Nicholas R Thomson (Nick Thomson, Nicholas Thomson)

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 37

Top Venues

Nature communications

Science (New York, N.Y.)

Nature microbiology

Communications biology

Wellcome Trust Sanger Institute

University of Warwick (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Wellcome Trust Sanger Institute Jul 01 2014

United Kingdom

Pathogen Faculty Group Head :: Parasites and Microbes

London School of Hygiene and Tropical Medicine Oct 01 2013

United Kingdom

Professor of Bacterial Genomics and evolution :: Pathogen Molecular Biology

University of St Andrews Sep 01 2011

United Kingdom

Professor :: School of Medicine

Wellcome Trust Sanger Institute Aug 01 2013 - Jul 01 2014

United Kingdom

Principal Scientist :: Pathogens

Wellcome Trust Sanger Institute Jun 01 2006 - Aug 01 2013

United Kingdom

Senior Scientist :: Pathogens

Wellcome Trust Sanger Institute Aug 01 1999 - Jun 01 2006

United Kingdom

Senior Computer Biologist :: Pathogens

University of Cambridge Oct 01 1996 - Aug 01 1999

United Kingdom

Postdoctoral Fellow :: Department of Biochemistry

University of Warwick Aug 01 1991 - Jun 01 1992

United Kingdom

Research Assistant :: Biological Sciences

Education History

University of Warwick Sep 01 1992 - Aug 01 1996

United Kingdom

PHD :: Biological Sciences

University of Warwick Aug 01 1988 - Jul 29 1991

United Kingdom

BSC :: Biological Sciences

Publications

Rathanin Seng, Chalita Chomkatekaew, Sarunporn Tandhavanant, Natnaree Saiprom, Rungnapa Phunpang, Janjira Thaipadungpanit, Elizabeth M Batty, Nicholas P J Day, Wasun Chantratita, Timothy Eoin West, Nicholas R Thomson, Julian Parkhill, Claire Chewapreecha, Narisara Chantratita
Genetic diversity, determinants, and dissemination of Burkholderia pseudomallei lineages implicated in melioidosis in Northeast Thailand. Nature communications 15 (1) (2024)
Aaron Weimann, Adam M Dinan, Christopher Ruis, Audrey Bernut, Stéphane Pont, Karen P Brown, Judy Ryan, Lúcia Santos, Louise Ellison, Emem Ukor, Arun Prasad Pandurangan, Sina Krokowski, Thomas L Blundell, Martin Welch, Beth Blane, Kim Judge, Rachel Bousfield, Nicholas M Brown, Josephine M Bryant, Irena Kukavica-Ibrulj, Giordano Rampioni, Livia Leoni, Patrick T Harrison, Sharon J Peacock, Nicholas R Thomson, Jeff Gauthier, Joanne L Fothergill, Roger C Levesque, Julian Parkhill, R Andres Floto
Evolution and host-specific adaptation of Pseudomonas aeruginosa . Science (New York, N.Y.) 385 (6704) (2024)
Rathanin Seng, Chalita Chomkatekaew, Sarunporn Tandhavanant, Natnaree Saiprom, Rungnapa Phunpang, Janjira Thaipadungpanit, Elizabeth M Batty, Nicholas P J Day, Wasun Chantratita, Timothy Eoin West, Nicholas R Thomson, Julian Parkhill, Claire Chewapreecha, Narisara Chantratita
Genetic diversity, determinants, and dissemination of Burkholderia pseudomallei lineages implicated in melioidosis in Northeast Thailand. Nature communications 15 (1) (2024)
Rathanin Seng, Chalita Chomkatekaew, Sarunporn Tandhavanant, Natnaree Saiprom, Rungnapa Phunpang, Janjira Thaipadungpanit, Elizabeth M Batty, Nicholas P J Day, Wasun Chantratita, Timothy Eoin West, Nicholas R Thomson, Julian Parkhill, Claire Chewapreecha, Narisara Chantratita
