Jianzhi Zhang

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 67

Top Topics

Saccharomyces Cerevisiae

Gene Expression

Top Venues

Science advances

Nature communications

Molecular biology and evolution

Proceedings of the National Academy of Sciences of the United States of America

This page only lists publications with an associated author ORCID identifier.

Publications

Siliang Song, Jianzhi Zhang
Genetic variants underlying human bisexual behavior are reproductively advantageous. Science advances 10 (1) (2024)
Jiachen Li, Siliang Song, Jianzhi Zhang
Where Are the Formerly Y-linked Genes in the Ryukyu Spiny Rat that has Lost its Y Chromosome? Genome biology and evolution 16 (3) (2024)
Piaopiao Chen, Jianzhi Zhang
The loci of environmental adaptation in a model eukaryote. Nature communications 15 (1) (2024)
Siliang Song, Jianzhi Zhang
Genetic variants underlying human bisexual behavior are reproductively advantageous. Science advances 10 (1) (2024)
Daohan Jiang, Jianzhi Zhang
Ascertainment Bias in the Genomic Test of Positive Selection on Regulatory Sequences. Molecular biology and evolution 41 (1) (2024)
Piaopiao Chen, Jianzhi Zhang
The loci of environmental adaptation in a model eukaryote. Nature communications 15 (1) (2024)
Siliang Song, Jianzhi Zhang
Genetic variants underlying human bisexual behavior are reproductively advantageous. Science advances 10 (1) (2024)
Jiachen Li, Siliang Song, Jianzhi Zhang
Where are the formerly Y-linked genes in the Ryukyu spiny rat that has lost its Y chromosome? Genome biology and evolution (2024)
Jiachen Li, Siliang Song, Jianzhi Zhang
Where Are the Formerly Y-linked Genes in the Ryukyu Spiny Rat that has Lost its Y Chromosome? Genome biology and evolution 16 (3) (2024)
Siliang Song, Jianzhi Zhang
Genetic variants underlying human bisexual behavior are reproductively advantageous. Science advances 10 (1) (2024)
Piaopiao Chen, Jianzhi Zhang
The loci of environmental adaptation in a model eukaryote. Nature communications 15 (1) (2024)
Daohan Jiang, Jianzhi Zhang
Ascertainment Bias in the Genomic Test of Positive Selection on Regulatory Sequences. Molecular biology and evolution 41 (1) (2024)
Jiachen Li, Siliang Song, Jianzhi Zhang
Where Are the Formerly Y-linked Genes in the Ryukyu Spiny Rat that has Lost its Y Chromosome? Genome biology and evolution 16 (3) (2024)
Siliang Song, Jianzhi Zhang
Genetic variants underlying human bisexual behavior are reproductively advantageous. Science advances 10 (1) (2024)
Piaopiao Chen, Jianzhi Zhang
The loci of environmental adaptation in a model eukaryote. Nature communications 15 (1) (2024)
Siliang Song, Jianzhi Zhang
Genetic variants underlying human bisexual behavior are reproductively advantageous. Science advances 10 (1) (2024)
Siliang Song, Jianzhi Zhang
Genetic variants underlying human bisexual behavior are reproductively advantageous. Science advances 10 (1) (2024)
Jiachen Li, Siliang Song, Jianzhi Zhang
Where Are the Formerly Y-linked Genes in the Ryukyu Spiny Rat that has Lost its Y Chromosome? Genome biology and evolution 16 (3) (2024)
Jianzhi Zhang, Sudhir Kumar
Masatoshi Nei (1931-2023). Nature ecology & evolution (2023)
Siliang Song, Jianzhi Zhang
Effective fitness under fluctuating selection with genetic drift. G3 (Bethesda, Md.) (2023)
Siliang Song, Jianzhi Zhang
Contraception ends the genetic maintenance of human same-sex sexual behavior. Proceedings of the National Academy of Sciences of the United States of America 120 (21) (2023)
Haoxuan Liu, Mengyi Sun, Jianzhi Zhang
Genomic estimates of mutation and substitution rates contradict the evolutionary speed hypothesis of the latitudinal diversity gradient. Proceedings. Biological sciences 290 (2009) (2023)
