GigaScience

Keyphrases

Publications

volume 12, number 1, 2023

volume 12, 2023

Jeremiah Miller, Aleksey V Zimin, Andrew Gordus
Chromosome-level genome and the identification of sex chromosomes in Uloborus diversus. GigaScience 12 (2023)
Jeremiah Miller, Aleksey V Zimin, Andrew Gordus
Chromosome-level genome and the identification of sex chromosomes in Uloborus diversus. GigaScience 12 (2023)
Ziyuan Dai, Haoning Wang, Haisheng Wu, Qing Zhang, Likai Ji, Xiaochun Wang, Quan Shen, Shixing Yang, Xiao Ma, Tongling Shan, Wen Zhang
Parvovirus dark matter in the cloaca of wild birds. GigaScience 12 (2023)
Malindrie Dharmaratne, Ameya S Kulkarni, Atefeh Taherian Fard, Jessica Cara Mar
scShapes: a statistical framework for identifying distribution shapes in single-cell RNA-sequencing data. GigaScience 12 (2023)
Qiqi Zhao, Zhenping Lin, Junpeng Chen, Zi Xie, Jun Wang, Keyu Feng, Wencheng Lin, Hongxin Li, Zezhong Hu, Weiguo Chen, Feng Chen, Muhammad Junaid, Huanmin Zhang, Qingmei Xie, Xinheng Zhang
Chromosome-level genome assembly of goose provides insight into the adaptation and growth of local goose breeds. GigaScience 12 (2023)
Kshitij Tandon, Francesco Ricci, Joana F Costa, Mónica Medina, Michael Kühl, Linda L Blackall, Heroen Verbruggen
Genomic view of the diversity and functional role of archaea and bacteria in the skeleton of the reef-building corals Porites lutea and Isopora palifera. GigaScience 12 (2023)
Jesse Farek, Daniel Hughes, William J Salerno, Yiming Zhu, Aishwarya Pisupati, Adam Mansfield, Olga Krasheninina, Adam C English, Ginger A Metcalf, Eric Boerwinkle, Donna M Muzny, Richard A Gibbs, Ziad M Khan, Fritz J Sedlazeck
xAtlas: scalable small variant calling across heterogeneous next-generation sequencing experiments. GigaScience 12 (2023)
Varuni Sarwal, Jaqueline Brito, Serghei Mangul, David Koslicki
TAMPA: interpretable analysis and visualization of metagenomics-based taxon abundance profiles. GigaScience 12 (2023)
Hirotaka Suetake, Tsukasa Fukusato, Takeo Igarashi, Tazro Ohta
Workflow sharing with automated metadata validation and test execution to improve the reusability of published workflows. GigaScience 12 (2023)
Qiqi Zhao, Zhenping Lin, Junpeng Chen, Zi Xie, Jun Wang, Keyu Feng, Wencheng Lin, Hongxin Li, Zezhong Hu, Weiguo Chen, Feng Chen, Muhammad Junaid, Huanmin Zhang, Qingmei Xie, Xinheng Zhang
Chromosome-level genome assembly of goose provides insight into the adaptation and growth of local goose breeds. GigaScience 12 (2023)
Hirotaka Suetake, Tsukasa Fukusato, Takeo Igarashi, Tazro Ohta
Workflow sharing with automated metadata validation and test execution to improve the reusability of published workflows. GigaScience 12 (2023)
Qiqi Zhao, Zhenping Lin, Junpeng Chen, Zi Xie, Jun Wang, Keyu Feng, Wencheng Lin, Hongxin Li, Zezhong Hu, Weiguo Chen, Feng Chen, Muhammad Junaid, Huanmin Zhang, Qingmei Xie, Xinheng Zhang
Chromosome-level genome assembly of goose provides insight into the adaptation and growth of local goose breeds. GigaScience 12 (2023)
Ziyuan Dai, Haoning Wang, Haisheng Wu, Qing Zhang, Likai Ji, Xiaochun Wang, Quan Shen, Shixing Yang, Xiao Ma, Tongling Shan, Wen Zhang
Parvovirus dark matter in the cloaca of wild birds. GigaScience 12 (2023)
Malindrie Dharmaratne, Ameya S Kulkarni, Atefeh Taherian Fard, Jessica Cara Mar
scShapes: a statistical framework for identifying distribution shapes in single-cell RNA-sequencing data. GigaScience 12 (2023)
Bart Nijsse, Peter J Schaap, Jasper J Koehorst
FAIR data station for lightweight metadata management and validation of omics studies. GigaScience 12 (2023)
Erin Robinson, Matthew Buys, John Chodacki, Kristian Garzas, Steven Monfort, Catherine Nancarrow, Maria Praetzellis, Brian Riley, Sarala M Wimalaratne, Neil Davies
