Kimberley D Seed (Kimberley Seed, Kimberly D Seed)

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 58

Top Topics

Pseudomonas Aeruginosa

Gene Expression

Top Venues

bioRxiv : the preprint server for biology

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Caroline M Boyd, Sundharraman Subramanian, Drew T Dunham, Kristin N Parent, Kimberley D Seed
A Vibrio cholerae viral satellite maximizes its spread and inhibits phage by remodeling hijacked phage coat proteins into small capsids. eLife 12 (2024)
Yulduz Rakibova, Drew T Dunham, Kimberley D Seed, Peter L Freddolino
Nucleoid-associated proteins shape the global protein occupancy and transcriptional landscape of a clinical isolate of Vibrio cholerae . mSphere (2024)
Yulduz Rakibova, Drew T Dunham, Kimberley D Seed, Peter L Freddolino
Nucleoid-associated proteins shape the global protein occupancy and transcriptional landscape of a clinical isolate of Vibrio cholerae . bioRxiv : the preprint server for biology (2024)
Caroline M Boyd, Kimberley D Seed
A phage satellite manipulates the viral DNA packaging motor to inhibit phage and promote satellite spread. bioRxiv : the preprint server for biology (2024)
Yulduz Rakibova, Drew T Dunham, Kimberley D Seed, Peter L Freddolino
Nucleoid-associated proteins shape the global protein occupancy and transcriptional landscape of a clinical isolate of Vibrio cholerae . bioRxiv : the preprint server for biology (2024)
Caroline M Boyd, Kimberley D Seed
A phage satellite manipulates the viral DNA packaging motor to inhibit phage and promote satellite spread. bioRxiv : the preprint server for biology (2024)
Caroline M Boyd, Kimberley D Seed
A phage satellite manipulates the viral DNA packaging motor to inhibit phage and promote satellite spread. bioRxiv : the preprint server for biology (2024)
Reid T Oshiro, Drew T Dunham, Kimberley D Seed
The vibriophage-encoded inhibitor OrbA abrogates BREX-mediated defense through the ATPase BrxC. bioRxiv : the preprint server for biology (2024)
Yulduz Rakibova, Drew T Dunham, Kimberley D Seed, Peter L Freddolino
Nucleoid-associated proteins shape the global protein occupancy and transcriptional landscape of a clinical isolate of Vibrio cholerae . bioRxiv : the preprint server for biology (2024)
Yulduz Rakibova, Drew T Dunham, Kimberley D Seed, Peter L Freddolino
Nucleoid-associated proteins shape the global protein occupancy and transcriptional landscape of a clinical isolate of Vibrio cholerae . mSphere 9 (7) (2024)
Yulduz Rakibova, Drew T Dunham, Kimberley D Seed, Peter L Freddolino
Nucleoid-associated proteins shape the global protein occupancy and transcriptional landscape of a clinical isolate of Vibrio cholerae. bioRxiv : the preprint server for biology (2024)
Yulduz Rakibova, Drew T Dunham, Kimberley D Seed, Peter L Freddolino
Nucleoid-associated proteins shape the global protein occupancy and transcriptional landscape of a clinical isolate of Vibrio cholerae . mSphere 9 (7) (2024)
Caroline M Boyd, Sundharraman Subramanian, Drew T Dunham, Kristin N Parent, Kimberley D Seed
A Vibrio cholerae viral satellite maximizes its spread and inhibits phage by remodeling hijacked phage coat proteins into small capsids. eLife 12 (2024)
Yulduz Rakibova, Drew T Dunham, Kimberley D Seed, Peter L Freddolino
Nucleoid-associated proteins shape the global protein occupancy and transcriptional landscape of a clinical isolate of Vibrio cholerae. bioRxiv : the preprint server for biology (2024)
Yulduz Rakibova, Drew T Dunham, Kimberley D Seed, Peter L Freddolino
