Jie Zheng

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 17

Top Venues

Bioinformatics (Oxford, England)

BMC bioinformatics

PloS one

BioMed research international

ShanghaiTech University

University of California Riverside (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

ShanghaiTech University Jul 04 2018

China

Associate Professor :: School of Information Science and Technology

Nanyang Technological University - Jul 02 2018

Singapore

Assistant Professor :: School of Computer Science and Engineering

National Institutes of Health

United States

Visiting Fellow and Research Scientist :: National Center for Biotechnological Information

Education History

University of California Riverside

United States

PHD :: Computer Science & Engineering

Publications

Zongquan Li, Pengxuan Ren, Hao Yang, Jie Zheng, Fang Bai
TEFDTA: a transformer encoder and fingerprint representation combined prediction method for bonded and non-bonded drug-target affinities. Bioinformatics (Oxford, England) 40 (1) (2024)
Zongquan Li, Pengxuan Ren, Hao Yang, Jie Zheng, Fang Bai
TEFDTA: a transformer encoder and fingerprint representation combined prediction method for bonded and non-bonded drug-target affinities. Bioinformatics (Oxford, England) 40 (1) (2024)
Xin Liu, Jieni Hu, Jie Zheng
SL-Miner: a web server for mining evidence and prioritization of cancer-specific synthetic lethality. Bioinformatics (Oxford, England) 40 (2) (2024)
Xin Liu, Jieni Hu, Jie Zheng
SL-Miner: a web server for mining evidence and prioritization of cancer-specific synthetic lethality. Bioinformatics (Oxford, England) 40 (2) (2024)
Xin Liu, Jieni Hu, Jie Zheng
SL-Miner: a web server for mining evidence and prioritization of cancer-specific synthetic lethality. Bioinformatics (Oxford, England) 40 (2) (2024)
Zongquan Li, Pengxuan Ren, Hao Yang, Jie Zheng, Fang Bai
TEFDTA: a transformer encoder and fingerprint representation combined prediction method for bonded and non-bonded drug-target affinities. Bioinformatics (Oxford, England) 40 (1) (2024)
Xin Liu, Jieni Hu, Jie Zheng
SL-Miner: a web server for mining evidence and prioritization of cancer-specific synthetic lethality. Bioinformatics (Oxford, England) 40 (2) (2024)
Zongquan Li, Pengxuan Ren, Hao Yang, Jie Zheng, Fang Bai
TEFDTA: a transformer encoder and fingerprint representation combined prediction method for bonded and non-bonded drug-target affinities. Bioinformatics (Oxford, England) 40 (1) (2024)
Zongquan Li, Pengxuan Ren, Hao Yang, Jie Zheng, Fang Bai
TEFDTA: a transformer encoder and fingerprint representation combined prediction method for bonded and non-bonded drug-target affinities. Bioinformatics (Oxford, England) 40 (1) (2024)
Ke Zhang, Min Wu, Yong Liu, Yimiao Feng, Jie Zheng
KR4SL: knowledge graph reasoning for explainable prediction of synthetic lethality. Bioinformatics (Oxford, England) 39 (39 Suppl 1) (2023)
Ke Zhang, Chenxi Wang, Liping Sun, Jie Zheng
Prediction of gene co-expression from chromatin contacts with graph attention network. Bioinformatics (Oxford, England) 38 (19) (2022)
Jie Wang, Min Wu, Xuhui Huang, Li Wang, Sophia Zhang, Hui Liu, Jie Zheng
SynLethDB 2.0: a web-based knowledge graph database on synthetic lethality for novel anticancer drug discovery. Database : the journal of biological databases and curation 2022 (2022)
Xin Liu, Jiale Yu, Siyu Tao, Beiyuan Yang, Shike Wang, Lin Wang, Fang Bai, Jie Zheng
PiLSL: pairwise interaction learning-based graph neural network for synthetic lethality prediction in human cancers. Bioinformatics (Oxford, England) 38 (Supplement_2) (2022)
Shike Wang, Yimiao Feng, Xin Liu, Yong Liu, Min Wu, Jie Zheng
NSF4SL: negative-sample-free contrastive learning for ranking synthetic lethal partner genes in human cancers. Bioinformatics (Oxford, England) 38 (Supplement_2) (2022)
Xinnan Dai, Fan Xu, Shike Wang, Piyushkumar A Mundra, Jie Zheng
PIKE-R2P: Protein-protein interaction network-based knowledge embedding with graph neural network for single-cell RNA to protein prediction. BMC bioinformatics 22 (Suppl 6) (2021)
Xin Wang, Jie Zheng
Velo-Predictor: an ensemble learning pipeline for RNA velocity prediction. BMC bioinformatics 22 (Suppl 10) (2021)
Ket Hing Chong, Xiaomeng Zhang, Jie Zheng
Dynamical analysis of cellular ageing by modeling of gene regulatory network based attractor landscape. PloS one 13 (6) (2018)
Xue-juan Li, Shital K Mishra, Min Wu, Fan Zhang, Jie Zheng
Syn-lethality: an integrative knowledge base of synthetic lethality towards discovery of selective anticancer therapies. BioMed research international 2014 (2014)

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Publication Activity (10 Years)

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Jie Zheng