Jie Liu

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 10

Top Venues

PLoS computational biology

Nucleic acids research

Scientific reports

eLife

University of Michigan

University of Wisconsin Madison (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Michigan Jan 01 2019

United States

Assistant Professor :: Computational Medicine and Bioinformatics

Education History

University of Wisconsin Madison

United States

PHD

Publications

Yicheng Tao, Fan Feng, Xin Luo, Conrad V Reihsmann, Alexander L Hopkirk, Jean-Philippe Cartailler, Marcela Brissova, Stephen C J Parker, Diane C Saunders, Jie Liu
CNTools: A computational toolbox for cellular neighborhood analysis from multiplexed images. PLoS computational biology 20 (8) (2024)
Yicheng Tao, Fan Feng, Xin Luo, Conrad V Reihsmann, Alexander L Hopkirk, Jean-Philippe Cartailler, Marcela Brissova, Stephen C J Parker, Diane C Saunders, Jie Liu
CNTools: A computational toolbox for cellular neighborhood analysis from multiplexed images. PLoS computational biology 20 (8) (2024)
Zhenhao Zhang, Fan Feng, Yiyang Qiu, Jie Liu
A generalizable framework to comprehensively predict epigenome, chromatin organization, and transcriptome. Nucleic acids research (2023)
Fan Feng, Feitong Tang, Yijia Gao, Dongyu Zhu, Tianjun Li, Shuyuan Yang, Yuan Yao, Yuanhao Huang, Jie Liu
GenomicKB: a knowledge graph for the human genome. Nucleic acids research (2022)
Zhenhao Zhang, Fan Feng, Jie Liu
Characterizing collaborative transcription regulation with a graph-based deep learning approach. PLoS computational biology 18 (6) (2022)
Yuanhao Huang, Bingjiang Wang, Jie Liu
NucleoMap: A computational tool for identifying nucleosomes in ultra-high resolution contact maps. PLoS computational biology 18 (7) (2022)
Pamela Himadewi, Xue Qing David Wang, Fan Feng, Haley Gore, Yushuai Liu, Lei Yu, Ryo Kurita, Yukio Nakamura, Gerd P Pfeifer, Jie Liu, Xiaotian Zhang
3'HS1 CTCF binding site in human β-globin locus regulates fetal hemoglobin expression. eLife 10 (2021)
Xinjun Li, Fan Feng, Hongxi Pu, Wai Yan Leung, Jie Liu
scHiCTools: A computational toolbox for analyzing single-cell Hi-C data. PLoS computational biology 17 (5) (2021)
Hyeon-Jin Kim, Galip Gürkan Yardimci, Giancarlo Bonora, Vijay Ramani, Jie Liu, Ruolan Qiu, Choli Lee, Jennifer Hesson, Carol B Ware, Jay Shendure, Zhijun Duan, William Stafford Noble
Capturing cell type-specific chromatin compartment patterns by applying topic modeling to single-cell Hi-C data. PLoS computational biology 16 (9) (2020)
Jie Liu, John T Halloran, Jeffrey A Bilmes, Riza M Daza, Choli Lee, Elisabeth M Mahen, Donna Prunkard, Chaozhong Song, Sibel Blau, Michael O Dorschner, Vijayakrishna K Gadi, Jay Shendure, C Anthony Blau, William Stafford Noble
Comprehensive statistical inference of the clonal structure of cancer from multiple biopsies. Scientific reports 7 (1) (2017)

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Publication Activity (10 Years)

Top Topics

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Jie Liu