Nucleoid-associated proteins shape the global protein occupancy and transcriptional landscape of a clinical isolate of Vibrio cholerae. bioRxiv : the preprint server for biology (2024)
Reid T Oshiro, Drew T Dunham, Kimberley D Seed
The vibriophage-encoded inhibitor OrbA abrogates BREX-mediated defense through the ATPase BrxC. bioRxiv : the preprint server for biology (2024)
Caroline M Boyd, Sundharraman Subramanian, Drew T Dunham, Kristin N Parent, Kimberley D Seed
A Vibrio cholerae viral satellite maximizes its spread and inhibits phage by remodeling hijacked phage coat proteins into small capsids. eLife 12 (2024)
Caroline M Boyd, Sundharraman Subramanian, Drew T Dunham, Kristin N Parent, Kimberley D Seed
A Vibrio cholerae viral satellite maximizes its spread and inhibits phage by remodeling hijacked phage coat proteins into small capsids. eLife 12 (2024)
Caroline M Boyd, Kimberley D Seed
A phage satellite manipulates the viral DNA packaging motor to inhibit phage and promote satellite spread. Nucleic acids research (2024)
Caroline M Boyd, Kimberley D Seed
A phage satellite manipulates the viral DNA packaging motor to inhibit phage and promote satellite spread. bioRxiv : the preprint server for biology (2024)
Kishen M Patel, Kimberley D Seed
Sporadic phage defense in epidemic Vibrio cholerae mediated by the toxin-antitoxin system DarTG is countered by a phage-encoded antitoxin mimic. mBio (2024)
Yulduz Rakibova, Drew T Dunham, Kimberley D Seed, Peter L Freddolino
Nucleoid-associated proteins shape the global protein occupancy and transcriptional landscape of a clinical isolate of Vibrio cholerae . bioRxiv : the preprint server for biology (2024)
Caroline M Boyd, Sundharraman Subramanian, Drew T Dunham, Kristin N Parent, Kimberley D Seed
A Vibrio cholerae viral satellite maximizes its spread and inhibits phage by remodeling hijacked phage coat proteins into small capsids. eLife 12 (2024)
Yulduz Rakibova, Drew T Dunham, Kimberley D Seed, Peter L Freddolino
Nucleoid-associated proteins shape the global protein occupancy and transcriptional landscape of a clinical isolate of Vibrio cholerae . bioRxiv : the preprint server for biology (2024)
Yulduz Rakibova, Drew T Dunham, Kimberley D Seed, Peter L Freddolino
Nucleoid-associated proteins shape the global protein occupancy and transcriptional landscape of a clinical isolate of Vibrio cholerae . mSphere 9 (7) (2024)
Caroline M Boyd, Kimberley D Seed
A phage satellite manipulates the viral DNA packaging motor to inhibit phage and promote satellite spread. Nucleic acids research (2024)
Yulduz Rakibova, Drew T Dunham, Kimberley D Seed, Peter L Freddolino
Nucleoid-associated proteins shape the global protein occupancy and transcriptional landscape of a clinical isolate of Vibrio cholerae . mSphere (2024)
Md Mamun Monir, Mohammad Tarequl Islam, Razib Mazumder, Dinesh Mondal, Kazi Sumaita Nahar, Marzia Sultana, Masatomo Morita, Makoto Ohnishi, Anwar Huq, Haruo Watanabe, Firdausi Qadri, Mustafizur Rahman, Nicholas R Thomson, Kimberley D Seed, Rita R Colwell, Tahmeed Ahmed, Munirul Alam
Genomic attributes of Vibrio cholerae O1 responsible for 2022 massive cholera outbreak in Bangladesh. Nature communications 14 (1) (2023)
Caroline M Boyd, Sundharraman Subramanian, Drew T Dunham, Kristin N Parent, Kimberley D Seed
A Vibrio cholerae viral satellite maximizes its spread and inhibits phage by remodeling hijacked phage coat proteins into small capsids. bioRxiv : the preprint server for biology (2023)
Kishen M Patel, Kimberley D Seed