Genetic diversity, determinants, and dissemination of Burkholderia pseudomallei lineages implicated in melioidosis in Northeast Thailand. Nature communications 15 (1) (2024)
Rathanin Seng, Chalita Chomkatekaew, Sarunporn Tandhavanant, Natnaree Saiprom, Rungnapa Phunpang, Janjira Thaipadungpanit, Elizabeth M Batty, Nicholas P J Day, Wasun Chantratita, Timothy Eoin West, Nicholas R Thomson, Julian Parkhill, Claire Chewapreecha, Narisara Chantratita
Genetic diversity, determinants, and dissemination of Burkholderia pseudomallei lineages implicated in melioidosis in Northeast Thailand. Nature communications 15 (1) (2024)
Aaron Weimann, Adam M Dinan, Christopher Ruis, Audrey Bernut, Stéphane Pont, Karen P Brown, Judy Ryan, Lúcia Santos, Louise Ellison, Emem Ukor, Arun Prasad Pandurangan, Sina Krokowski, Thomas L Blundell, Martin Welch, Beth Blane, Kim Judge, Rachel Bousfield, Nicholas M Brown, Josephine M Bryant, Irena Kukavica-Ibrulj, Giordano Rampioni, Livia Leoni, Patrick T Harrison, Sharon J Peacock, Nicholas R Thomson, Jeff Gauthier, Joanne L Fothergill, Roger C Levesque, Julian Parkhill, R Andres Floto
Evolution and host-specific adaptation of Pseudomonas aeruginosa . Science (New York, N.Y.) 385 (6704) (2024)
Rathanin Seng, Chalita Chomkatekaew, Sarunporn Tandhavanant, Natnaree Saiprom, Rungnapa Phunpang, Janjira Thaipadungpanit, Elizabeth M Batty, Nicholas P J Day, Wasun Chantratita, Timothy Eoin West, Nicholas R Thomson, Julian Parkhill, Claire Chewapreecha, Narisara Chantratita
Genetic diversity, determinants, and dissemination of Burkholderia pseudomallei lineages implicated in melioidosis in Northeast Thailand. Nature communications 15 (1) (2024)
Rathanin Seng, Chalita Chomkatekaew, Sarunporn Tandhavanant, Natnaree Saiprom, Rungnapa Phunpang, Janjira Thaipadungpanit, Elizabeth M Batty, Nicholas P J Day, Wasun Chantratita, Timothy Eoin West, Nicholas R Thomson, Julian Parkhill, Claire Chewapreecha, Narisara Chantratita
Genetic diversity, determinants, and dissemination of Burkholderia pseudomallei lineages implicated in melioidosis in Northeast Thailand. Nature communications 15 (1) (2024)
Rathanin Seng, Chalita Chomkatekaew, Sarunporn Tandhavanant, Natnaree Saiprom, Rungnapa Phunpang, Janjira Thaipadungpanit, Elizabeth M Batty, Nicholas P J Day, Wasun Chantratita, Timothy Eoin West, Nicholas R Thomson, Julian Parkhill, Claire Chewapreecha, Narisara Chantratita
Genetic diversity, determinants, and dissemination of Burkholderia pseudomallei lineages implicated in melioidosis in Northeast Thailand. Nature communications 15 (1) (2024)
Md Mamun Monir, Mohammad Tarequl Islam, Razib Mazumder, Dinesh Mondal, Kazi Sumaita Nahar, Marzia Sultana, Masatomo Morita, Makoto Ohnishi, Anwar Huq, Haruo Watanabe, Firdausi Qadri, Mustafizur Rahman, Nicholas R Thomson, Kimberley D Seed, Rita R Colwell, Tahmeed Ahmed, Munirul Alam
Genomic attributes of Vibrio cholerae O1 responsible for 2022 massive cholera outbreak in Bangladesh. Nature communications 14 (1) (2023)