Zheng Li, Fengyu Zhao, Tianjiao Zhou, Jianzhi Zhang, Chuan Xu
COL, a pipeline for identifying putatively functional back-splicing. bioRxiv : the preprint server for biology (2023)
Haiqing Xu, Chuan Li, Chuan Xu, Jianzhi Zhang
Chance promoter activities illuminate the origins of eukaryotic intergenic transcriptions. Nature communications 14 (1) (2023)
Daohan Jiang, Jianzhi Zhang
Ascertainment bias in the genomic test of positive selection on regulatory sequences. Molecular biology and evolution (2023)
Haoxuan Liu, Jianzhi Zhang
Author Correction: The rate and molecular spectrum of mutation are selectively maintained in yeast. Nature communications 14 (1) (2023)
Piaopiao Chen, Jianzhi Zhang
Transcriptomic analysis reveals the rareness of genetic assimilation of gene expression in environmental adaptations. Science advances 9 (39) (2023)
Daohan Jiang, Alexander L Cope, Jianzhi Zhang, Matt Pennell
On the decoupling of evolutionary changes in mRNA and protein levels. Molecular biology and evolution (2023)
Daohan Jiang, Jianzhi Zhang
Ascertainment bias in the genomic test of positive selection on regulatory sequences. Molecular biology and evolution (2023)
Siliang Song, Jianzhi Zhang
Contraception ends the genetic maintenance of human same-sex sexual behavior. Proceedings of the National Academy of Sciences of the United States of America 120 (21) (2023)
Daohan Jiang, Jianzhi Zhang
Ascertainment bias in the genomic test of positive selection on regulatory sequences. Molecular biology and evolution (2023)
Erping Long, Jianzhi Zhang
Evidence for the role of selection for reproductively advantageous alleles in human aging. Science advances 9 (49) (2023)
Siliang Song, Jianzhi Zhang
Contraception ends the genetic maintenance of human same-sex sexual behavior. Proceedings of the National Academy of Sciences of the United States of America 120 (21) (2023)
Haiqing Xu, Jianzhi Zhang
On the Origin of Frameshift-Robustness of the Standard Genetic Code. Molecular biology and evolution 38 (10) (2022)
Mengyi Sun, Jianzhi Zhang
Preferred synonymous codons are translated more accurately: Proteomic evidence, among-species variation, and mechanistic basis. Science advances 8 (27) (2022)
Piaopiao Chen, Agnès H Michel, Jianzhi Zhang
Transposon insertional mutagenesis of diverse yeast strains suggests coordinated gene essentiality polymorphisms. Nature communications 13 (1) (2022)
Xukang Shen, Siliang Song, Chuan Li, Jianzhi Zhang
Synonymous mutations in representative yeast genes are mostly strongly non-neutral. Nature 606 (7915) (2022)
Haiqing Xu, Jianzhi Zhang
Is the Genetic Code Optimized for Resource Conservation? Molecular biology and evolution 38 (11) (2022)
Haoxuan Liu, Jianzhi Zhang
Is the Mutation Rate Lower in Genomic Regions of Stronger Selective Constraints? Molecular biology and evolution 39 (8) (2022)
Haoxuan Liu, Jianzhi Zhang
Testing the adaptive hypothesis of lagging-strand encoding in bacterial genomes. Nature communications 13 (1) (2022)
Daohan Jiang, Jianzhi Zhang
Author Correction: The preponderance of nonsynonymous A-to-I RNA editing in coleoids is nonadaptive. Nature communications 12 (1) (2021)
Jianzhi Zhang, Haiqing Xu
Caution in testing phenotypic selection. Proceedings of the National Academy of Sciences of the United States of America 118 (9) (2021)
Wenfeng Qian, Jianzhi Zhang
Codon usage bias and nuclear mRNA concentration: Correlation vs. causation. Proceedings of the National Academy of Sciences of the United States of America 118 (20) (2021)
Haoxuan Liu, Jianzhi Zhang
The rate and molecular spectrum of mutation are selectively maintained in yeast. Nature communications 12 (1) (2021)
