Elizabeth Brunk

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 8

Top Topics

Escherichia Coli

Machine Learning

Top Venues

Nature biotechnology

Journal of chemical information and modeling

Proceedings of the National Academy of Sciences of the United States of America

This page only lists publications with an associated author ORCID identifier.

Publications

Jacob Fessler, Stephanie Ting, Hong Yi, Santiago Haase, Jingting Chen, Saygin Gulec, Yue Wang, Nathan Smyers, Kohen Goble, Danielle Cannon, Aarav Mehta, Christina Ford, Elizabeth Brunk
CytoCellDB: a comprehensive resource for exploring extrachromosomal DNA in cancer cell lines. NAR cancer 6 (3) (2024)
Kriti Shukla, Kelvin Idanwekhai, Martin Naradikian, Stephanie Ting, Stephen P Schoenberger, Elizabeth Brunk
Machine Learning of Three-Dimensional Protein Structures to Predict the Functional Impacts of Genome Variation. Journal of chemical information and modeling (2024)
Kriti Shukla, Kelvin Idanwekhai, Martin Naradikian, Stephanie Ting, Stephen P Schoenberger, Elizabeth Brunk
Machine Learning of Three-Dimensional Protein Structures to Predict the Functional Impacts of Genome Variation. Journal of chemical information and modeling 64 (13) (2024)
Jacob Fessler, Stephanie Ting, Hong Yi, Santiago Haase, Jingting Chen, Saygin Gulec, Yue Wang, Nathan Smyers, Kohen Goble, Danielle Cannon, Aarav Mehta, Christina Ford, Elizabeth Brunk
CytoCellDB: a comprehensive resource for exploring extrachromosomal DNA in cancer cell lines. NAR cancer 6 (3) (2024)
Jonathan M Monk, Colton J Lloyd, Elizabeth Brunk, Nathan Mih, Anand Sastry, Zachary A King, Rikiya Takeuchi, Wataru Nomura, Zhen Zhang, Hirotada Mori, Adam M Feist, Bernhard O Palsson
iML1515, a knowledgebase that computes Escherichia coli traits. Nature biotechnology 35 (10) (2019)
Elizabeth Brunk, Roger L Chang, Jing Xia, Hooman Hefzi, Bernhard O Palsson, Donghyuk Kim, Evan Buckmiller, Harris H Wang, Byung-Kwan Cho, Chen Yang, Bernhard O Palsson, George M Church, Nathan E Lewis
Characterizing posttranslational modifications in prokaryotic metabolism using a multiscale workflow. Proceedings of the National Academy of Sciences of the United States of America 115 (43) (2018)
Elizabeth Brunk, Swagatika Sahoo, Daniel C Zielinski, Ali Altunkaya, Andreas Dräger, Nathan Mih, Francesco Gatto, Avlant Nilsson, German Andres Preciat Gonzalez, Maike Kathrin Aurich, Andreas Prlić, Anand Sastry, Anna D Danielsdottir, Almut Heinken, Alberto Noronha, Peter W Rose, Stephen K Burley, Ronan M T Fleming, Jens B Nielsen, Ines Thiele, Bernhard O Palsson
Recon3D enables a three-dimensional view of gene variation in human metabolism. Nature biotechnology 36 (3) (2018)
Nathan Mih, Elizabeth Brunk, Aarash Bordbar, Bernhard O Palsson
A Multi-scale Computational Platform to Mechanistically Assess the Effect of Genetic Variation on Drug Responses in Human Erythrocyte Metabolism. PLoS computational biology 12 (7) (2016)