João Paulo Gomes

Scopus Author ID Loop profile Ciência ID ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 41

Top Venues

Microorganisms

International journal of molecular sciences

Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology]

Microbiology spectrum

National Institute of Health

Children's Hospital Oakland Research Institute (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

National Institute of Health

Portugal

Habilitation Degree

National Institute of Health

Portugal

Head of the Bioinformatics Unit :: Infectious Diseases

National Institute of Health

Portugal

Head of the Research Unit :: Infectious Diseases

Education History

Children's Hospital Oakland Research Institute

United States

PHD

Publications

Inês C Rodrigues, Marisa Ribeiro-Almeida, Leonor Silveira, Joana C Prata, André Pinto de Carvalho, Carla Roque, João Paulo Gomes, Vítor Borges, Angela Pista, Paulo Martins da Costa
Unveiling a Listeria monocytogenes Outbreak in a Rabbit Farm: Clinical Manifestation, Antimicrobial Resistance, Genomic Insights and Environmental Investigation. Microorganisms 12 (4) (2024)
Rita Mendonça, Rosália Furtado, Anabela Coelho, Cristina Belo Correia, Elena Suyarko, Vítor Borges, João Paulo Gomes, Angela Pista, Rita Batista
Raw milk cheeses from Beira Baixa, Portugal-A contributive study for the microbiological hygiene and safety assessment. Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] 55 (2) (2024)
Adriana Silva, Vanessa Silva, João Paulo Gomes, Anabela Coelho, Rita Batista, Cristina Saraiva, Alexandra Esteves, Ângela Martins, Diogo Contente, Lara Diaz-Formoso, Luis M Cintas, Gilberto Igrejas, Vítor Borges, Patrícia Poeta
Listeria monocytogenes from Food Products and Food Associated Environments: Antimicrobial Resistance, Genetic Clustering and Biofilm Insights. Antibiotics (Basel, Switzerland) 13 (5) (2024)
Rita Mendonça, Rosália Furtado, Anabela Coelho, Cristina Belo Correia, Elena Suyarko, Vítor Borges, João Paulo Gomes, Angela Pista, Rita Batista
Raw milk cheeses from Beira Baixa, Portugal-A contributive study for the microbiological hygiene and safety assessment. Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] 55 (2) (2024)
Inês C Rodrigues, Marisa Ribeiro-Almeida, Leonor Silveira, Joana C Prata, André Pinto de Carvalho, Carla Roque, João Paulo Gomes, Vítor Borges, Angela Pista, Paulo Martins da Costa
Unveiling a Listeria monocytogenes Outbreak in a Rabbit Farm: Clinical Manifestation, Antimicrobial Resistance, Genomic Insights and Environmental Investigation. Microorganisms 12 (4) (2024)
Adriana Silva, Vanessa Silva, João Paulo Gomes, Anabela Coelho, Rita Batista, Cristina Saraiva, Alexandra Esteves, Ângela Martins, Diogo Contente, Lara Diaz-Formoso, Luis M Cintas, Gilberto Igrejas, Vítor Borges, Patrícia Poeta
Listeria monocytogenes from Food Products and Food Associated Environments: Antimicrobial Resistance, Genetic Clustering and Biofilm Insights. Antibiotics (Basel, Switzerland) 13 (5) (2024)
Rita Mendonça, Rosália Furtado, Anabela Coelho, Cristina Belo Correia, Elena Suyarko, Vítor Borges, João Paulo Gomes, Angela Pista, Rita Batista
Raw milk cheeses from Beira Baixa, Portugal-A contributive study for the microbiological hygiene and safety assessment. Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] (2024)