Sporadic phage defense in epidemic Vibrio cholerae mediated by the toxin-antitoxin system DarTG is countered by a phage-encoded antitoxin mimic. bioRxiv : the preprint server for biology (2023)
Kishen M Patel, Kimberley D Seed
Sporadic phage defense in epidemic Vibrio cholerae mediated by the toxin-antitoxin system DarTG is countered by a phage-encoded antitoxin mimic. bioRxiv : the preprint server for biology (2023)
Zachary K Barth, Drew T Dunham, Kimberley D Seed
Nuclease genes occupy boundaries of genetic exchange between bacteriophages. NAR genomics and bioinformatics 5 (3) (2023)
Md Mamun Monir, Mohammad Tarequl Islam, Razib Mazumder, Dinesh Mondal, Kazi Sumaita Nahar, Marzia Sultana, Masatomo Morita, Makoto Ohnishi, Anwar Huq, Haruo Watanabe, Firdausi Qadri, Mustafizur Rahman, Nicholas R Thomson, Kimberley D Seed, Rita R Colwell, Tahmeed Ahmed, Munirul Alam
Genomic attributes of Vibrio cholerae O1 responsible for 2022 massive cholera outbreak in Bangladesh. Nature communications 14 (1) (2023)
Zoe Netter, Drew T Dunham, Kimberley D Seed
Adaptation to bile and anaerobicity limits Vibrio cholerae phage adsorption. mBio (2023)
Md Mamun Monir, Mohammad Tarequl Islam, Razib Mazumder, Dinesh Mondal, Kazi Sumaita Nahar, Marzia Sultana, Masatomo Morita, Makoto Ohnishi, Anwar Huq, Haruo Watanabe, Firdausi Qadri, Mustafizur Rahman, Nicholas R Thomson, Kimberley D Seed, Rita R Colwell, Tahmeed Ahmed, Munirul Alam
Genomic attributes of Vibrio cholerae O1 responsible for 2022 massive cholera outbreak in Bangladesh. Nature communications 14 (1) (2023)
Kishen M Patel, Kimberley D Seed
Sporadic phage defense in epidemic Vibrio cholerae mediated by the toxin-antitoxin system DarTG is countered by a phage-encoded antitoxin mimic. bioRxiv : the preprint server for biology (2023)
Drew T Dunham, Angus Angermeyer, Kimberley D Seed
The RNA-RNA interactome between a phage and its satellite virus reveals a small RNA that differentially regulates gene expression across both genomes. Molecular microbiology (2023)
Md Mamun Monir, Mohammad Tarequl Islam, Razib Mazumder, Dinesh Mondal, Kazi Sumaita Nahar, Marzia Sultana, Masatomo Morita, Makoto Ohnishi, Anwar Huq, Haruo Watanabe, Firdausi Qadri, Mustafizur Rahman, Nicholas R Thomson, Kimberley D Seed, Rita R Colwell, Tahmeed Ahmed, Munirul Alam
Genomic attributes of Vibrio cholerae O1 responsible for 2022 massive cholera outbreak in Bangladesh. Nature communications 14 (1) (2023)
Zachary K Barth, Drew T Dunham, Kimberley D Seed
Nuclease genes occupy boundaries of genetic exchange between bacteriophages. bioRxiv : the preprint server for biology (2023)
Caroline M Boyd, Sundharraman Subramanian, Drew T Dunham, Kristin N Parent, Kimberley D Seed
A Vibrio cholerae viral satellite maximizes its spread and inhibits phage by remodeling hijacked phage coat proteins into small capsids. bioRxiv : the preprint server for biology (2023)
Drew T Dunham, Angus Angermeyer, Kimberley D Seed
The RNA-RNA interactome between a phage and its satellite virus reveals a small RNA that differentially regulates gene expression across both genomes. Molecular microbiology (2023)
Kishen M Patel, Kimberley D Seed
Sporadic phage defense in epidemic Vibrio cholerae mediated by the toxin-antitoxin system DarTG is countered by a phage-encoded antitoxin mimic. bioRxiv : the preprint server for biology (2023)
Md Mamun Monir, Mohammad Tarequl Islam, Razib Mazumder, Dinesh Mondal, Kazi Sumaita Nahar, Marzia Sultana, Masatomo Morita, Makoto Ohnishi, Anwar Huq, Haruo Watanabe, Firdausi Qadri, Mustafizur Rahman, Nicholas R Thomson, Kimberley D Seed, Rita R Colwell, Tahmeed Ahmed, Munirul Alam
