Joanna Trylska

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 35

Top Topics

Molecular Dynamics Simulations

Endoplasmic Reticulum

Top Venues

PLoS computational biology

Proceedings of the National Academy of Sciences of the United States of America

International journal of molecular sciences

Scientific reports

This page only lists publications with an associated author ORCID identifier.

Publications

Piotr Chyży, Marta Kulik, Ai Shinobu, Suyong Re, Yuji Sugita, Joanna Trylska
Molecular dynamics in multidimensional space explains how mutations affect the association path of neomycin to a riboswitch. Proceedings of the National Academy of Sciences of the United States of America 121 (15) (2024)
Piotr Chyży, Marta Kulik, Ai Shinobu, Suyong Re, Yuji Sugita, Joanna Trylska
Molecular dynamics in multidimensional space explains how mutations affect the association path of neomycin to a riboswitch. Proceedings of the National Academy of Sciences of the United States of America 121 (15) (2024)
Piotr Chyży, Marta Kulik, Ai Shinobu, Suyong Re, Yuji Sugita, Joanna Trylska
Molecular dynamics in multidimensional space explains how mutations affect the association path of neomycin to a riboswitch. Proceedings of the National Academy of Sciences of the United States of America 121 (15) (2024)
Piotr Chyży, Marta Kulik, Ai Shinobu, Suyong Re, Yuji Sugita, Joanna Trylska
Molecular dynamics in multidimensional space explains how mutations affect the association path of neomycin to a riboswitch. Proceedings of the National Academy of Sciences of the United States of America 121 (15) (2024)
Piotr Chyży, Marta Kulik, Ai Shinobu, Suyong Re, Yuji Sugita, Joanna Trylska
Molecular dynamics in multidimensional space explains how mutations affect the association path of neomycin to a riboswitch. Proceedings of the National Academy of Sciences of the United States of America 121 (15) (2024)
Uladzislava Tsylents, Izabela Siekierska, Joanna Trylska
Peptide nucleic acid conjugates and their antimicrobial applications-a mini-review. European biophysics journal : EBJ (2023)
Alicja Dyzma, Beata Wielgus-Kutrowska, Agnieszka Girstun, Zoe Jelić Matošević, Krzysztof Staroń, Branimir Bertoša, Joanna Trylska, Agnieszka Bzowska
Trimeric Architecture Ensures the Stability and Biological Activity of the Calf Purine Nucleoside Phosphorylase: In Silico and In Vitro Studies of Monomeric and Trimeric Forms of the Enzyme. International journal of molecular sciences 24 (3) (2023)
Alicja Dyzma, Beata Wielgus-Kutrowska, Agnieszka Girstun, Zoe Jelić Matošević, Krzysztof Staroń, Branimir Bertoša, Joanna Trylska, Agnieszka Bzowska
Trimeric Architecture Ensures the Stability and Biological Activity of the Calf Purine Nucleoside Phosphorylase: In Silico and In Vitro Studies of Monomeric and Trimeric Forms of the Enzyme. International journal of molecular sciences 24 (3) (2023)
Natalia Ostrowska, Michael F Feig, Joanna Trylska
Varying molecular interactions explain aspects of crowder-dependent enzyme function of a viral protease. PLoS computational biology 19 (4) (2023)
Natalia Ostrowska, Michael F Feig, Joanna Trylska
Varying molecular interactions explain aspects of crowder-dependent enzyme function of a viral protease. PLoS computational biology 19 (4) (2023)
Natalia Ostrowska, Michael F Feig, Joanna Trylska
Varying molecular interactions explain aspects of crowder-dependent enzyme function of a viral protease. PLoS computational biology 19 (4) (2023)
Alicja Dyzma, Beata Wielgus-Kutrowska, Agnieszka Girstun, Zoe Jelić Matošević, Krzysztof Staroń, Branimir Bertoša, Joanna Trylska, Agnieszka Bzowska
Trimeric Architecture Ensures the Stability and Biological Activity of the Calf Purine Nucleoside Phosphorylase: In Silico and In Vitro Studies of Monomeric and Trimeric Forms of the Enzyme. International journal of molecular sciences 24 (3) (2023)
Natalia Ostrowska, Michael Feig, Joanna Trylska
Varying molecular interactions explain aspects of crowder-dependent enzyme function of a viral protease. PLoS computational biology 19 (4) (2023)
Natalia Ostrowska, Michael F Feig, Joanna Trylska
Varying molecular interactions explain aspects of crowder-dependent enzyme function of a viral protease. PLoS computational biology 19 (4) (2023)
Julia Macyszyn, Piotr Chyży, Michal Burmistrz, Małgorzata Lobka, Joanna Miszkiewicz, Monika Wojciechowska, Joanna Trylska
Structural dynamics influences the antibacterial activity of a cell-penetrating peptide (KFF) 3 K. Scientific reports 13 (1) (2023)
