Jin Gu

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 37

Top Topics

Advanced Non Small Cell Lung Cancer

Advance Care Planning

Neuroendocrine Tumors

Top Venues

Nature communications

Communications biology

Genome medicine

This page only lists publications with an associated author ORCID identifier.

Publications

Ziming Jiang, Yanhong Wu, Yuxin Miao, Kaige Deng, Fan Yang, Shuhuan Xu, Yupeng Wang, Renke You, Lei Zhang, Yuhan Fan, Wenbo Guo, Qiuyu Lian, Lei Chen, Xuegong Zhang, Yong-Chang Zheng, Jin Gu
HCCDB v2.0: Decompose Expression Variations by Single-cell RNA-seq and Spatial Transcriptomics in HCC. Genomics, proteomics & bioinformatics 22 (1) (2024)
Minsheng Hao, Erpai Luo, Yixin Chen, Yanhong Wu, Chen Li, Sijie Chen, Haoxiang Gao, Haiyang Bian, Jin Gu, Lei Wei, Xuegong Zhang
STEM enables mapping of single-cell and spatial transcriptomics data with transfer learning. Communications biology 7 (1) (2024)
Zeyu Chen, Yuxin Miao, Zhiyuan Tan, Qifan Hu, Yanhong Wu, Xinqi Li, Wenbo Guo, Jin Gu
scCancer2: data-driven in-depth annotations of the tumor microenvironment at single-level resolution. Bioinformatics (Oxford, England) 40 (2) (2024)
Zeyu Chen, Yuxin Miao, Zhiyuan Tan, Qifan Hu, Yanhong Wu, Xinqi Li, Wenbo Guo, Jin Gu
scCancer2: data-driven in-depth annotations of the tumor microenvironment at single-level resolution. Bioinformatics (Oxford, England) 40 (2) (2024)
Yanmei Zhang, Qifan Hu, Yuquan Pei, Hao Luo, Zixuan Wang, Xinxin Xu, Qing Zhang, Jianli Dai, Qianqian Wang, Zilian Fan, Yongcong Fang, Min Ye, Binhan Li, Mailin Chen, Qi Xue, Qingfeng Zheng, Shulin Zhang, Miao Huang, Ting Zhang, Jin Gu, Zhuo Xiong
A patient-specific lung cancer assembloid model with heterogeneous tumor microenvironments. Nature communications 15 (1) (2024)
Minsheng Hao, Erpai Luo, Yixin Chen, Yanhong Wu, Chen Li, Sijie Chen, Haoxiang Gao, Haiyang Bian, Jin Gu, Lei Wei, Xuegong Zhang
STEM enables mapping of single-cell and spatial transcriptomics data with transfer learning. Communications biology 7 (1) (2024)
Yanmei Zhang, Qifan Hu, Yuquan Pei, Hao Luo, Zixuan Wang, Xinxin Xu, Qing Zhang, Jianli Dai, Qianqian Wang, Zilian Fan, Yongcong Fang, Min Ye, Binhan Li, Mailin Chen, Qi Xue, Qingfeng Zheng, Shulin Zhang, Miao Huang, Ting Zhang, Jin Gu, Zhuo Xiong
A patient-specific lung cancer assembloid model with heterogeneous tumor microenvironments. Nature communications 15 (1) (2024)
Zeyu Chen, Yuxin Miao, Zhiyuan Tan, Qifan Hu, Yanhong Wu, Xinqi Li, Wenbo Guo, Jin Gu
scCancer2: data-driven in-depth annotations of the tumor microenvironment at single-level resolution. Bioinformatics (Oxford, England) 40 (2) (2024)
Ziming Jiang, Yanhong Wu, Yuxin Miao, Kaige Deng, Fan Yang, Shuhuan Xu, Yupeng Wang, Renke You, Lei Zhang, Yuhan Fan, Wenbo Guo, Qiuyu Lian, Lei Chen, Xuegong Zhang, Yong-Chang Zheng, Jin Gu
HCCDB v2.0: Decompose Expression Variations by Single-cell RNA-seq and Spatial Transcriptomics in HCC. Genomics, proteomics & bioinformatics 22 (1) (2024)
Yanmei Zhang, Qifan Hu, Yuquan Pei, Hao Luo, Zixuan Wang, Xinxin Xu, Qing Zhang, Jianli Dai, Qianqian Wang, Zilian Fan, Yongcong Fang, Min Ye, Binhan Li, Mailin Chen, Qi Xue, Qingfeng Zheng, Shulin Zhang, Miao Huang, Ting Zhang, Jin Gu, Zhuo Xiong
