Johannes Stegmaier

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 20

Top Venues

PLoS computational biology

PloS one

eLife

Radiology

RWTH Aachen University

University of Freiburg (MSC)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

RWTH Aachen University Apr 01 2018

Germany

Junior Professor :: Institute of Imaging and Computer Vision

Karlsruhe Institute of Technology Feb 01 2015 - Dec 31 2017

Germany

Postdoc :: Institute for Applied Computer Science

California Institute of Technology Oct 24 2016 - Jan 20 2017

United States

Short Term Scholar :: Center for Advanced Methods in Biological Image Analysis

Karlsruhe Institute of Technology Feb 01 2012 - Jan 31 2015

Germany

PhD Student :: Institute for Applied Computer Science

Howard Hughes Medical Institute Janelia Farm Research Campus Jan 15 2014 - May 17 2014

United States

Short Term Scholar

Education History

University of Freiburg Oct 01 2009 - Dec 31 2011

Germany

MSC

Eberhard Karls Universität Tübingen Oct 01 2006 - Oct 01 2009

Germany

BSC

Publications

Abin Jose, Rijo Roy, Daniel Moreno-Andres, Johannes Stegmaier
Automatic detection of cell-cycle stages using recurrent neural networks. PloS one 19 (3) (2024)
Dennis Eschweiler, Rüveyda Yilmaz, Matisse Baumann, Ina Laube, Rijo Roy, Abin Jose, Daniel Brückner, Johannes Stegmaier
Denoising diffusion probabilistic models for generation of realistic fully-annotated microscopy image datasets. PLoS computational biology 20 (2) (2024)
Dennis Eschweiler, Rüveyda Yilmaz, Matisse Baumann, Ina Laube, Rijo Roy, Abin Jose, Daniel Brückner, Johannes Stegmaier
Denoising diffusion probabilistic models for generation of realistic fully-annotated microscopy image datasets. PLoS computational biology 20 (2) (2024)
Dennis Eschweiler, Rüveyda Yilmaz, Matisse Baumann, Ina Laube, Rijo Roy, Abin Jose, Daniel Brückner, Johannes Stegmaier
Denoising diffusion probabilistic models for generation of realistic fully-annotated microscopy image datasets. PLoS computational biology 20 (2) (2024)
Abin Jose, Rijo Roy, Daniel Moreno-Andres, Johannes Stegmaier
Automatic detection of cell-cycle stages using recurrent neural networks. PloS one 19 (3) (2024)
Dennis Eschweiler, Rüveyda Yilmaz, Matisse Baumann, Ina Laube, Rijo Roy, Abin Jose, Daniel Brückner, Johannes Stegmaier
Denoising diffusion probabilistic models for generation of realistic fully-annotated microscopy image datasets. PLoS computational biology 20 (2) (2024)
Dennis Eschweiler, Rüveyda Yilmaz, Matisse Baumann, Ina Laube, Rijo Roy, Abin Jose, Daniel Brückner, Johannes Stegmaier
Denoising diffusion probabilistic models for generation of realistic fully-annotated microscopy image datasets. PLoS computational biology 20 (2) (2024)
Firas Khader, Gustav Müller-Franzes, Tianci Wang, Tianyu Han, Soroosh Tayebi Arasteh, Christoph Haarburger, Johannes Stegmaier, Keno Kyrill Bressem, Christiane K Kuhl, Sven Nebelung, Jakob Nikolas Kather, Daniel Truhn
Multimodal Deep Learning for Integrating Chest Radiographs and Clinical Parameters: A Case for Transformers. Radiology 309 (1) (2023)
Soeren Strauss, Adam Runions, Brendan Lane, Dennis Eschweiler, Namrata Bajpai, Nicola Trozzi, Anne-Lise Routier-Kierzkowska, Saiko Yoshida, Sylvia Rodrigues da Silveira, Athul Vijayan, Rachele Tofanelli, Mateusz Majda, Emillie Echevin, Constance Le Gloanec, Hana Bertrand-Rakusova, Milad Adibi, Kay Schneitz, George W Bassel, Daniel Kierzkowski, Johannes Stegmaier, Miltos Tsiantis, Richard S Smith