Rita Mendonça, Rosália Furtado, Anabela Coelho, Cristina Belo Correia, Elena Suyarko, Vítor Borges, João Paulo Gomes, Angela Pista, Rita Batista
Raw milk cheeses from Beira Baixa, Portugal-A contributive study for the microbiological hygiene and safety assessment. Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] 55 (2) (2024)
Vítor Borges, Mariana Perez Duque, João Vieira Martins, Paula Vasconcelos, Rita Ferreira, Daniel Sobral, Ana Pelerito, Isabel Lopes de Carvalho, Maria Sofia Núncio, Maria José Borrego, Cornelius Römer, Richard A Neher, Megan O'Driscoll, Raquel Rocha, Sílvia Lopo, Raquel Neves, Paula Palminha, Luís Coelho, Alexandra Nunes, Joana Isidro, Miguel Pinto, João Dourado Santos, Verónica Mixão, Daniela Santos, Silvia Duarte, Luís Vieira, Fátima Martins, Jorge Machado, Vítor Cabral Veríssimo, Berta Grau-Pujol, André Peralta-Santos, José Neves, Margarida Caldeira, Mafalda Pestana, Cândida Fernandes, João Caria, Raquel Pinto, Diana Póvoas, Fernando Maltez, Ana Isabel Sá, Mafalda Brito Salvador, Eugénio Teófilo, Miguel Rocha, Virginia Moneti, Luis Miguel Duque, Francisco Ferreira E Silva, Teresa Baptista, Joana Vasconcelos, Sara Casanova, Kamal Mansinho, João Vaz Alves, João Alves, António Silva, Miguel Alpalhão, Cláudia Brazão, Diogo Sousa, Paulo Filipe, Patrícia Pacheco, Francesca Peruzzu, Rita Patrocínio de Jesus, Luís Ferreira, Josefina Mendez, Sofia Jordão, Frederico Duarte, Maria João Gonçalves, Eduarda Pena, Claúdio Nunes Silva, André Rodrigues Guimarães, Margarida Tavares, Graça Freitas, Rita Cordeiro, João Paulo Gomes
Viral genetic clustering and transmission dynamics of the 2022 mpox outbreak in Portugal. Nature medicine (2023)
Joana Praça, Rosália Furtado, Anabela Coelho, Cristina Belo Correia, Vítor Borges, João Paulo Gomes, Angela Pista, Rita Batista
Listeria monocytogenes , Escherichia coli and Coagulase Positive Staphylococci in Cured Raw Milk Cheese from Alentejo Region, Portugal. Microorganisms 11 (2) (2023)
Diogo Ramos, Miguel Pinto, Rodrigo Sousa Coutinho, Carolina Silva, Miriam Quina, João Paulo Gomes, Elizabeth Pádua
Looking at the Molecular Target of NS5A Inhibitors throughout a Population Highly Affected with Hepatitis C Virus. Pathogens (Basel, Switzerland) 12 (6) (2023)
João Henriques, Verónica Mixão, Joana Cabrita, Tiago Isidoro Duarte, Tânia Sequeira, Sofia Cardoso, Nuno Germano, Liliana Dias, Luis Bento, Sílvia Duarte, Cristina Veríssimo, João Paulo Gomes, Raquel Sabino
Candida auris in Intensive Care Setting: The First Case Reported in Portugal. Journal of fungi (Basel, Switzerland) 9 (8) (2023)
Rita Macedo, Joana Isidro, Rita Ferreira, Miguel Pinto, Vítor Borges, Sílvia Duarte, Luís Vieira, João Paulo Gomes
Molecular Capture of Mycobacterium tuberculosis Genomes Directly from Clinical Samples: A Potential Backup Approach for Epidemiological and Drug Susceptibility Inferences. International journal of molecular sciences 24 (3) (2023)
Célia Bettencourt, Alexandra Nunes, Paulo Jorge Nogueira, Sílvia Duarte, Catarina Silva, João Paulo Gomes, Maria João Simões
Epidemiology and genetic diversity of invasive Neisseria meningitidis strains circulating in Portugal from 2003 to 2020. International microbiology : the official journal of the Spanish Society for Microbiology (2023)
Sofia Carneiro, Miguel Pinto, Sónia Silva, Andrea Santos, Irene Rodrigues, Daniela Santos, Sílvia Duarte, Luís Vieira, João Paulo Gomes, Rita Macedo