A patient-specific lung cancer assembloid model with heterogeneous tumor microenvironments. Nature communications 15 (1) (2024)
Zeyu Chen, Yuxin Miao, Zhiyuan Tan, Qifan Hu, Yanhong Wu, Xinqi Li, Wenbo Guo, Jin Gu
scCancer2: data-driven in-depth annotations of the tumor microenvironment at single-level resolution. Bioinformatics (Oxford, England) 40 (2) (2024)
Lei Chen, Chong Zhang, Ruidong Xue, Mo Liu, Jian Bai, Jinxia Bao, Yin Wang, Nanhai Jiang, Zhixuan Li, Wenwen Wang, Ruiru Wang, Bo Zheng, Airong Yang, Ji Hu, Ke Liu, Siyun Shen, Yangqianwen Zhang, Mixue Bai, Yan Wang, Yanjing Zhu, Shuai Yang, Qiang Gao, Jin Gu, Wangxin Guo, Xin Wei Wang, Hidewaki Nakagawa, Ning Zhang, Lin Wu, Steven G Rozen, Fan Bai, Hong-Yang Wang
Deep whole-genome analysis of 494 hepatocellular carcinomas. Nature 627 (8004) (2024)
Lei Chen, Chong Zhang, Ruidong Xue, Mo Liu, Jian Bai, Jinxia Bao, Yin Wang, Nanhai Jiang, Zhixuan Li, Wenwen Wang, Ruiru Wang, Bo Zheng, Airong Yang, Ji Hu, Ke Liu, Siyun Shen, Yangqianwen Zhang, Mixue Bai, Yan Wang, Yanjing Zhu, Shuai Yang, Qiang Gao, Jin Gu, Wangxin Guo, Xin Wei Wang, Hidewaki Nakagawa, Ning Zhang, Lin Wu, Steven G Rozen, Fan Bai, Hong-Yang Wang
Deep whole-genome analysis of 494 hepatocellular carcinomas. Nature 627 (8004) (2024)
Minsheng Hao, Erpai Luo, Yixin Chen, Yanhong Wu, Chen Li, Sijie Chen, Haoxiang Gao, Haiyang Bian, Jin Gu, Lei Wei, Xuegong Zhang
STEM enables mapping of single-cell and spatial transcriptomics data with transfer learning. Communications biology 7 (1) (2024)
Lei Chen, Chong Zhang, Ruidong Xue, Mo Liu, Jian Bai, Jinxia Bao, Yin Wang, Nanhai Jiang, Zhixuan Li, Wenwen Wang, Ruiru Wang, Bo Zheng, Airong Yang, Ji Hu, Ke Liu, Siyun Shen, Yangqianwen Zhang, Mixue Bai, Yan Wang, Yanjing Zhu, Shuai Yang, Qiang Gao, Jin Gu, Wangxin Guo, Xin Wei Wang, Hidewaki Nakagawa, Ning Zhang, Lin Wu, Steven G Rozen, Fan Bai, Hong-Yang Wang
Deep whole-genome analysis of 494 hepatocellular carcinomas. Nature 627 (8004) (2024)
Ziming Jiang, Yanhong Wu, Yuxin Miao, Kaige Deng, Fan Yang, Shuhuan Xu, Yupeng Wang, Renke You, Lei Zhang, Yuhan Fan, Wenbo Guo, Qiuyu Lian, Lei Chen, Xuegong Zhang, Yong-Chang Zheng, Jin Gu
HCCDB v2.0: Decompose Expression Variations by Single-cell RNA-seq and Spatial Transcriptomics in HCC. Genomics, proteomics & bioinformatics 22 (1) (2024)
Lei Chen, Chong Zhang, Ruidong Xue, Mo Liu, Jian Bai, Jinxia Bao, Yin Wang, Nanhai Jiang, Zhixuan Li, Wenwen Wang, Ruiru Wang, Bo Zheng, Airong Yang, Ji Hu, Ke Liu, Siyun Shen, Yangqianwen Zhang, Mixue Bai, Yan Wang, Yanjing Zhu, Shuai Yang, Qiang Gao, Jin Gu, Wangxin Guo, Xin Wei Wang, Hidewaki Nakagawa, Ning Zhang, Lin Wu, Steven G Rozen, Fan Bai, Hong-Yang Wang
Deep whole-genome analysis of 494 hepatocellular carcinomas. Nature (2024)
Nan Yan, Weiyan Xie, Dongfang Wang, Qiuyue Fang, Jing Guo, Yiyuan Chen, Xinqi Li, Lei Gong, Jialin Wang, Wenbo Guo, Xuegong Zhang, Yazhuo Zhang, Jin Gu, Chuzhong Li
Single-cell transcriptomic analysis reveals tumor cell heterogeneity and immune microenvironment features of pituitary neuroendocrine tumors. Genome medicine 16 (1) (2024)
