Yara Seif

Publication Activity (10 Years)

Years Active: 2018-2023
Publications (10 Years): 11

Top Topics

Machine Learning

Staphylococcus Aureus

Genetic Diversity

Antimicrobial Resistance

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

Scientific data

Nature protocols

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Ye Gao, Ina Bang, Yara Seif, Donghyuk Kim, Bernhard O Palsson
The Escherichia coli Fur pan-regulon has few conserved but many unique regulatory targets. Nucleic acids research (2023)
Anaëlle Fait, Yara Seif, Kasper Mikkelsen, Saugat Poudel, Jerry M Wells, Bernhard O Palsson, Hanne Ingmer
Adaptive laboratory evolution and independent component analysis disentangle complex vancomycin adaptation trajectories. Proceedings of the National Academy of Sciences of the United States of America 119 (30) (2022)
Akanksha Rajput, Yara Seif, Kumari Sonal Choudhary, Christopher Dalldorf, Saugat Poudel, Jonathan M Monk, Bernhard O Palsson
Pangenome Analytics Reveal Two-Component Systems as Conserved Targets in ESKAPEE Pathogens. mSystems 6 (1) (2021)
Henrique Machado, Yara Seif, George Sakoulas, Connor A Olson, Ying Hefner, Amitesh Anand, Ying Z Jones, Richard Szubin, Bernhard O Palsson, Victor Nizet, Adam M Feist
Environmental conditions dictate differential evolution of vancomycin resistance in Staphylococcus aureus. Communications biology 4 (1) (2021)
Yara Seif, Kumari Sonal Choudhary, Ying Hefner, Amitesh Anand, Laurence Yang, Bernhard O Palsson
Metabolic and genetic basis for auxotrophies in Gram-negative species. Proceedings of the National Academy of Sciences of the United States of America 117 (11) (2020)
Saugat Poudel, Hannah Tsunemoto, Yara Seif, Anand V Sastry, Richard Szubin, Sibei Xu, Henrique Machado, Connor A Olson, Amitesh Anand, Joe Pogliano, Victor Nizet, Bernhard O Palsson
Revealing 29 sets of independently modulated genes in Staphylococcus aureus, their regulators, and role in key physiological response. Proceedings of the National Academy of Sciences of the United States of America 117 (29) (2020)
Akanksha Rajput, Saugat Poudel, Hannah Tsunemoto, Michael Meehan, Richard Szubin, Connor A Olson, Anne Lamsa, Yara Seif, Nicholas Dillon, Alison Vrbanac, Joseph Sugie, Samira Dahesh, Jonathan M Monk, Pieter C Dorrestein, Rob Knight, Victor Nizet, Bernhard O Palsson, Adam M Feist, Joe Pogliano
Profiling the effect of nafcillin on HA-MRSA D712 using bacteriological and physiological media. Scientific data 6 (1) (2019)
Saugat Poudel, Hannah Tsunemoto, Michael Meehan, Richard Szubin, Connor A Olson, Anne Lamsa, Yara Seif, Nicholas Dillon, Alison Vrbanac, Joseph Sugie, Samira Dahesh, Jonathan M Monk, Pieter C Dorrestein, Joseph Pogliano, Rob Knight, Victor Nizet, Bernhard O Palsson, Adam M Feist
Characterization of CA-MRSA TCH1516 exposed to nafcillin in bacteriological and physiological media. Scientific data 6 (1) (2019)
Amitesh Anand, Ke Chen, Laurence Yang, Anand V Sastry, Connor A Olson, Saugat Poudel, Yara Seif, Ying Hefner, Patrick V Phaneuf, Sibei Xu, Richard Szubin, Adam M Feist, Bernhard O Palsson
Adaptive evolution reveals a tradeoff between growth rate and oxidative stress during naphthoquinone-based aerobic respiration. Proceedings of the National Academy of Sciences of the United States of America 116 (50) (2019)
Charles J Norsigian, Xin Fang, Yara Seif, Jonathan M Monk, Bernhard O Palsson
A workflow for generating multi-strain genome-scale metabolic models of prokaryotes. Nature protocols 15 (1) (2019)
Erol S Kavvas, Edward Catoiu, Nathan Mih, Bernhard O Palsson, Yara Seif, Nicholas Dillon, David Heckmann, Amitesh Anand, Laurence Yang, Victor Nizet, Jonathan M Monk, Bernhard O Palsson
Machine learning and structural analysis of Mycobacterium tuberculosis pan-genome identifies genetic signatures of antibiotic resistance. Nature communications 9 (1) (2018)