FAIR Island: real-world examples of place-based open science. GigaScience 12 (2023)
Pierre-Marie Allard, Arnaud Gaudry, Luis-Manuel Quiros-Guerrero, Adriano Rutz, Miwa Kubo, Tom W N Walker, Emmanuel Defossez, Christophe Long, Antonio Grondin, Bruno David, Jean-Luc Wolfender
Open and reusable annotated mass spectrometry dataset of a chemodiverse collection of 1,600 plant extracts. GigaScience 12 (2023)
Varuni Sarwal, Jaqueline Brito, Serghei Mangul, David Koslicki
TAMPA: interpretable analysis and visualization of metagenomics-based taxon abundance profiles. GigaScience 12 (2023)
Erin Robinson, Matthew Buys, John Chodacki, Kristian Garzas, Steven Monfort, Catherine Nancarrow, Maria Praetzellis, Brian Riley, Sarala M Wimalaratne, Neil Davies
FAIR Island: real-world examples of place-based open science. GigaScience 12 (2023)
Stephanea Sotcheff, Yiyang Zhou, Jason Yeung, Yan Sun, John E Johnson, Bruce E Torbett, Andrew L Routh
ViReMa: a virus recombination mapper of next-generation sequencing data characterizes diverse recombinant viral nucleic acids. GigaScience 12 (2023)
Jesse Farek, Daniel Hughes, William J Salerno, Yiming Zhu, Aishwarya Pisupati, Adam Mansfield, Olga Krasheninina, Adam C English, Ginger A Metcalf, Eric Boerwinkle, Donna M Muzny, Richard A Gibbs, Ziad M Khan, Fritz J Sedlazeck
xAtlas: scalable small variant calling across heterogeneous next-generation sequencing experiments. GigaScience 12 (2023)
Tommaso Lanciano, Aurora Savino, Francesca Porcu, Davide Cittaro, Francesco Bonchi, Paolo Provero
Contrast subgraphs allow comparing homogeneous and heterogeneous networks derived from omics data. GigaScience 12 (2023)
Tommaso Lanciano, Aurora Savino, Francesca Porcu, Davide Cittaro, Francesco Bonchi, Paolo Provero
Contrast subgraphs allow comparing homogeneous and heterogeneous networks derived from omics data. GigaScience 12 (2023)
Varuni Sarwal, Jaqueline Brito, Serghei Mangul, David Koslicki
TAMPA: interpretable analysis and visualization of metagenomics-based taxon abundance profiles. GigaScience 12 (2023)
Zheng-Feng Wang, Mathieu Rouard, Gaëtan Droc, J S Pat Heslop-Harrison, Xue-Jun Ge
Genome assembly of Musa beccarii shows extensive chromosomal rearrangements and genome expansion during evolution of Musaceae genomes. GigaScience 12 (2023)
Tommaso Lanciano, Aurora Savino, Francesca Porcu, Davide Cittaro, Francesco Bonchi, Paolo Provero
Contrast subgraphs allow comparing homogeneous and heterogeneous networks derived from omics data. GigaScience 12 (2023)
Qiqi Zhao, Zhenping Lin, Junpeng Chen, Zi Xie, Jun Wang, Keyu Feng, Wencheng Lin, Hongxin Li, Zezhong Hu, Weiguo Chen, Feng Chen, Muhammad Junaid, Huanmin Zhang, Qingmei Xie, Xinheng Zhang
Chromosome-level genome assembly of goose provides insight into the adaptation and growth of local goose breeds. GigaScience 12 (2023)
Zheng-Feng Wang, Mathieu Rouard, Gaëtan Droc, J S Pat Heslop-Harrison, Xue-Jun Ge
Genome assembly of Musa beccarii shows extensive chromosomal rearrangements and genome expansion during evolution of Musaceae genomes. GigaScience 12 (2023)
Jeremiah Miller, Aleksey V Zimin, Andrew Gordus
Chromosome-level genome and the identification of sex chromosomes in Uloborus diversus. GigaScience 12 (2023)
Valentin Hinterberger, Dimitar Douchkov, Stefanie Lueck, Jochen C Reif, Albert Wilhelm Schulthess
High-throughput imaging of powdery mildew resistance of the winter wheat collection hosted at the German Federal ex situ Genebank for Agricultural and Horticultural Crops. GigaScience 12 (2023)
Ziyuan Dai, Haoning Wang, Haisheng Wu, Qing Zhang, Likai Ji, Xiaochun Wang, Quan Shen, Shixing Yang, Xiao Ma, Tongling Shan, Wen Zhang
Parvovirus dark matter in the cloaca of wild birds. GigaScience 12 (2023)