Genome-Scale Characterization of Mycobacterium abscessus Complex Isolates from Portugal. International journal of molecular sciences 24 (20) (2023)
Alexandra Nunes, Mónica Oleastro, Frederico Alves, Nadia Liassine, David M Lowe, Lucie Benejat, Astrid Ducounau, Quentin Jehanne, Vítor Borges, João Paulo Gomes, Gauri Godbole, Philippe Lehours
Erratum for Nunes et al., "Recurrent Campylobacter jejuni Infections with In Vivo Selection of Resistance to Macrolides and Carbapenems: Molecular Characterization of Resistance Determinants". Microbiology spectrum (2023)
Rita Macedo, Joana Isidro, Rita Ferreira, Miguel Pinto, Vítor Borges, Sílvia Duarte, Luís Vieira, João Paulo Gomes
Molecular Capture of Mycobacterium tuberculosis Genomes Directly from Clinical Samples: A Potential Backup Approach for Epidemiological and Drug Susceptibility Inferences. International journal of molecular sciences 24 (3) (2023)
Áine Niamh O'Toole, Richard A Neher, Nnaemeka Ndodo, Vítor Borges, Ben Gannon, João Paulo Gomes, Natalie Groves, David J King, Daniel Maloney, Philippe Lemey, Kuiama Lewandowski, Nicholas James Loman, Richard Myers, Ifeanyi F Omah, Marc A Suchard, Michael Worobey, Meera Chand, Chikwe Ihekweazu, David Ulaeto, Ifedayo M O Adetifa, Andrew Rambaut
APOBEC3 deaminase editing in mpox virus as evidence for sustained human transmission since at least 2016. Science (New York, N.Y.) 382 (6670) (2023)
Joana Praça, Rosália Furtado, Anabela Coelho, Cristina Belo Correia, Vítor Borges, João Paulo Gomes, Angela Pista, Rita Batista
Listeria monocytogenes , Escherichia coli and Coagulase Positive Staphylococci in Cured Raw Milk Cheese from Alentejo Region, Portugal. Microorganisms 11 (2) (2023)
Rita Macedo, Joana Isidro, Rita Ferreira, Miguel Pinto, Vítor Borges, Sílvia Duarte, Luís Vieira, João Paulo Gomes
Molecular Capture of Mycobacterium tuberculosis Genomes Directly from Clinical Samples: A Potential Backup Approach for Epidemiological and Drug Susceptibility Inferences. International journal of molecular sciences 24 (3) (2023)
Alexandra Nunes, Mónica Oleastro, Frederico Alves, Nadia Liassine, David M Lowe, Lucie Benejat, Astrid Ducounau, Quentin Jehanne, Vítor Borges, João Paulo Gomes, Gauri Godbole, Lehours Philippe
Recurrent Campylobacter jejuni Infections with In Vivo Selection of Resistance to Macrolides and Carbapenems: Molecular Characterization of Resistance Determinants. Microbiology spectrum (2023)
Diogo Ramos, Miguel Pinto, Rodrigo Sousa Coutinho, Carolina Silva, Miriam Quina, João Paulo Gomes, Elizabeth Pádua
Looking at the Molecular Target of NS5A Inhibitors throughout a Population Highly Affected with Hepatitis C Virus. Pathogens (Basel, Switzerland) 12 (6) (2023)
Ana Balau, Daniel Sobral, Patrícia Abrantes, Inês Santos, Verónica Mixão, João Paulo Gomes, Sandra Antunes, Ana Paula Arez
Differential Gene Expression of Malaria Parasite in Response to Red Blood Cell-Specific Glycolytic Intermediate 2,3-Diphosphoglycerate (2,3-DPG). International journal of molecular sciences 24 (23) (2023)
Joana Praça, Rosália Furtado, Anabela Coelho, Cristina Belo Correia, Vítor Borges, João Paulo Gomes, Angela Pista, Rita Batista
Listeria monocytogenes , Escherichia coli and Coagulase Positive Staphylococci in Cured Raw Milk Cheese from Alentejo Region, Portugal. Microorganisms 11 (2) (2023)
Joana Praça, Rosália Furtado, Anabela Coelho, Cristina Belo Correia, Vítor Borges, João Paulo Gomes, Angela Pista, Rita Batista
