai, Michaël Goedertier, Nassim Bouteldja, Vladimir Tesar, Jonathan Barratt, Ian Sd Roberts, Rosanna Coppo, Rafael Kramann, Peter Boor, Ivan G Costa
Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT). Molecular systems biology 20 (2) (2023)
Zhijian Li, James S Nagai, Christoph Kuppe, Rafael Kramann, Ivan G Costa
scMEGA: single-cell multi-omic enhancer-based gene regulatory network inference. Bioinformatics advances 3 (1) (2023)
Mehdi Joodaki, Mina Shaigan, Victor Parra, Roman David Bülow, Christoph Kuppe, David L Hölscher, Mingbo Cheng, James S Nagai, Michaël Goedertier, Nassim Bouteldja, Vladimir Tesar, Jonathan Barratt, Ian Sd Roberts, Rosanna Coppo, Rafael Kramann, Peter Boor, Ivan G Costa
Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT). Molecular systems biology (2023)
Mehdi Joodaki, Mina Shaigan, Victor Parra, Roman David Bülow, Christoph Kuppe, David L Hölscher, Mingbo Cheng, James S Nagai, Michaël Goedertier, Nassim Bouteldja, Vladimir Tesar, Jonathan Barratt, Ian Sd Roberts, Rosanna Coppo, Rafael Kramann, Peter Boor, Ivan G Costa
Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT). Molecular systems biology 20 (2) (2023)
Mehdi Joodaki, Mina Shaigan, Victor Parra, Roman David Bülow, Christoph Kuppe, David L Hölscher, Mingbo Cheng, James S Nagai, Michaël Goedertier, Nassim Bouteldja, Vladimir Tesar, Jonathan Barratt, Ian Sd Roberts, Rosanna Coppo, Rafael Kramann, Peter Boor, Ivan G Costa
Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT). Molecular systems biology 20 (2) (2023)
Mehdi Joodaki, Mina Shaigan, Victor Parra, Roman David Bülow, Christoph Kuppe, David L Hölscher, Mingbo Cheng, James S Nagai, Michaël Goedertier, Nassim Bouteldja, Vladimir Tesar, Jonathan Barratt, Ian Sd Roberts, Rosanna Coppo, Rafael Kramann, Peter Boor, Ivan G Costa
Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT). Molecular systems biology (2023)
Zhijian Li, James S Nagai, Christoph Kuppe, Rafael Kramann, Ivan G Costa
scMEGA: single-cell multi-omic enhancer-based gene regulatory network inference. Bioinformatics advances 3 (1) (2023)
Nadine Kaesler, Mingbo Cheng, James S Nagai, James O'Sullivan, Fabian Peisker, Eric M J Bindels, Anne Babler, Julia Moellmann, Patrick Droste, Giulia Franciosa, Aurélien J F Dugourd, Julio Saez-Rodriguez, Sabine Neuss, Michael Lehrke, Peter Boor, Claudia Goettsch, Jesper Velgaard Olsen, Thimoteus Speer, Tzong-Shi Lu, Kenneth Lim, Jürgen Floege, Laura Denby, Ivan G Costa, Rafael Kramann
Mapping cardiac remodeling in chronic kidney disease. Science advances 9 (47) (2023)
Jitske Jansen, Bartholomeus T van den Berge, Martijn van den Broek, Rutger J Maas, Deniz Daviran, Brigith Willemsen, Rona Roverts, Marit van der Kruit, Christoph Kuppe, Katharina C Reimer, Gianluca Di Giovanni, Fieke Mooren, Quincy Nlandu, Helmer Mudde, Roy Wetzels, Dirk den Braanker, Naomi Parr, James S Nagai, Vedran Drenic, Ivan G Costa, Eric Steenbergen, Tom Nijenhuis, Henry B Dijkman, Nicole Endlich, Nicole C A J van de Kar, Rebekka K Schneider, Jack F M Wetzels, Anat Akiva, Johan van der Vlag, Rafael Kramann, Michiel F Schreuder, Bart Smeets
Human pluripotent stem cell-derived kidney organoids for personalized congenital and idiopathic nephrotic syndrome modeling. Development (Cambridge, England) 149 (9) (2022)
James S Nagai, Nils B Leimkühler, Michael T Schaub, Rebekka K Schneider, Ivan G Costa
CrossTalkeR: analysis and visualization of ligand-receptorne tworks. Bioinformatics (Oxford, England) 37 (22) (2022)
Fabian Peisker, Maurice Halder, James S Nagai, Susanne Ziegler, Nadine Kaesler, Konrad Hoeft, Ronghui Li, Eric M J Bindels, Christoph Kuppe, Julia Moellmann, Michael Lehrke, Christian Stoppe, Michael T Schaub, Rebekka K Schneider, Ivan G Costa, Rafael Kramann
Mapping the cardiac vascular niche in heart failure. Nature communications 13 (1) (2022)