Joseph F Ryan (Joseph Ryan)

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 35

Top Venues

Genome biology and evolution

Nature communications

Proteomics

Molecular biology and evolution

University of Florida Whitney Laboratory for Marine Bioscience

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Florida Whitney Laboratory for Marine Bioscience Feb 01 2014

United States

Assistant Professor :: Biology

Publications

R Travis Moreland, Suiyuan Zhang, Sofia N Barreira, Joseph F Ryan, Andreas D Baxevanis
An AI-generated proteome-scale dataset of predicted protein structures for the ctenophore Mnemiopsis leidyi. Proteomics 24 (15) (2024)
Alexandra M Vargas, Melissa B DeBiasse, Lana L Dykes, Allison Edgar, T Danielle Hayes, Daniel J Groso, Leslie S Babonis, Mark Q Martindale, Joseph F Ryan
Morphological and dietary changes encoded in the genome of Beroe ovata , a ctenophore-eating ctenophore. NAR genomics and bioinformatics 6 (2) (2024)
R Travis Moreland, Suiyuan Zhang, Sofia N Barreira, Joseph F Ryan, Andreas D Baxevanis
An AI-generated proteome-scale dataset of predicted protein structures for the ctenophore Mnemiopsis leidyi. Proteomics 24 (15) (2024)
Alexandra M Vargas, Melissa B DeBiasse, Lana L Dykes, Allison Edgar, T Danielle Hayes, Daniel J Groso, Leslie S Babonis, Mark Q Martindale, Joseph F Ryan
Morphological and dietary changes encoded in the genome of Beroe ovata , a ctenophore-eating ctenophore. NAR genomics and bioinformatics 6 (2) (2024)
Dorothy G Mitchell, Allison Edgar, Júlia Ramon Mateu, Joseph F Ryan, Mark Q Martindale
The ctenophore Mnemiopsis leidyi deploys a rapid injury response dating back to the last common animal ancestor. Communications biology 7 (1) (2024)
R Travis Moreland, Suiyuan Zhang, Sofia N Barreira, Joseph F Ryan, Andreas D Baxevanis
An AI-generated proteome-scale dataset of predicted protein structures for the ctenophore Mnemiopsis leidyi. Proteomics (2024)
Dorothy G Mitchell, Allison Edgar, Júlia Ramon Mateu, Joseph F Ryan, Mark Q Martindale
The ctenophore Mnemiopsis leidyi deploys a rapid injury response dating back to the last common animal ancestor. Communications biology 7 (1) (2024)
Dorothy G Mitchell, Allison Edgar, Júlia Ramon Mateu, Joseph F Ryan, Mark Q Martindale
The ctenophore Mnemiopsis leidyi deploys a rapid injury response dating back to the last common animal ancestor. Communications biology 7 (1) (2024)
R Travis Moreland, Suiyuan Zhang, Sofia N Barreira, Joseph F Ryan, Andreas D Baxevanis
An AI-generated proteome-scale dataset of predicted protein structures for the ctenophore Mnemiopsis leidyi. Proteomics 24 (15) (2024)
C J Pickett, Joseph F Ryan, Bradley Davidson
Acquisition of polymorphism in the chordate doliolids. Integrative and comparative biology (2024)
Leslie S Babonis, Camille Enjolras, Abigail J Reft, Brent M Foster, Fredrik Hugosson, Joseph F Ryan, Marymegan Daly, Mark Q Martindale
Single-cell atavism reveals an ancient mechanism of cell type diversification in a sea anemone. Nature communications 14 (1) (2023)
Bailey M Steinworth, Mark Q Martindale, Joseph F Ryan
Gene Loss may have Shaped the Cnidarian and Bilaterian Hox and ParaHox Complement. Genome biology and evolution 15 (1) (2023)
Adolfo Lara, Benjamin T Simonson, Joseph F Ryan, Timothy Jegla
Genome Scale Analysis Reveals Extensive Diversification of Voltage-Gated K+ Channels in Stem Cnidarians. Genome biology and evolution (2023)
Adolfo Lara, Benjamin T Simonson, Joseph F Ryan, Timothy Jegla
Genome-Scale Analysis Reveals Extensive Diversification of Voltage-Gated K+ Channels in Stem Cnidarians. Genome biology and evolution 15 (3) (2023)
Leslie S Babonis, Camille Enjolras, Abigail J Reft, Brent M Foster, Fredrik Hugosson, Joseph F Ryan, Marymegan Daly, Mark Q Martindale
Single-cell atavism reveals an ancient mechanism of cell type diversification in a sea anemone. Nature communications 14 (1) (2023)
Adolfo Lara, Benjamin T Simonson, Joseph F Ryan, Timothy Jegla
Genome-Scale Analysis Reveals Extensive Diversification of Voltage-Gated K+ Channels in Stem Cnidarians. Genome biology and evolution 15 (3) (2023)
Leslie S Babonis, Camille Enjolras, Abigail J Reft, Brent M Foster, Fredrik Hugosson, Joseph F Ryan, Marymegan Daly, Mark Q Martindale
Single-cell atavism reveals an ancient mechanism of cell type diversification in a sea anemone. Nature communications 14 (1) (2023)
Leslie S Babonis, Camille Enjolras, Abigail J Reft, Brent M Foster, Fredrik Hugosson, Joseph F Ryan, Marymegan Daly, Mark Q Martindale