Listeria monocytogenes , Escherichia coli and Coagulase Positive Staphylococci in Cured Raw Milk Cheese from Alentejo Region, Portugal. Microorganisms 11 (2) (2023)
Daniela Cochicho, Alexandra Nunes, João Paulo Gomes, Luís Martins, Mário Cunha, Beatriz Medeiros-Fonseca, Paula Alexandra Oliveira, Margarida M S M Bastos, Rui Medeiros, Joana Mendonça, Luis Vieira, Rui Miguel Gil da Costa, Ana Felix
Characterization of the Human Papillomavirus 16 Oncogenes in K14HPV16 Mice: Sublineage A1 Drives Multi-Organ Carcinogenesis. International journal of molecular sciences 23 (20) (2022)
Joana Isidro, Vítor Borges, Miguel Pinto, Daniel Sobral, João Dourado Santos, Alexandra Nunes, Verónica Mixão, Rita Ferreira, Daniela Santos, Silvia Duarte, Luís Vieira, Maria José Borrego, Sofia Núncio, Isabel Lopes de Carvalho, Ana Pelerito, Rita Cordeiro, João Paulo Gomes
Addendum: Phylogenomic characterization and signs of microevolution in the 2022 multi-country outbreak of monkeypox virus. Nature medicine 28 (10) (2022)
Joana Isidro, Vítor Borges, Miguel Pinto, Daniel Sobral, João Dourado Santos, Alexandra Nunes, Verónica Mixão, Rita Ferreira, Daniela Santos, Silvia Duarte, Luís Vieira, Maria José Borrego, Sofia Núncio, Isabel Lopes de Carvalho, Ana Pelerito, Rita Cordeiro, João Paulo Gomes
Phylogenomic characterization and signs of microevolution in the 2022 multi-country outbreak of monkeypox virus. Nature medicine 28 (8) (2022)
Luís Tanoeiro, Mónica Oleastro, Alexandra Nunes, Andreia T Marques, Sílvia Vaz Duarte, João Paulo Gomes, António Pedro Alves Matos, Jorge M B Vítor, Filipa F Vale
Cryptic Prophages Contribution for Campylobacter jejuni and Campylobacter coli Introgression. Microorganisms 10 (3) (2022)
Matúš Štefánek, Sigurd Wenner, Vítor Borges, Miguel Pinto, João Paulo Gomes, João Carlos Rodrigues, Isabel Faria, Maria Ana Pessanha, Filomena Martins, Raquel Sabino, Cristina Veríssimo, Isabel D Nogueira, Patrícia Almeida Carvalho, Helena Bujdáková, Luisa Jordao
Antimicrobial Resistance and Biofilms Underlying Catheter-Related Bloodstream Coinfection by Enterobacter cloacae Complex and Candida parapsilosis . Antibiotics (Basel, Switzerland) 11 (9) (2022)
Maria João Gargaté, Anabela Vilares, Idalina Ferreira, Tânia Reis, Susana Martins, Joana Mendonça, Vítor Borges, João Paulo Gomes
Parallel Propagation of Toxoplasma gondii In Vivo, In Vitro and in Alternate Model: Towards Less Dependence on the Mice Model. Pathogens (Basel, Switzerland) 11 (9) (2022)
Nicholas F G Chen, Chrispin Chaguza, Luc Gagne, Matthew Doucette, Sandra Smole, Erika Buzby, Joshua Hall, Stephanie Ash, Rachel Harrington, Seana Cofsky, Selina Clancy, Curtis J Kapsak, Joel Sevinsky, Kevin Libuit, Daniel J Park, Peera Hemarajata, Jacob M Garrigues, Nicole M Green, Sean Sierra-Patev, Kristin Carpenter-Azevedo, Richard C Huard, Claire Pearson, Kutluhan Incekara, Christina Nishimura, Jian Ping Huang, Emily Gagnon, Ethan Reever, Jafar Razeq, Anthony Muyombwe, Vítor Borges, Rita Ferreira, Daniel Sobral, Silvia Duarte, Daniela Santos, Luís Vieira, João Paulo Gomes, Carly Aquino, Isabella M Savino, Karinda Felton, Moneeb Bajwa, Nyjil Hayward, Holly Miller, Allison Naumann, Ria Allman, Neel Greer, Amary Fall, Heba H Mostafa, Martin P McHugh, Daniel M Maloney, Rebecca Dewar, Juliet Kenicer, Abby Parker, Katharine Mathers, Jonathan Wild, Seb Cotton, Kate E Templeton, George Churchwell, Philip A Lee, Maria Pedrosa, Brenna McGruder, Sarah Schmedes, Matthew R Plumb, Xiong Wang, Regina Bones Barcellos, Fernanda M S Godinho, Richard Steiner Salvato, Aimee Ceniseros, Mallery I Breban, Nathan D Grubaugh, Glen R Gallagher, Chantal B F Vogels