Qiqi Zhao, Zhenping Lin, Junpeng Chen, Zi Xie, Jun Wang, Keyu Feng, Wencheng Lin, Hongxin Li, Zezhong Hu, Weiguo Chen, Feng Chen, Muhammad Junaid, Huanmin Zhang, Qingmei Xie, Xinheng Zhang
Chromosome-level genome assembly of goose provides insight into the adaptation and growth of local goose breeds. GigaScience 12 (2023)
Alex Di Genova, Lise Mangiante, Alexandra Sexton-Oates, Catherine Voegele, Lynnette Fernandez-Cuesta, Nicolas Alcala, Matthieu Foll
A molecular phenotypic map of malignant pleural mesothelioma. GigaScience 12 (2023)
Alex Di Genova, Lise Mangiante, Alexandra Sexton-Oates, Catherine Voegele, Lynnette Fernandez-Cuesta, Nicolas Alcala, Matthieu Foll
A molecular phenotypic map of malignant pleural mesothelioma. GigaScience 12 (2023)
Kshitij Tandon, Francesco Ricci, Joana F Costa, Mónica Medina, Michael Kühl, Linda L Blackall, Heroen Verbruggen
Genomic view of the diversity and functional role of archaea and bacteria in the skeleton of the reef-building corals Porites lutea and Isopora palifera. GigaScience 12 (2023)
Alex Di Genova, Lise Mangiante, Alexandra Sexton-Oates, Catherine Voegele, Lynnette Fernandez-Cuesta, Nicolas Alcala, Matthieu Foll
A molecular phenotypic map of malignant pleural mesothelioma. GigaScience 12 (2023)
Pierre-Marie Allard, Arnaud Gaudry, Luis-Manuel Quiros-Guerrero, Adriano Rutz, Miwa Kubo, Tom W N Walker, Emmanuel Defossez, Christophe Long, Antonio Grondin, Bruno David, Jean-Luc Wolfender
Open and reusable annotated mass spectrometry dataset of a chemodiverse collection of 1,600 plant extracts. GigaScience 12 (2023)
Valentin Hinterberger, Dimitar Douchkov, Stefanie Lueck, Jochen C Reif, Albert Wilhelm Schulthess
High-throughput imaging of powdery mildew resistance of the winter wheat collection hosted at the German Federal ex situ Genebank for Agricultural and Horticultural Crops. GigaScience 12 (2023)
Jesse Farek, Daniel Hughes, William J Salerno, Yiming Zhu, Aishwarya Pisupati, Adam Mansfield, Olga Krasheninina, Adam C English, Ginger A Metcalf, Eric Boerwinkle, Donna M Muzny, Richard A Gibbs, Ziad M Khan, Fritz J Sedlazeck
xAtlas: scalable small variant calling across heterogeneous next-generation sequencing experiments. GigaScience 12 (2023)
Pierre-Marie Allard, Arnaud Gaudry, Luis-Manuel Quiros-Guerrero, Adriano Rutz, Miwa Kubo, Tom W N Walker, Emmanuel Defossez, Christophe Long, Antonio Grondin, Bruno David, Jean-Luc Wolfender
Open and reusable annotated mass spectrometry dataset of a chemodiverse collection of 1,600 plant extracts. GigaScience 12 (2023)
Simeng Yu, Zihua Liu, Ming Li, Dongke Zhou, Ping Hua, Hong Cheng, Wenlei Fan, Yaxi Xu, Dapeng Liu, Suyun Liang, Yunsheng Zhang, Ming Xie, Jing Tang, Yu Jiang, Shuisheng Hou, Zheng-Kui Zhou
Resequencing of a Pekin duck breeding population provides insights into the genomic response to short-term artificial selection. GigaScience 12 (2023)
Stephanea Sotcheff, Yiyang Zhou, Jason Yeung, Yan Sun, John E Johnson, Bruce E Torbett, Andrew L Routh
ViReMa: a virus recombination mapper of next-generation sequencing data characterizes diverse recombinant viral nucleic acids. GigaScience 12 (2023)
Chen Yang, Theodora Lo, Ka Ming Nip, Saber Hafezqorani, Rene L Warren, Inanc Birol
Characterization and simulation of metagenomic nanopore sequencing data with Meta-NanoSim. GigaScience 12 (2023)
Chen Yang, Theodora Lo, Ka Ming Nip, Saber Hafezqorani, Rene L Warren, Inanc Birol
Characterization and simulation of metagenomic nanopore sequencing data with Meta-NanoSim. GigaScience 12 (2023)
Bart Nijsse, Peter J Schaap, Jasper J Koehorst
FAIR data station for lightweight metadata management and validation of omics studies. GigaScience 12 (2023)
Bart Nijsse, Peter J Schaap, Jasper J Koehorst
FAIR data station for lightweight metadata management and validation of omics studies. GigaScience 12 (2023)