Ivo L Hofacker (Ivo Hofacker)

Scopus Author ID ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 19

Top Venues

Nucleic acids research

Bioinformatics (Oxford, England)

RNA (New York, N.Y.)

RNA biology

University of Vienna

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Vienna

Austria

Professor :: Chemistry / Computer Science

Publications

Bernhard C Thiel, Giovanni Bussi, Simón Poblete, Ivo L Hofacker
Sampling globally and locally correct RNA 3D structures using Ernwin, SPQR and experimental SAXS data. Nucleic acids research (2024)
Maria Waldl, Hua-Ting Yao, Ivo L Hofacker
Sequence Design for RNA-RNA Interactions. Methods in molecular biology (Clifton, N.J.) 2847 (2024)
Tom Rappol, Maria Waldl, Anastasia Chugunova, Ivo L Hofacker, Andrea Pauli, Elisa Vilardo
tRNA expression and modification landscapes, and their dynamics during zebrafish embryo development. Nucleic acids research (2024)
Kai Ruan, German Farinas Perez, Jiaqi Liu, Miroslav Kubat, Ivo L Hofacker, Stefan Wuchty, Rong Grace Zhai
MicroRNA-Mediated Obstruction of Stem-loop Alternative Splicing (MIMOSAS): a global mechanism for the regulation of alternative splicing. bioRxiv : the preprint server for biology (2023)
Stefan Badelt, Ronny Lorenz, Ivo L Hofacker
DrTransformer: heuristic cotranscriptional RNA folding using the nearest neighbor energy model. Bioinformatics (Oxford, England) 39 (1) (2023)
Stefan Badelt, Ronny Lorenz, Ivo L Hofacker
DrTransformer: heuristic cotranscriptional RNA folding using the nearest neighbor energy model. Bioinformatics (Oxford, England) 39 (1) (2023)
Tyler Mrozowich, Sean M Park, Maria Waldl, Amy Henrickson, Scott Tersteeg, Corey R Nelson, Anneke De Klerk, Borries Demeler, Ivo L Hofacker, Michael T Wolfinger, Trushar R Patel
Investigating RNA-RNA interactions through computational and biophysical analysis. Nucleic acids research (2023)
Stefan Badelt, Ronny Lorenz, Ivo L Hofacker
DrTransformer: heuristic cotranscriptional RNA folding using the nearest neighbor energy model. Bioinformatics (Oxford, England) 39 (1) (2023)
Irene K Beckmann, Maria Waldl, Sebastian Will, Ivo L Hofacker
3D Feasibility of 2D RNA-RNA Interaction Paths by stepwise Folding Simulations. RNA (New York, N.Y.) (2023)
Rong Grace Zhai, Kai Ruan, German Farinas Perez, Miroslav Kubat, Jiaqi Liu, Ivo L Hofacker, Stefan Wuchty
MicroRNA-Mediated Obstruction of Stem-loop Alternative Splicing (MIMOSAS): a global mechanism for the regulation of alternative splicing. Research square (2023)
Sonja Zayni, Samar Damiati, Susana Moreno-Flores, Fabian Amman, Ivo L Hofacker, David Jin, Eva Kathrin Ehmoser
Enhancing the Cell-Free Expression of Native Membrane Proteins by In Silico Optimization of the Coding Sequence-An Experimental Study of the Human Voltage-Dependent Anion Channel. Membranes 11 (10) (2021)
Devadatta Gosavi, Iwona Wower, Irene K Beckmann, Ivo L Hofacker, Jacek Wower, Michael T Wolfinger, Joanna Sztuba-Solinska
Insights into the secondary and tertiary structure of the Bovine Viral Diarrhea Virus Internal Ribosome Entry Site. RNA biology 19 (1) (2021)
Denisa Petráčková, Mariam R Farman, Fabian Amman, Irena Linhartová, Ana Dienstbier, Dilip Kumar, Jakub Držmíšek, Ivo L Hofacker, Maria Eugenia Rodriguez, Branislav Vecerek
Transcriptional profiling of human macrophages during infection with Bordetella pertussis. RNA biology 17 (5) (2020)
Doo Nam Kim, Bernhard C Thiel, Tyler Mrozowich, Scott P Hennelly, Ivo L Hofacker, Trushar R Patel, Karissa Y Sanbonmatsu
Zinc-finger protein CNBP alters the 3-D structure of lncRNA Braveheart in solution. Nature communications 11 (1) (2020)
Roman Ochsenreiter, Ivo L Hofacker, Michael T Wolfinger
Functional RNA Structures in the 3'UTR of Tick-Borne, Insect-Specific and No-Known-Vector Flaviviruses. Viruses 11 (3) (2019)
Jules Deforges, Rodrigo Siqueira Reis, Philippe Jacquet, Shaoline Sheppard, Veerendra P Gadekar, Gene Hart-Smith, Andrea Tanzer, Ivo L Hofacker, Christian Iseli, Ioannis Xenarios, Yves Poirier
Control of Cognate Sense mRNA Translation by cis-Natural Antisense RNAs. Plant physiology 180 (1) (2019)
Bernhard C Thiel, Roman Ochsenreiter, Veerendra P Gadekar, Andrea Tanzer, Ivo L Hofacker
RNA Structure Elements Conserved between Mouse and 59 Other Vertebrates. Genes 9 (8) (2018)
Florian Eggenhofer, Ivo L Hofacker, Christian Höner Zu Siederdissen
RNAlien - Unsupervised RNA family model construction. Nucleic acids research 44 (17) (2016)
Vitaly Sedlyarov, Jörg Fallmann, Florian Ebner, Jakob Huemer, Lucy Sneezum, Masa Ivin, Kristina Kreiner, Andrea Tanzer, Claus Vogl, Ivo L Hofacker, Pavel Kovarik
Tristetraprolin binding site atlas in the macrophage transcriptome reveals a switch for inflammation resolution. Molecular systems biology 12 (5) (2016)
Peter Kerpedjiev, Christian Höner Zu Siederdissen, Ivo L Hofacker
Predicting RNA 3D structure using a coarse-grain helix-centered model. RNA (New York, N.Y.) 21 (6) (2015)
Jörg Fallmann, Vitaly Sedlyarov, Andrea Tanzer, Pavel Kovarik, Ivo L Hofacker
AREsite2: an enhanced database for the comprehensive investigation of AU/GU/U-rich elements. Nucleic acids research 44 (D1) (2015)

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Publication Activity (10 Years)

Top Topics

Top Venues

Ivo L Hofacker (Ivo Hofacker)