Using positional information to provide context for biological image analysis with MorphoGraphX 2.0. eLife 11 (2022)
Firas Khader, Tianyu Han, Gustav Müller-Franzes, Luisa Charlotte Huck, Philipp Schad, Sebastian Keil, Emona S Barzakova, Maximilian Franz Schulze-Hagen, Federico Pedersoli, Volkmar Schulz, Markus Zimmermann, Lina Nebelung, Jakob Nikolas Kather, Karim Hamesch, Christoph Haarburger, Gernot Marx, Johannes Stegmaier, Christiane K Kuhl, Philipp Bruners, Sven Nebelung, Daniel Truhn
Artificial Intelligence for Clinical Interpretation of Bedside Chest Radiographs. Radiology (2022)
Daniel Moreno-Andres, Anuk Bhattacharyya, Anja Scheufen, Johannes Stegmaier
LiveCellMiner: A new tool to analyze mitotic progression. PloS one 17 (7) (2022)
Reinhard Windoffer, Nicole Schwarz, Sungjun Yoon, Teodora Piskova, Michael Scholkemper, Johannes Stegmaier, Andrea Bönsch, Jacopo Di Russo, Rudolf E. Leube
Quantitative mapping of keratin networks in 3D. eLife 11 (2022)
Sourabh Bhide, Denisa Gombalova, Gregor Mönke, Johannes Stegmaier, Valentyna Zinchenko, Anna Kreshuk, Julio Monti Belmonte, Maria Leptin
Mechanical competition alters the cellular interpretation of an endogenous genetic program. The Journal of cell biology 220 (11) (2021)
Dennis Eschweiler, Malte Rethwisch, Mareike Jarchow, Simon Koppers, Johannes Stegmaier
3D fluorescence microscopy data synthesis for segmentation and benchmarking. PloS one 16 (12) (2021)
Meltem Weger, Benjamin Dieter Weger, Andrea Schink, Masanari Takamiya, Johannes Stegmaier, Cédric Gobet, Alice Parisi, Andrei Yu Kobitski, Jonas Mertes, Nils Krone, Uwe Strähle, Gerd Ulrich Nienhaus, Ralf Mikut, Frederic Gachon, Philipp Gut, Thomas Dickmeis
MondoA regulates gene expression in cholesterol biosynthesis-associated pathways required for zebrafish epiboly. eLife 9 (2020)
Masanari Takamiya, Johannes Stegmaier, Andrei Yu Kobitski, Benjamin Schott, Benjamin D Weger, Dimitra Margariti, Angel Rafael Cereceda Delgado, Victor Gourain, Tim Scherr, Lixin Yang, Sebastian Sorge, Jens C Otte, Volker Hartmann, Jos van Wezel, Rainer Stotzka, Thomas Reinhard, Günther Schlunck, Thomas Dickmeis, Sepand Rastegar, Ralf Mikut, Gerd Ulrich Nienhaus, Uwe Strähle
Pax6 organizes the anterior eye segment by guiding two distinct neural crest waves. PLoS genetics 16 (6) (2020)
Harry M T Choi, Maayan Schwarzkopf, Mark E Fornace, Aneesh Acharya, Georgios Artavanis, Johannes Stegmaier, Alexandre Cunha, Niles A Pierce
Third-generation in situ hybridization chain reaction: multiplexed, quantitative, sensitive, versatile, robust. Development (Cambridge, England) 145 (12) (2018)
Benjamin Schott, Manuel Traub, Cornelia Schlagenhauf, Masanari Takamiya, Thomas Antritter, Andreas Bartschat, Katharina Löffler, Denis Blessing, Jens C Otte, Andrei Yu Kobitski, G Ulrich Nienhaus, Uwe Strähle, Ralf Mikut, Johannes Stegmaier
EmbryoMiner: A new framework for interactive knowledge discovery in large-scale cell tracking data of developing embryos. PLoS computational biology 14 (4) (2018)
Benjamin Mattes, Yonglong Dang, Gediminas Greicius, Lilian Tamara Kaufmann, Benedikt Prunsche, Jakob Rosenbauer, Johannes Stegmaier, Ralf Mikut, Suat Özbek, Gerd Ulrich Nienhaus, Alexander Schug, David M Virshup, Steffen Scholpp
Wnt/PCP controls spreading of Wnt/β-catenin signals by cytonemes in vertebrates. eLife 7 (2018)
Johannes Stegmaier, Ralf Mikut
Fuzzy-based propagation of prior knowledge to improve large-scale image analysis pipelines. PloS one 12 (11) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Johannes Stegmaier