Multi-site validation of an amplicon-based sequencing approach for human monkeypox virus. medRxiv : the preprint server for health sciences (2022)
Vítor Borges, Joana Isidro, Nídia Sequeira Trovão, Sílvia Duarte, Helena Cortes Martins, Hugo F M C M Martiniano, Isabel Gordo, Ricardo B Leite, Luís Vieira, null null, Raquel Guiomar, João Paulo Gomes
SARS-CoV-2 introductions and early dynamics of the epidemic in Portugal. Communications medicine 2 (2022)
Francisco Olivença, Alexandra Nunes, Rita Macedo, David Pires, Cátia Silveiro, Elsa Anes, Maria Miragaia, João Paulo Gomes, Maria João Catalão
Uncovering Beta-Lactam Susceptibility Patterns in Clinical Isolates of Mycobacterium tuberculosis through Whole-Genome Sequencing. Microbiology spectrum 10 (4) (2022)
Angela Pista, Leonor Silveira, Sofia Ribeiro, Mariana Fontes, Rita Castro, Anabela Coelho, Rosália Furtado, Teresa Lopes, Carla Maia, Verónica Mixão, Vítor Borges, Ana Sá, Vanessa Soeiro, Cristina Belo Correia, João Paulo Gomes, Margarida Saraiva, Mónica Oleastro, Rita Batista
Pathogenic Escherichia coli , Salmonella spp. and Campylobacter spp. in Two Natural Conservation Centers of Wildlife in Portugal: Genotypic and Phenotypic Characterization. Microorganisms 10 (11) (2022)
Massimo Amicone, Vítor Borges, Maria João Alves, Joana Isidro, Líbia Zé-Zé, Sílvia Duarte, Luís Vieira, Raquel Guiomar, João Paulo Gomes, Isabel Gordo
Mutation rate of SARS-CoV-2 and emergence of mutators during experimental evolution. Evolution, medicine, and public health 10 (1) (2022)
Célia Bettencourt, Alexandra Nunes, João Paulo Gomes, Maria João Simões
Genomic surveillance of Neisseria meningitidis serogroup W in Portugal from 2003 to 2019. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology (2021)
Célia Bettencourt, Alexandra Nunes, Ana Maria Correia, João Paulo Gomes, Maria João Simões
Lung abscess due to Neisseria meningitidis serogroup X-unexpected virulence of a commensal resulting from putative serogroup B capsular switching. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 39 (12) (2020)
Vítor Borges, Joana Isidro, Helena Cortes-Martins, Sílvia Duarte, Luís Vieira, Ricardo B Leite, Isabel Gordo, Constantino P Caetano, Baltazar Nunes, Regina Sá, Ana Oliveira, Raquel Guiomar, null null, João Paulo Gomes
Massive dissemination of a SARS-CoV-2 Spike Y839 variant in Portugal. Emerging microbes & infections 9 (1) (2020)
Sara V Pais, Charlotte E Key, Vítor Borges, Inês Serrano Pereira, João Paulo Gomes, Derek J Fisher, Luís Jaime Mota
CteG is a Chlamydia trachomatis effector protein that associates with the Golgi complex of infected host cells. Scientific reports 9 (1) (2019)
Leonor Silveira, Miguel Pinto, Joana Isidro, Angela Pista, Patrícia Themudo, Luís Vieira, Jorge Machado, João Paulo Gomes
Multidrug-Resistant Salmonella enterica Serovar Rissen Clusters Detected in Azores Archipelago, Portugal. International journal of genomics 2019 (2019)

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Publication Activity (10 Years)

Top Topics

Top Venues

João Paulo Gomes