Yanmei Zhang, Qifan Hu, Yuquan Pei, Hao Luo, Zixuan Wang, Xinxin Xu, Qing Zhang, Jianli Dai, Qianqian Wang, Zilian Fan, Yongcong Fang, Min Ye, Binhan Li, Mailin Chen, Qi Xue, Qingfeng Zheng, Shulin Zhang, Miao Huang, Ting Zhang, Jin Gu, Zhuo Xiong
A patient-specific lung cancer assembloid model with heterogeneous tumor microenvironments. Nature communications 15 (1) (2024)
Nan Yan, Weiyan Xie, Dongfang Wang, Qiuyue Fang, Jing Guo, Yiyuan Chen, Xinqi Li, Lei Gong, Jialin Wang, Wenbo Guo, Xuegong Zhang, Yazhuo Zhang, Jin Gu, Chuzhong Li
Single-cell transcriptomic analysis reveals tumor cell heterogeneity and immune microenvironment features of pituitary neuroendocrine tumors. Genome medicine 16 (1) (2024)
Nan Yan, Weiyan Xie, Dongfang Wang, Qiuyue Fang, Jing Guo, Yiyuan Chen, Xinqi Li, Lei Gong, Jialin Wang, Wenbo Guo, Xuegong Zhang, Yazhuo Zhang, Jin Gu, Chuzhong Li
Single-cell transcriptomic analysis reveals tumor cell heterogeneity and immune microenvironment features of pituitary neuroendocrine tumors. Genome medicine 16 (1) (2024)
Lei Chen, Chong Zhang, Ruidong Xue, Mo Liu, Jian Bai, Jinxia Bao, Yin Wang, Nanhai Jiang, Zhixuan Li, Wenwen Wang, Ruiru Wang, Bo Zheng, Airong Yang, Ji Hu, Ke Liu, Siyun Shen, Yangqianwen Zhang, Mixue Bai, Yan Wang, Yanjing Zhu, Shuai Yang, Qiang Gao, Jin Gu, Wangxin Guo, Xin Wei Wang, Hidewaki Nakagawa, Ning Zhang, Lin Wu, Steven G Rozen, Fan Bai, Hong-Yang Wang
Deep whole-genome analysis of 494 hepatocellular carcinomas. Nature (2024)
Minsheng Hao, Erpai Luo, Yixin Chen, Yanhong Wu, Chen Li, Sijie Chen, Haoxiang Gao, Haiyang Bian, Jin Gu, Lei Wei, Xuegong Zhang
STEM enables mapping of single-cell and spatial transcriptomics data with transfer learning. Communications biology 7 (1) (2024)
Lei Chen, Chong Zhang, Ruidong Xue, Mo Liu, Jian Bai, Jinxia Bao, Yin Wang, Nanhai Jiang, Zhixuan Li, Wenwen Wang, Ruiru Wang, Bo Zheng, Airong Yang, Ji Hu, Ke Liu, Siyun Shen, Yangqianwen Zhang, Mixue Bai, Yan Wang, Yanjing Zhu, Shuai Yang, Qiang Gao, Jin Gu, Wangxin Guo, Xin Wei Wang, Hidewaki Nakagawa, Ning Zhang, Lin Wu, Steven G Rozen, Fan Bai, Hong-Yang Wang
Deep whole-genome analysis of 494 hepatocellular carcinomas. Nature (2024)
Minsheng Hao, Erpai Luo, Yixin Chen, Yanhong Wu, Chen Li, Sijie Chen, Haoxiang Gao, Haiyang Bian, Jin Gu, Lei Wei, Xuegong Zhang
STEM enables mapping of single-cell and spatial transcriptomics data with transfer learning. Communications biology 7 (1) (2024)
Nan Yan, Weiyan Xie, Dongfang Wang, Qiuyue Fang, Jing Guo, Yiyuan Chen, Xinqi Li, Lei Gong, Jialin Wang, Wenbo Guo, Xuegong Zhang, Yazhuo Zhang, Jin Gu, Chuzhong Li
Single-cell transcriptomic analysis reveals tumor cell heterogeneity and immune microenvironment features of pituitary neuroendocrine tumors. Genome medicine 16 (1) (2024)
Yang Zhang, Gan Liu, Minzhen Tao, Hui Ning, Wei Guo, Gaofei Yin, Wen Gao, Lifei Feng, Jin Gu, Zhen Xie, Zhigang Huang
Integrated transcriptome study of the tumor microenvironment for treatment response prediction in male predominant hypopharyngeal carcinoma. Nature communications 14 (1) (2023)
Yang Zhang, Gan Liu, Minzhen Tao, Hui Ning, Wei Guo, Gaofei Yin, Wen Gao, Lifei Feng, Jin Gu, Zhen Xie, Zhigang Huang
Integrated transcriptome study of the tumor microenvironment for treatment response prediction in male predominant hypopharyngeal carcinoma. Nature communications 14 (1) (2023)