Siliang Song, Jianzhi Zhang
Unbiased inference of the fitness landscape ruggedness from imprecise fitness estimates. Evolution; international journal of organic evolution 75 (11) (2021)
Wei-Chin Ho, Diyan Li, Qing Zhu, Jianzhi Zhang
Phenotypic plasticity as a long-term memory easing readaptations to ancestral environments. Science advances 6 (21) (2020)
Daniel M Lyons, Zhengting Zou, Haiqing Xu, Jianzhi Zhang
Idiosyncratic epistasis creates universals in mutational effects and evolutionary trajectories. Nature ecology & evolution 4 (12) (2020)
Chuan Xu, Jianzhi Zhang
A different perspective on alternative cleavage and polyadenylation. Nature reviews. Genetics 21 (1) (2020)
Piaopiao Chen, Jianzhi Zhang
Antagonistic pleiotropy conceals molecular adaptations in changing environments. Nature ecology & evolution 4 (3) (2020)
Feng Chen, Peng Wu, Shuyun Deng, Heng Zhang, Yutong Hou, Zheng Hu, Jianzhi Zhang, Xiaoshu Chen, Jian-Rong Yang
Dissimilation of synonymous codon usage bias in virus-host coevolution due to translational selection. Nature ecology & evolution 4 (4) (2020)
Daohan Jiang, Jianzhi Zhang
Fly wing evolution explained by a neutral model with mutational pleiotropy. Evolution; international journal of organic evolution 74 (9) (2020)
Zhengting Zou, Jianzhi Zhang
Amino acid exchangeabilities vary across the tree of life. Science advances 5 (12) (2019)
Chuan Li, Jianzhi Zhang
Stop-codon read-through arises largely from molecular errors and is generally nonadaptive. PLoS genetics 15 (5) (2019)
Daohan Jiang, Jianzhi Zhang
The preponderance of nonsynonymous A-to-I RNA editing in coleoids is nonadaptive. Nature communications 10 (1) (2019)
Haiqing Xu, Jing-Jing Liu, Zhen Liu, Ying Li, Yong-Su Jin, Jianzhi Zhang
Synchronization of stochastic expressions drives the clustering of functionally related genes. Science advances 5 (10) (2019)
Chuan Xu, Joong-Ki Park, Jianzhi Zhang
Evidence that alternative transcriptional initiation is largely nonadaptive. PLoS biology 17 (3) (2019)
Daohan Jiang, Jianzhi Zhang
Parallel transcriptomic changes in the origins of divergent monogamous vertebrates? Proceedings of the National Academy of Sciences of the United States of America 116 (36) (2019)
Xinzhu Wei, Jianzhi Zhang
Environment-dependent pleiotropic effects of mutations on the maximum growth rate r and carrying capacity K of population growth. PLoS biology 17 (1) (2019)
Mengyi Sun, Jianzhi Zhang
Chromosome-wide co-fluctuation of stochastic gene expression in mammalian cells. PLoS genetics 15 (9) (2019)
Erping Long, Jianzhi Zhang
Retesting the influences of mutation accumulation and antagonistic pleiotropy on human senescence and disease. Nature ecology & evolution 3 (7) (2019)
Xinzhu Wei, Jianzhi Zhang
The optimal mating distance resulting from heterosis and genetic incompatibility. Science advances 4 (11) (2018)
Wei-Chin Ho, Jianzhi Zhang
Publisher Correction: Evolutionary adaptations to new environments generally reverse plastic phenotypic changes. Nature communications 9 (1) (2018)
Chuan Li, Jianzhi Zhang
Multi-environment fitness landscapes of a tRNA gene. Nature ecology & evolution 2 (6) (2018)
Wei-Chin Ho, Jianzhi Zhang
Evolutionary adaptations to new environments generally reverse plastic phenotypic changes. Nature communications 9 (1) (2018)
Wei-Chin Ho, Yoshikazu Ohya, Jianzhi Zhang
Testing the neutral hypothesis of phenotypic evolution. Proceedings of the National Academy of Sciences of the United States of America 114 (46) (2017)
Jianzhi Zhang
Epistasis Analysis Goes Genome-Wide. PLoS genetics 13 (2) (2017)
Zhengting Zou, Jianzhi Zhang
Morphological and molecular convergences in mammalian phylogenetics. Nature communications 7 (2016)