Single-cell atavism reveals an ancient mechanism of cell type diversification in a sea anemone. Nature communications 14 (1) (2023)
Labib Rouhana, Allison Edgar, Fredrik Hugosson, Valeria Dountcheva, Mark Q Martindale, Joseph F Ryan
Cytoplasmic polyadenylation is an ancestral hallmark of early development in animals. Molecular biology and evolution (2023)
Leslie S Babonis, Camille Enjolras, Abigail J Reft, Brent M Foster, Fredrik Hugosson, Joseph F Ryan, Marymegan Daly, Mark Q Martindale
Single-cell atavism reveals an ancient mechanism of cell type diversification in a sea anemone. Nature communications 14 (1) (2023)
Jennifer Ortiz, Yuriy V Bobkov, Melissa B DeBiasse, Dorothy G Mitchell, Allison Edgar, Mark Q Martindale, Anthony G Moss, Leslie S Babonis, Joseph F Ryan
Independent Innexin Radiation Shaped Signaling in Ctenophores. Molecular biology and evolution 40 (2) (2023)
Leslie S Babonis, Camille Enjolras, Abigail J Reft, Brent M Foster, Fredrik Hugosson, Joseph F Ryan, Marymegan Daly, Mark Q Martindale
Single-cell atavism reveals an ancient mechanism of cell type diversification in a sea anemone. Nature communications 14 (1) (2023)
Bailey M Steinworth, Mark Q Martindale, Joseph F Ryan
Gene Loss may have Shaped the Cnidarian and Bilaterian Hox and ParaHox Complement. Genome biology and evolution 15 (1) (2023)
Adolfo Lara, Benjamin T Simonson, Joseph F Ryan, Timothy Jegla
Genome-Scale Analysis Reveals Extensive Diversification of Voltage-Gated K+ Channels in Stem Cnidarians. Genome biology and evolution 15 (3) (2023)
Jennifer Ortiz, Yuriy V Bobkov, Melissa B DeBiasse, Dorothy G Mitchell, Allison Edgar, Mark Q Martindale, Anthony G Moss, Leslie S Babonis, Joseph F Ryan
Independent Innexin Radiation Shaped Signaling in Ctenophores. Molecular biology and evolution 40 (2) (2023)
Bailey M Steinworth, Mark Q Martindale, Joseph F Ryan
Gene Loss may have Shaped the Cnidarian and Bilaterian Hox and ParaHox Complement. Genome biology and evolution 15 (1) (2023)
Jennifer Ortiz, Yuriy V Bobkov, Melissa B DeBiasse, Dorothy G Mitchell, Allison Edgar, Mark Q Martindale, Anthony G Moss, Leslie S Babonis, Joseph F Ryan
Independent innexin radiation shaped signaling in ctenophores. Molecular biology and evolution (2023)
Bailey M Steinworth, Mark Q Martindale, Joseph F Ryan
Gene Loss may have Shaped the Cnidarian and Bilaterian Hox and ParaHox Complement. Genome biology and evolution 15 (1) (2023)
Leslie S Babonis, Camille Enjolras, Abigail J Reft, Brent M Foster, Fredrik Hugosson, Joseph F Ryan, Marymegan Daly, Mark Q Martindale
Single-cell atavism reveals an ancient mechanism of cell type diversification in a sea anemone. Nature communications 14 (1) (2023)
Remi N Ketchum, Phillip L Davidson, Edward G Smith, Gregory A Wray, John A Burt, Joseph F Ryan, Adam M Reitzel
A Chromosome-level Genome Assembly of the Highly Heterozygous Sea Urchin Echinometra sp. EZ Reveals Adaptation in the Regulatory Regions of Stress Response Genes. Genome biology and evolution 14 (10) (2022)
Mylena D Santander, Maximiliano Manuel Maronna, Joseph F Ryan, Sonia Cristina da Silva Andrade
The state of Medusozoa genomics: current evidence and future challenges. GigaScience 11 (2022)
Leslie S Babonis, Camille Enjolras, Joseph F Ryan, Mark Q Martindale
A novel regulatory gene promotes novel cell fate by suppressing ancestral fate in the sea anemone Nematostella vectensis . Proceedings of the National Academy of Sciences of the United States of America 119 (19) (2022)
Bailey M Steinworth, Mark Q Martindale, Joseph F Ryan
Gene loss may have shaped the cnidarian and bilaterian Hox and ParaHox complement. Genome biology and evolution (2022)
Nathan James Kenny, Warren R Francis, Ramón E Rivera-Vicéns, Ksenia Juravel, Alex de Mendoza, Cristina Díez-Vives, Ryan Lister, Luis Alberto Bezares Calderón, Lauren Grombacher, Maša Roller, Lael D Barlow, Sara Camilli, Joseph F Ryan, Gert Wörheide, April L Hill, Ana Riesgo, Sally P Leys
Tracing animal genomic evolution with the chromosomal-level assembly of the freshwater sponge Ephydatia muelleri. Nature communications 11 (1) (2020)
José María Martín-Durán, Joseph F Ryan, Bruno Cossermelli Vellutini, Kevin Pang, Andreas Hejnol
Increased taxon sampling reveals thousands of hidden orthologs in flatworms. Genome research 27 (7) (2017)

Joseph F Ryan.css-eqlu8i{font-size:small;padding-left:4px;} (Joseph Ryan)

Publication Activity (10 Years)

Top Topics

Top Venues

Joseph F Ryan (Joseph Ryan)