Karissa Y Sanbonmatsu (Karissa Sanbonmatsu)

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 14

Top Topics

Molecular Dynamics Simulations

Quality Control

Top Venues

Communications biology

Research square

Nature communications

The journal of physical chemistry. B

This page only lists publications with an associated author ORCID identifier.

Publications

Ankush Singhal, Cullen Roth, Sofiya N Micheva-Viteva, Vrinda Venu, Anna Lappala, Jeannie T Lee, Shawn R Starkenburg, Christina R Steadman Tyler, Karissa Y Sanbonmatsu
Human Coronavirus Infection Reorganizes Spatial Genomic Architecture in Permissive Lung Cells. Research square (2024)
Vrinda Venu, Cullen Roth, Samantha H Adikari, Eric M Small, Shawn R Starkenburg, Karissa Y Sanbonmatsu, Christina R Steadman Tyler
Multi-omics analysis reveals the dynamic interplay between Vero host chromatin structure and function during vaccinia virus infection. Communications biology 7 (1) (2024)
Vrinda Venu, Cullen Roth, Samantha H Adikari, Eric M Small, Shawn R Starkenburg, Karissa Y Sanbonmatsu, Christina R Steadman Tyler
Multi-omics analysis reveals the dynamic interplay between Vero host chromatin structure and function during vaccinia virus infection. Communications biology 7 (1) (2024)
Karissa Y Sanbonmatsu, Ankush Singhal, Cullen Roth, Sofiya N Micheva-Viteva, Vrinda Venu, Anna Lappala, Jeannie T Lee, Shawn Starkenburg, Christina R Steadman Tyler
Human Coronavirus Infection Reorganizes Spatial Genomic Architecture in Permissive Lung Cells. Research square (2024)
Vrinda Venu, Cullen Roth, Samantha H Adikari, Eric M Small, Shawn R Starkenburg, Karissa Y Sanbonmatsu, Christina R Steadman Tyler
Multi-omics analysis reveals the dynamic interplay between Vero host chromatin structure and function during vaccinia virus infection. Communications biology 7 (1) (2024)
Paul Victor Sauer, Egor Pavlenko, Trinity Cookis, Linda C Zirden, Juliane Renn, Ankush Singhal, Pascal Hunold, Michaela N Hoehne, Olivia van Ray, Robert Hänsel-Hertsch, Karissa Y Sanbonmatsu, Eva Nogales, Simon Poepsel
Activation of automethylated PRC2 by dimerization on chromatin. bioRxiv : the preprint server for biology (2023)
Dylan Girodat, Hans-Joachim Wieden, Scott C Blanchard, Karissa Y Sanbonmatsu
Geometric alignment of aminoacyl-tRNA relative to catalytic centers of the ribosome underpins accurate mRNA decoding. Nature communications 14 (1) (2023)
Wataru Nishima, Dylan Girodat, Mikael Holm, Emily J Rundlet, Jose L Alejo, Kara Fischer, Scott C Blanchard, Karissa Y Sanbonmatsu
Hyper-swivel head domain motions are required for complete mRNA-tRNA translocation and ribosome resetting. Nucleic acids research 50 (14) (2022)
Jacob Carlson Miner, Anna Lappala, Paul W Fenimore, William M Fischer, Benjamin H McMahon, Nicolas W Hengartner, Karissa Y Sanbonmatsu, Chang-Shung Tung
Modeling the Influenza A NP-vRNA-Polymerase Complex in Atomic Detail. Biomolecules 11 (1) (2021)
Karissa Y Sanbonmatsu
Getting to the bottom of lncRNA mechanism: structure-function relationships. Mammalian genome : official journal of the International Mammalian Genome Society (2021)
Raju Sarkar, Akhilesh Jaiswar, Scott P Hennelly, José Nelson Onuchic, Karissa Y Sanbonmatsu, Susmita Roy
Chelated Magnesium Logic Gate Regulates Riboswitch Pseudoknot Formation. The journal of physical chemistry. B 125 (24) (2021)
Dylan Girodat, Avik K Pati, Daniel S Terry, Scott C Blanchard, Karissa Y Sanbonmatsu
Quantitative comparison between sub-millisecond time resolution single-molecule FRET measurements and 10-second molecular simulations of a biosensor protein. PLoS computational biology 16 (11) (2020)
Doo Nam Kim, Dominik Gront, Karissa Y Sanbonmatsu
Practical Considerations for Atomistic Structure Modeling with Cryo-EM Maps. Journal of chemical information and modeling 60 (5) (2020)
Doo Nam Kim, Bernhard C Thiel, Tyler Mrozowich, Scott P Hennelly, Ivo L Hofacker, Trushar R Patel, Karissa Y Sanbonmatsu
Zinc-finger protein CNBP alters the 3-D structure of lncRNA Braveheart in solution. Nature communications 11 (1) (2020)