Julia Macyszyn, Michal Burmistrz, Adam Mieczkowski, Monika Wojciechowska, Joanna Trylska
Conjugates of Aminoglycosides with Stapled Peptides as a Way to Target Antibiotic-Resistant Bacteria. ACS omega 8 (21) (2023)
Natalia Ostrowska, Michael F Feig, Joanna Trylska
Varying molecular interactions explain aspects of crowder-dependent enzyme function of a viral protease. PLoS computational biology 19 (4) (2023)
Magdalena Chrabąszczewska, Maria Winiewska-Szajewska, Natalia Ostrowska, Elżbieta Bojarska, Janusz Stępiński, Łukasz Mancewicz, Maciej Łukaszewicz, Joanna Trylska, Michał Taube, Maciej Kozak, Edward Darżynkiewicz, Renata Grzela
Insight into the Binding and Hydrolytic Preferences of hNudt16 Based on Nucleotide Diphosphate Substrates. International journal of molecular sciences 22 (20) (2021)
Marcin Równicki, Robert Lasek, Joanna Trylska, Dariusz Bartosik
Targeting Type II Toxin-Antitoxin Systems as Antibacterial Strategies. Toxins 12 (9) (2020)
Tomasz Pieńko, Joanna Trylska
Extracellular loops of BtuB facilitate transport of vitamin B12 through the outer membrane of E. coli. PLoS computational biology 16 (7) (2020)
Monika Wojciechowska, Joanna Miszkiewicz, Joanna Trylska
Conformational Changes of Anoplin, W-MreB1-9, and (KFF)3K Peptides near the Membranes. International journal of molecular sciences 21 (24) (2020)
Maciej Jasiński, Joanna Miszkiewicz, Michael F Feig, Joanna Trylska
Thermal Stability of Peptide Nucleic Acid Complexes. The journal of physical chemistry. B 123 (39) (2019)
Ksenia Maximova, Jakub Wojtczak, Joanna Trylska
Enzymatic activity of human immunodeficiency virus type 1 protease in crowded solutions. European biophysics journal : EBJ 48 (7) (2019)
Beata Miedziak, Anna Dobieżyńska, Zbigniew M Darżynkiewicz, Julia Bartkowska, Joanna Miszkiewicz, Joanna Kowalska, Marcin Warminski, Michal Tyras, Joanna Trylska, Jacek Jemielity, Edward Darzynkiewicz, Renata Grzela
Kinetic analysis of IFIT1 and IFIT5 interactions with different native and engineered RNAs and its consequences for designing mRNA-based therapeutics. RNA (New York, N.Y.) 26 (1) (2019)
Tomasz Pieńko, Joanna Trylska
Computational Methods Used to Explore Transport Events in Biological Systems. Journal of chemical information and modeling 59 (5) (2019)
Maciej Jasiński, Michael F Feig, Joanna Trylska
Improved Force Fields for Peptide Nucleic Acids with Optimized Backbone Torsion Parameters. Journal of chemical theory and computation 14 (7) (2018)
Aleksandra J Wierzba, Ksenia Maximova, Aleksandra Wincenciuk, Marcin Równicki, Monika Wojciechowska, Ebba Nexø, Joanna Trylska, Dorota Gryko
Does a Conjugation Site Affect Transport of Vitamin B12 -Peptide Nucleic Acid Conjugates into Bacterial Cells? Chemistry (Weinheim an der Bergstrasse, Germany) 24 (70) (2018)
Narayana Murthy Sabbavarapu, Tomasz Pieńko, Bat-Hen Zalman, Joanna Trylska, Timor Baasov
Exploring eukaryotic versus prokaryotic ribosomal RNA recognition with aminoglycoside derivatives. MedChemComm 9 (3) (2018)
Katarzyna Kulczycka-Mierzejewska, Joanna Sadlej, Joanna Trylska
Molecular dynamics simulations suggest why the A2058G mutation in 23S RNA results in bacterial resistance against clindamycin. Journal of molecular modeling 24 (8) (2018)
Monika Wojciechowska, Marta Dudek, Joanna Trylska
Thermodynamics of the pseudo-knot in helix 18 of 16S ribosomal RNA. Biopolymers 109 (4) (2018)
Boris Smolkin, Alina Khononov, Tomasz Pieńko, Michal Shavit, Valery Belakhov, Joanna Trylska, Timor Baasov
Towards Catalytic Antibiotics: Redesign of Aminoglycosides To Catalytically Disable Bacterial Ribosomes. Chembiochem : a European journal of chemical biology 20 (2) (2018)
Maciej Jasiński, Marta Kulik, Monika Wojciechowska, Ryszard Stolarski, Joanna Trylska
Interactions of 2'-O-methyl oligoribonucleotides with the RNA models of the 30S subunit A-site. PloS one 13 (1) (2018)
Tomasz Pieńko, Aleksandra J Wierzba, Monika Wojciechowska, Dorota Gryko, Joanna Trylska
Conformational Dynamics of Cyanocobalamin and Its Conjugates with Peptide Nucleic Acids. The journal of physical chemistry. B 121 (14) (2017)
Marcin Równicki, Monika Wojciechowska, Aleksandra J Wierzba, Jakub Czarnecki, Dariusz Bartosik, Dorota Gryko, Joanna Trylska
Vitamin B12 as a carrier of peptide nucleic acid (PNA) into bacterial cells. Scientific reports 7 (1) (2017)
Marta Dudek, Joanna Trylska
Molecular Dynamics Simulations of l-RNA Involving Homo- and Heterochiral Complexes. Journal of chemical theory and computation 13 (3) (2017)