Bernhard O Palsson (James T Yurkovich)

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 23

Top Venues

PLoS computational biology

Nature communications

Proceedings of the National Academy of Sciences of the United States of America

Metabolites

Institute for Systems Biology

University of California, San Diego (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Institute for Systems Biology Sep 10 2018

United States

Translational Research Fellow

University of California, San Diego

United States

Postdoctoral Scholar :: Bioengineering

Education History

University of California, San Diego

United States

PHD :: Bioengineering

University of Notre Dame

United States

BSC :: Electrical Engineering

Publications

Freyr Jóhannsson, Bernhard O Palsson, Steinn Guðmundsson, Ólafur Eysteinn Sigurjónsson, Óttar Rolfsson
Temperature Dependence of Platelet Metabolism. Metabolites 14 (2) (2024)
Freyr Jóhannsson, Bernhard O Palsson, Steinn Guðmundsson, Ólafur Eysteinn Sigurjónsson, Óttar Rolfsson
Temperature Dependence of Platelet Metabolism. Metabolites 14 (2) (2024)
Freyr Jóhannsson, Bernhard O Palsson, Steinn Guðmundsson, Ólafur Eysteinn Sigurjónsson, Óttar Rolfsson
Temperature Dependence of Platelet Metabolism. Metabolites 14 (2) (2024)
Bernhard O Palsson, Simon J Evans, Noa Rappaport, Jeffrey L Boore, Jennifer C Lovejoy, Nathan D Price, Leroy E Hood
The transition from genomics to phenomics in personalized population health. Nature reviews. Genetics (2023)
Bernhard O Palsson, Bernhard O Palsson
Is the kinetome conserved? Molecular systems biology 18 (2) (2022)
Tomasz Wilmanski, Christian Diener, Noa Rappaport, Sushmita Patwardhan, Jack Wiedrick, Jodi Lapidus, John C Earls, Anat Zimmer, Gwênlyn Glusman, Max Robinson, Bernhard O Palsson, Deborah M Kado, Jane A Cauley, Joseph Zmuda, Nancy E Lane, Andrew T Magis, Jennifer C Lovejoy, Leroy Hood, Sean M Gibbons, Eric S Orwoll, Nathan D Price
Gut microbiome pattern reflects healthy ageing and predicts survival in humans. Nature metabolism 3 (2) (2021)
Amir Akbari, Bernhard O Palsson, Daniel C Zielinski, Bernhard O Palsson
The quantitative metabolome is shaped by abiotic constraints. Nature communications 12 (1) (2021)
Zachary B Haiman, Daniel C Zielinski, Yuko Koike, Bernhard O Palsson, Bernhard O Palsson
MASSpy: Building, simulating, and visualizing dynamic biological models in Python using mass action kinetics. PLoS computational biology 17 (1) (2021)
Thora Bjorg Sigmarsdottir, Sarah McGarrity, Adrian Lopez Garcia de Lomana, Aristotelis Kotronoulas, Snaevar Sigurdsson, Bernhard O Palsson, Ottar Rolfsson, Ólafur Eysteinn Sigurjónsson
Metabolic and Transcriptional Changes across Osteogenic Differentiation of Mesenchymal Stromal Cells. Bioengineering (Basel, Switzerland) 8 (12) (2021)
Maureen A Carey, Andreas Dräger, Moritz Emanuel Beber, Jason A Papin, Bernhard O Palsson
Community standards to facilitate development and address challenges in metabolic modeling. Molecular systems biology 16 (8) (2021)
Laurence Yang, Nathan Mih, Amitesh Anand, Joon Ho Park, Justin Tan, Bernhard O Palsson, Jonathan M Monk, Colton J Lloyd, Troy E Sandberg, Sang Woo Seo, Donghyuk Kim, Anand V Sastry, Patrick Phaneuf, Ye Gao, Jared T Broddrick, Ke Chen, David Heckmann, Richard Szubin, Ying Hefner, Adam M Feist, Bernhard O Palsson
Cellular responses to reactive oxygen species are predicted from molecular mechanisms. Proceedings of the National Academy of Sciences of the United States of America 116 (28) (2019)
Bernhard O Palsson, Qiang Tian, Nathan D Price, Leroy E Hood
A systems approach to clinical oncology uses deep phenotyping to deliver personalized care. Nature reviews. Clinical oncology 17 (3) (2019)
Priyanka Baloni, Vineet Sangar, Bernhard O Palsson, Max Robinson, Scott Taylor, Christine M Karbowski, Hisham K Hamadeh, Yudong D He, Nathan D Price
Genome-scale metabolic model of the rat liver predicts effects of diet restriction. Scientific reports 9 (1) (2019)