Genomic attributes of Vibrio cholerae O1 responsible for 2022 massive cholera outbreak in Bangladesh. Nature communications 14 (1) (2023)
Angus Angermeyer, Stephanie G Hays, Maria H T Nguyen, Fatema-Tuz Johura, Marzia Sultana, Munirul Alam, Kimberley D Seed
Evolutionary Sweeps of Subviral Parasites and Their Phage Host Bring Unique Parasite Variants and Disappearance of a Phage CRISPR-Cas System. mBio (2022)
Kristen N LeGault, Zachary K Barth, Peter DePaola, Kimberley D Seed
A phage parasite deploys a nicking nuclease effector to inhibit viral host replication. Nucleic acids research 50 (15) (2022)
Rodrigo Ibarra-Chávez, Mads Frederik Hansen, Rafael Pinilla-Redondo, Kimberley D Seed, Urvish Trivedi
Phage satellites and their emerging applications in biotechnology. FEMS microbiology reviews 45 (6) (2022)
Maria H T Nguyen, Zoe Netter, Angus Angermeyer, Kimberley D Seed
A phage weaponizes a satellite recombinase to subvert viral restriction. Nucleic acids research 50 (19) (2022)
Md Mamun Monir, Talal Hossain, Masatomo Morita, Makoto Ohnishi, Fatema-Tuz Johura, Marzia Sultana, Shirajum Monira, Tahmeed Ahmed, Nicholas Thomson, Haruo Watanabe, Anwar Huq, Rita C Colwell, Kimberley D Seed, Munirul Alam
Genomic Characteristics of Recently Recognized Vibrio cholerae El Tor Lineages Associated with Cholera in Bangladesh, 1991 to 2017. Microbiology spectrum 10 (2) (2022)
Zachary K Barth, Maria Ht Nguyen, Kimberley D Seed
A chimeric nuclease substitutes a phage CRISPR-Cas system to provide sequence-specific immunity against subviral parasites. eLife 10 (2021)
Zoe Netter, Caroline M Boyd, Tania V Silvas, Kimberley D Seed
A phage satellite tunes inducing phage gene expression using a domesticated endonuclease to balance inhibition and virion hijacking. Nucleic acids research 49 (8) (2021)
Kristen N LeGault, Stephanie G Hays, Angus Angermeyer, Amelia C McKitterick, Fatema-Tuz Johura, Marzia Sultana, Tahmeed Ahmed, Munirul Alam, Kimberley D Seed
Temporal shifts in antibiotic resistance elements govern phage-pathogen conflicts. Science (New York, N.Y.) 373 (6554) (2021)
Stephanie G Hays, Kimberley D Seed
Dominant Vibrio cholerae phage exhibits lysis inhibition sensitive to disruption by a defensive phage satellite. eLife 9 (2020)
Anne M Stringer, Gabriele Baniulyte, Erica Lasek-Nesselquist, Kimberley D Seed, Joseph T Wade
Transcription termination and antitermination of bacterial CRISPR arrays. eLife 9 (2020)
Zachary K Barth, Zoe Netter, Angus Angermeyer, Pooja Bhardwaj, Kimberley D Seed
A Family of Viral Satellites Manipulates Invading Virus Gene Expression and Can Affect Cholera Toxin Mobilization. mSystems 5 (5) (2020)
Audra E Devoto, Joanne M Santini, Matthew R Olm, Karthik Anantharaman, Patrick Munk, Jenny Tung, Elizabeth A Archie, Peter J Turnbaugh, Kimberley D Seed, Ran Blekhman, Frank Møller Aarestrup, Brian C Thomas, Jillian F Banfield
Megaphages infect Prevotella and variants are widespread in gut microbiomes. Nature microbiology 4 (4) (2019)
Amelia C McKitterick, Kimberley D Seed
Anti-phage islands force their target phage to directly mediate island excision and spread. Nature communications 9 (1) (2018)
Angus Angermeyer, Moon Moon Das, Durg Vijai Singh, Kimberley D Seed
Analysis of 19 Highly Conserved Vibrio cholerae Bacteriophages Isolated from Environmental and Patient Sources Over a Twelve-Year Period. Viruses 10 (6) (2018)
Brendan J O'Hara, Zachary K Barth, Amelia C McKitterick, Kimberley D Seed
A highly specific phage defense system is a conserved feature of the Vibrio cholerae mobilome. PLoS genetics 13 (6) (2017)