Choli Lee

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 17

Top Topics

Dna Methylation

Single Molecule

Top Venues

Nature biotechnology

Scientific reports

This page only lists publications with an associated author ORCID identifier.

Publications

Jean-Beno Æt Lalanne, Samuel G Regalado, Silvia Domcke, Diego Calderon, Beth K Martin, Xiaoyi Li, Tony Li, Chase C Suiter, Choli Lee, Cole Trapnell, Jay Shendure
Multiplex profiling of developmental cis-regulatory elements with quantitative single-cell expression reporters. Nature methods 21 (6) (2024)
Wei Chen, Junhong Choi, Xiaoyi Li, Jenny F Nathans, Beth K Martin, Wei Yang, Nobuhiko Hamazaki, Chengxiang Qiu, Jean-Benoît Lalanne, Samuel Regalado, Haedong Kim, Vikram Agarwal, Eva Nichols, Anh Leith, Choli Lee, Jay Shendure
Symbolic recording of signalling and cis-regulatory element activity to DNA. Nature (2024)
Wei Chen, Junhong Choi, Xiaoyi Li, Jenny F Nathans, Beth K Martin, Wei Yang, Nobuhiko Hamazaki, Chengxiang Qiu, Jean-Benoît Lalanne, Samuel Regalado, Haedong Kim, Vikram Agarwal, Eva Nichols, Anh Leith, Choli Lee, Jay Shendure
Symbolic recording of signalling and cis-regulatory element activity to DNA. Nature 632 (8027) (2024)
Wei Chen, Junhong Choi, Xiaoyi Li, Jenny F Nathans, Beth K Martin, Wei Yang, Nobuhiko Hamazaki, Chengxiang Qiu, Jean-Benoît Lalanne, Samuel Regalado, Haedong Kim, Vikram Agarwal, Eva Nichols, Anh Leith, Choli Lee, Jay Shendure
Symbolic recording of signalling and cis-regulatory element activity to DNA. Nature 632 (8027) (2024)
Jean-Beno Æt Lalanne, Samuel G Regalado, Silvia Domcke, Diego Calderon, Beth K Martin, Xiaoyi Li, Tony Li, Chase C Suiter, Choli Lee, Cole Trapnell, Jay Shendure
Multiplex profiling of developmental cis-regulatory elements with quantitative single-cell expression reporters. Nature methods (2024)
Jean-Beno Æt Lalanne, Samuel G Regalado, Silvia Domcke, Diego Calderon, Beth K Martin, Xiaoyi Li, Tony Li, Chase C Suiter, Choli Lee, Cole Trapnell, Jay Shendure
Multiplex profiling of developmental cis-regulatory elements with quantitative single-cell expression reporters. Nature methods 21 (6) (2024)
Wei Chen, Junhong Choi, Xiaoyi Li, Jenny F Nathans, Beth K Martin, Wei Yang, Nobuhiko Hamazaki, Chengxiang Qiu, Jean-Benoît Lalanne, Samuel Regalado, Haedong Kim, Vikram Agarwal, Eva Nichols, Anh Leith, Choli Lee, Jay Shendure
Symbolic recording of signalling and cis-regulatory element activity to DNA. Nature (2024)
Jean-Beno Æt Lalanne, Samuel G Regalado, Silvia Domcke, Diego Calderon, Beth K Martin, Xiaoyi Li, Tony Li, Chase C Suiter, Choli Lee, Cole Trapnell, Jay Shendure
Multiplex profiling of developmental cis-regulatory elements with quantitative single-cell expression reporters. Nature methods 21 (6) (2024)
Wei Chen, Junhong Choi, Xiaoyi Li, Jenny F Nathans, Beth K Martin, Wei Yang, Nobuhiko Hamazaki, Chengxiang Qiu, Jean-Benoît Lalanne, Samuel Regalado, Haedong Kim, Vikram Agarwal, Eva Nichols, Anh Leith, Choli Lee, Jay Shendure
Symbolic recording of signalling and cis-regulatory element activity to DNA. Nature 632 (8027) (2024)
Wei Chen, Junhong Choi, Xiaoyi Li, Jenny F Nathans, Beth K Martin, Wei Yang, Nobuhiko Hamazaki, Chengxiang Qiu, Jean-Benoît Lalanne, Samuel Regalado, Haedong Kim, Vikram Agarwal, Eva Nichols, Anh Leith, Choli Lee, Jay Shendure
Symbolic recording of signalling and cis-regulatory element activity to DNA. Nature 632 (8027) (2024)
Nobuhiko Hamazaki, Wei Yang, Connor A Kubo, Chengxiang Qiu, Beth K Martin, Riddhiman K Garge, Samuel G Regalado, Eva K Nichols, Sriram Pendyala, Nicholas Bradley, Douglas M Fowler, Choli Lee, Riza M Daza, Sanjay Srivatsan, Jay Shendure
Retinoic acid induces human gastruloids with posterior embryo-like structures. Nature cell biology (2024)
Jean-Beno Æt Lalanne, Samuel G Regalado, Silvia Domcke, Diego Calderon, Beth K Martin, Xiaoyi Li, Tony Li, Chase C Suiter, Choli Lee, Cole Trapnell, Jay Shendure
Multiplex profiling of developmental cis-regulatory elements with quantitative single-cell expression reporters. Nature methods 21 (6) (2024)
Junhong Choi, Wei Chen, Anna Minkina, Florence M Chardon, Chase C Suiter, Samuel G Regalado, Silvia Domcke, Nobuhiko Hamazaki, Choli Lee, Beth Martin, Riza M Daza, Jay Shendure
A time-resolved, multi-symbol molecular recorder via sequential genome editing. Nature 608 (7921) (2022)
Junhong Choi, Wei Chen, Chase C Suiter, Choli Lee, Florence M Chardon, Wei Yang, Anh Leith, Riza M Daza, Beth K Martin, Jay Shendure
Precise genomic deletions using paired prime editing. Nature biotechnology (2021)
Hyeon-Jin Kim, Galip Gürkan Yardimci, Giancarlo Bonora, Vijay Ramani, Jie Liu, Ruolan Qiu, Choli Lee, Jennifer Hesson, Carol B Ware, Jay Shendure, Zhijun Duan, William Stafford Noble
Capturing cell type-specific chromatin compartment patterns by applying topic modeling to single-cell Hi-C data. PLoS computational biology 16 (9) (2020)
Junyue Cao, Jonathan S Packer, Vijay Ramani, Darren A Cusanovich, Chau Huynh, Riza Daza, Xiaojie Qiu, Choli Lee, Scott N Furlan, Frank J Steemers, Andrew C Adey, Robert H Waterston, Cole Trapnell, Jay Shendure
Comprehensive single-cell transcriptional profiling of a multicellular organism. Science (New York, N.Y.) 357 (6352) (2017)
Jie Liu, John T Halloran, Jeffrey A Bilmes, Riza M Daza, Choli Lee, Elisabeth M Mahen, Donna Prunkard, Chaozhong Song, Sibel Blau, Michael O Dorschner, Vijayakrishna K Gadi, Jay Shendure, C Anthony Blau, William Stafford Noble
Comprehensive statistical inference of the clonal structure of cancer from multiple biopsies. Scientific reports 7 (1) (2017)