Florent Lassalle, Salah Al-Shalali, Mukhtar Al-Hakimi, Elisabeth Njampeko, Ismail Mahat Bashir, Matthew J Dorman, Jean Rauzier, Grace A Blackwell, Alyce Taylor-Brown, Mathew A Beale, Adrian Cazares, Ali Abdullah Al-Somainy, Anas Al-Mahbashi, Khaled Almoayed, Mohammed Aldawla, Abdulelah Al-Harazi, Marie-Laure Quilici, François-Xavier Weill, Ghulam Dhabaan, Nicholas R Thomson
Genomic epidemiology reveals multidrug resistant plasmid spread between Vibrio cholerae lineages in Yemen. Nature microbiology 8 (10) (2023)
Alyce Taylor-Brown, Mokibul Hassan Afrad, Ashraful Islam Khan, Florent Lassalle, Md Taufiqul Islam, Nabid Anjum Tanvir, Nicholas R Thomson, Firdausi Qadri
Genomic epidemiology of Vibrio cholerae during a mass vaccination campaign of displaced communities in Bangladesh. Nature communications 14 (1) (2023)
Hao Chung The, Phuong Pham, Tuyen Ha Thanh, Linh Vo Kim Phuong, Nguyen Phuong Yen, Son-Nam H Le, Duong Vu Thuy, Tran Thi Hong Chau, Hoang Le Phuc, Nguyen Minh Ngoc, Lu Lan Vi, Alison E Mather, Guy E Thwaites, Nicholas R Thomson, Stephen Baker, Duy Thanh Pham
Multidrug resistance plasmids underlie clonal expansions and international spread of Salmonella enterica serotype 1,4,[5],12:i:- ST34 in Southeast Asia. Communications biology 6 (1) (2023)
Md Mamun Monir, Mohammad Tarequl Islam, Razib Mazumder, Dinesh Mondal, Kazi Sumaita Nahar, Marzia Sultana, Masatomo Morita, Makoto Ohnishi, Anwar Huq, Haruo Watanabe, Firdausi Qadri, Mustafizur Rahman, Nicholas R Thomson, Kimberley D Seed, Rita R Colwell, Tahmeed Ahmed, Munirul Alam
Genomic attributes of Vibrio cholerae O1 responsible for 2022 massive cholera outbreak in Bangladesh. Nature communications 14 (1) (2023)
Sandra Van Puyvelde, Tessa de Block, Sushmita Sridhar, Matt Bawn, Robert A Kingsley, Brecht Ingelbeen, Mathew A Beale, Barbara Barbé, Hyon Jin Jeon, Lisette Mbuyi Kalonji, Marie-France Phoba, Dadi Falay, Delphine Martiny, Olivier Vandenberg, Dissou Affolabi, Jean Pierre Rutanga, Pieter-Jan Ceyssens, Wesley Mattheus, Wim L Cuypers, Marianne Antonia Bernada van der Sande, Se Eun Park, Simon Kariuki, Kephas Otieno, John P A Lusingu, Joyce R Mbwana, Samuel Adjei, Anima Sarfo, Seth O Agyei, Kwaku P Asante, Walter Otieno, Lucas Otieno, Marc Christian Tahita, Palpouguini Lompo, Irving F Hoffman, Tisungane Mvalo, Chisomo Msefula, Fatimah Hassan-Hanga, Stephen Obaro, Grant Mackenzie, Stijn Deborggraeve, Nicholas A Feasey, Florian Marks, Calman A MacLennan, Nicholas R Thomson, Jan Jacobs, Gordon Dougan, Samuel M Kariuki, Octavie Lunguya
A genomic appraisal of invasive Salmonella Typhimurium and associated antibiotic resistance in sub-Saharan Africa. Nature communications 14 (1) (2023)
Sergio Arredondo-Alonso, George Blundell-Hunter, Zuyi Fu, Rebecca A Gladstone, Alfred Fillol-Salom, Jessica Loraine, Elaine Cloutman-Green, Pål J Johnsen, Ørjan Samuelsen, Anna Kaarina Pöntinen, François Cléon, Susana Chavez-Bueno, Miguel A De La Cruz, Miguel A Ares, Manivanh Vongsouvath, Agnieszka Chmielarczyk, Carolyne Horner, Nigel Klein, Alan McNally, Joice N Reis, José R Penadés, Nicholas R Thomson, Jukka Corander, Peter W Taylor, Alex J McCarthy
Evolutionary and functional history of the Escherichia coli K1 capsule. Nature communications 14 (1) (2023)