Laurent Heirendt, Sylvain Arreckx, Thomas Pfau, Sebastián N Mendoza, Anne Richelle, Almut Heinken, Hulda S Haraldsdóttir, Jacek Wachowiak, Sarah M Keating, Vanja Vlasov, Stefania Magnusdóttir, Chiam Yu Ng, German Preciat, Alise Žagare, Siu H J Chan, Maike K Aurich, Catherine M Clancy, Jennifer Modamio, John T Sauls, Alberto Noronha, Aarash Bordbar, Benjamin Cousins, Diana C El Assal, Luis Vitores Valcárcel, Iñigo Apaolaza, Susan Ghaderi, Masoud Ahookhosh, Marouen Ben Guebila, Andrejs Kostromins, Nicolas Sompairac, Hoai M Le, Ding Ma, Yuekai Sun, Lin Wang, Bernhard O Palsson, Miguel A P Oliveira, Phan T Vuong, Lemmer P El Assal, Inna Kuperstein, Andrei Zinovyev, H Scott Hinton, William A Bryant, Francisco J Aragón Artacho, Francisco J Planes, Egils Stalidzans, Alejandro Maass, Santosh Vempala, Michael Hucka, Michael A Saunders, Costas D Maranas, Nathan E Lewis, Thomas Sauter, Bernhard Ø Palsson, Ines Thiele, Ronan M T Fleming
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0. Nature protocols 14 (3) (2019)
Bernhard O Palsson, Miguel A Alcantar, Zachary B Haiman, Bernhard O Palsson
Network-level allosteric effects are elucidated by detailing how ligand-binding events modulate utilization of catalytic potentials. PLoS computational biology 14 (8) (2018)
Elizabeth Brunk, Roger L Chang, Jing Xia, Hooman Hefzi, Bernhard O Palsson, Donghyuk Kim, Evan Buckmiller, Harris H Wang, Byung-Kwan Cho, Chen Yang, Bernhard O Palsson, George M Church, Nathan E Lewis
Characterizing posttranslational modifications in prokaryotic metabolism using a multiscale workflow. Proceedings of the National Academy of Sciences of the United States of America 115 (43) (2018)
James T Yurkovich, Aarash Bordbar, Ólafur E Sigurjónsson, Bernhard O Palsson
Systems biology as an emerging paradigm in transfusion medicine. BMC systems biology 12 (1) (2018)
Yara Seif, Erol S Kavvas, Jean-Christophe Lachance, Bernhard O Palsson, Sean-Paul Nuccio, Xin Fang, Edward Catoiu, Manuela Raffatellu, Bernhard O Palsson, Jonathan M Monk
Genome-scale metabolic reconstructions of multiple Salmonella strains reveal serovar-specific metabolic traits. Nature communications 9 (1) (2018)
Xin Fang, Jonathan M Monk, Nathan Mih, Bin Du, Anand V Sastry, Erol Kavvas, Yara Seif, Larry Smarr, Bernhard O Palsson
Escherichia coli B2 strains prevalent in inflammatory bowel disease patients have distinct metabolic capabilities that enable colonization of intestinal mucosa. BMC systems biology 12 (1) (2018)
Erol S Kavvas, Edward Catoiu, Nathan Mih, Bernhard O Palsson, Yara Seif, Nicholas Dillon, David Heckmann, Amitesh Anand, Laurence Yang, Victor Nizet, Jonathan M Monk, Bernhard O Palsson
Machine learning and structural analysis of Mycobacterium tuberculosis pan-genome identifies genetic signatures of antibiotic resistance. Nature communications 9 (1) (2018)
Xin Fang, Anand Sastry, Nathan Mih, Donghyuk Kim, Justin Tan, Bernhard O Palsson, Colton J Lloyd, Ye Gao, Laurence Yang, Bernhard O Palsson
Global transcriptional regulatory network for Escherichia coli robustly connects gene expression to transcription factor activities. Proceedings of the National Academy of Sciences of the United States of America 114 (38) (2017)
Bernhard O Palsson, Daniel P Zielinski, Laurence Yang, Giuseppe Paglia, Óttar Rolfsson, Ólafur E Sigurjónsson, Jared T Broddrick, Aarash Bordbar, Kristine Wichuk, Sigurður Brynjólfsson, Sirus Palsson, Sveinn Gudmundsson, Bernhard O Palsson
Quantitative time-course metabolomics in human red blood cells reveal the temperature dependence of human metabolic networks. The Journal of biological chemistry 292 (48) (2017)
Bernhard O Palsson, Laurence Yang, Bernhard O Palsson
Biomarkers are used to predict quantitative metabolite concentration profiles in human red blood cells. PLoS computational biology 13 (3) (2017)

Bernhard O Palsson.css-eqlu8i{font-size:small;padding-left:4px;} (James T Yurkovich)

Publication Activity (10 Years)

Top Topics

Top Venues

Bernhard O Palsson (James T Yurkovich)