Yang Zhang, Gan Liu, Minzhen Tao, Hui Ning, Wei Guo, Gaofei Yin, Wen Gao, Lifei Feng, Jin Gu, Zhen Xie, Zhigang Huang
Integrated transcriptome study of the tumor microenvironment for treatment response prediction in male predominant hypopharyngeal carcinoma. Nature communications 14 (1) (2023)
Yang Zhang, Gan Liu, Minzhen Tao, Hui Ning, Wei Guo, Gaofei Yin, Wen Gao, Lifei Feng, Jin Gu, Zhen Xie, Zhigang Huang
Integrated transcriptome study of the tumor microenvironment for treatment response prediction in male predominant hypopharyngeal carcinoma. Nature communications 14 (1) (2023)
Yingchi Zhang, Shicheng Wang, Jingliao Zhang, Chao Liu, Xinqi Li, Wenbo Guo, Yongjuan Duan, Xiaoyan Chen, Suyu Zong, Jiarui Zheng, Yixuan Wu, Xiaoli Chen, Xuelian Cheng, Yanxia Chang, Yue Wang, Feng Ding, Wenyu Yang, Xiaojuan Chen, Ye Guo, Li Zhang, Yumei Chen, Yao Zou, Xiao-Fan Zhu, Jin Gu, Tao Cheng
Elucidating minimal residual disease of paediatric B-cell acute lymphoblastic leukaemia by single-cell analysis. Nature cell biology 24 (2) (2022)
Rui Wu, Wenbo Guo, Xinyao Qiu, Shicheng Wang, Chengjun Sui, Qiuyu Lian, Jianmin Wu, Yiran Shan, Zhao Yang, Shuai Yang, Tong Wu, Kaiting Wang, Yanjing Zhu, Shan Wang, Changyi Liu, Yangqianwen Zhang, Bo Zheng, Zhixuan Li, Yani Zhang, Siyun Shen, Yan Zhao, Wenwen Wang, Jinxia Bao, Ji Hu, Xuan Wu, Xiaoqing Jiang, Hong-Yang Wang, Jin Gu, Lei Chen
Comprehensive analysis of spatial architecture in primary liver cancer. Science advances 7 (51) (2021)
Gang Yang, Wenfang Guan, Zhe Cao, Wenbo Guo, Guangbing Xiong, Fangyu Zhao, Mengyu Feng, Jiangdong Qiu, Yueze Liu, Michael Q Zhang, Lei You, Taiping Zhang, Yupei Zhao, Jin Gu
Integrative Genomic Analysis of Gemcitabine Resistance in Pancreatic Cancer by Patient-derived Xenograft Models. Clinical cancer research : an official journal of the American Association for Cancer Research 27 (12) (2021)
Francesca Ricciardiello, Yang Gang, Roberta Palorini, Quanxiao Li, Marco Giampà, Fangyu Zhao, Lei You, Barbara La Ferla, Humberto De Vitto, Wenfang Guan, Jin Gu, Taiping Zhang, Yupei Zhao, Ferdinando Chiaradonna
Hexosamine pathway inhibition overcomes pancreatic cancer resistance to gemcitabine through unfolded protein response and EGFR-Akt pathway modulation. Oncogene 39 (20) (2020)
Zhong-Guo Zhang, Fei Ma, Shuang Zhao, Xiaoyu Yang, Fang Liu, Chenghai Xue, Liren Liu, Jin Gu, Haozhe Piao
Effects of somatic alterations at pathway level are more mechanism-explanatory and clinically applicable to quantity of liver metastases of colorectal cancer. Cancer medicine 8 (10) (2019)
Dongfang Wang, Yanjing Zhu, Jing Tang, Qiuyu Lian, Guijuan Luo, Wen Wen, Michael Q Zhang, Hongyang Wang, Lei Chen, Jin Gu
Integrative molecular analysis of metastatic hepatocellular carcinoma. BMC medical genomics 12 (1) (2019)
Yang Yang, Lei Chen, Jin Gu, Hanshuo Zhang, Jiapei Yuan, Qiuyu Lian, Guishuai Lv, Siqi Wang, Yang Wu, Yu-Cheng T Yang, Dongfang Wang, Yang Liu, Jing Tang, Guijuan Luo, Yang Li, Long Hu, Xinbao Sun, Dong Wang, Mingzhou Guo, Qiaoran Xi, Jianzhong Xi, Hongyang Wang, Michael Q Zhang, Zhi John Lu
Recurrently deregulated lncRNAs in hepatocellular carcinoma. Nature communications 8 (2017)