Wim L Cuypers, Pieter Meysman, François-Xavier Weill, Rene S Hendriksen, Getenet Beyene, John Wain, Satheesh Nair, Marie Anne Chattaway, Blanca M Perez-Sepulveda, Pieter-Jan Ceyssens, Tessa de Block, Winnie W Y Lee, Maria Pardos de la Gandara, Christian Kornschober, Jacob Moran-Gilad, Kees T Veldman, Martin Cormican, Mia Torpdahl, Patricia I Fields, Tomáš Černý, Liselotte Hardy, Bieke Tack, Kate C Mellor, Nicholas R Thomson, Gordon Dougan, Stijn Deborggraeve, Jan Jacobs, Kris Laukens, Sandra Van Puyvelde
A global genomic analysis of Salmonella Concord reveals lineages with high antimicrobial resistance in Ethiopia. Nature communications 14 (1) (2023)
Md Mamun Monir, Mohammad Tarequl Islam, Razib Mazumder, Dinesh Mondal, Kazi Sumaita Nahar, Marzia Sultana, Masatomo Morita, Makoto Ohnishi, Anwar Huq, Haruo Watanabe, Firdausi Qadri, Mustafizur Rahman, Nicholas R Thomson, Kimberley D Seed, Rita R Colwell, Tahmeed Ahmed, Munirul Alam
Genomic attributes of Vibrio cholerae O1 responsible for 2022 massive cholera outbreak in Bangladesh. Nature communications 14 (1) (2023)
Md Mamun Monir, Mohammad Tarequl Islam, Razib Mazumder, Dinesh Mondal, Kazi Sumaita Nahar, Marzia Sultana, Masatomo Morita, Makoto Ohnishi, Anwar Huq, Haruo Watanabe, Firdausi Qadri, Mustafizur Rahman, Nicholas R Thomson, Kimberley D Seed, Rita R Colwell, Tahmeed Ahmed, Munirul Alam
Genomic attributes of Vibrio cholerae O1 responsible for 2022 massive cholera outbreak in Bangladesh. Nature communications 14 (1) (2023)
Md Mamun Monir, Mohammad Tarequl Islam, Razib Mazumder, Dinesh Mondal, Kazi Sumaita Nahar, Marzia Sultana, Masatomo Morita, Makoto Ohnishi, Anwar Huq, Haruo Watanabe, Firdausi Qadri, Mustafizur Rahman, Nicholas R Thomson, Kimberley D Seed, Rita R Colwell, Tahmeed Ahmed, Munirul Alam
Genomic attributes of Vibrio cholerae O1 responsible for 2022 massive cholera outbreak in Bangladesh. Nature communications 14 (1) (2023)
Thandavarayan Ramamurthy, Agila Kumari Pragasam, Alyce Taylor-Brown, Robert C Will, Karthick Vasudevan, Bhabatosh Das, Sunil Kumar Srivastava, Goutam Chowdhury, Asish K Mukhopadhyay, Shanta Dutta, Balaji Veeraraghavan, Nicholas R Thomson, Naresh C Sharma, Gopinath Balakrish Nair, Yoshifumi Takeda, Amit Ghosh, Gordon Dougan, Ankur Mutreja
Vibrio cholerae O139 genomes provide a clue to why it may have failed to usher in the eighth cholera pandemic. Nature communications 13 (1) (2022)
Iman Yassine, Sophie Lefèvre, Elisabeth E Hansen, Corinne Ruckly, Isabelle Carle, Monique Lejay-Collin, Laëtitia Fabre, Rayane Rafei, Dominique Clermont, Maria Pardos de la Gandara, Fouad Dabboussi, Nicholas R Thomson, François-Xavier Weill
Population structure analysis and laboratory monitoring of Shigella by core-genome multilocus sequence typing. Nature communications 13 (1) (2022)
Joseph M Lewis, Madalitso Mphasa, Rachel Banda, Mathew A Beale, Eva Heinz, Jane Mallewa, Christopher Jewell, Brian Faragher, Nicholas R Thomson, Nicholas A Feasey
Colonization dynamics of extended-spectrum beta-lactamase-producing Enterobacterales in the gut of Malawian adults. Nature microbiology 7 (10) (2022)
Samuel M Njoroge, Laure F Madé, Astrid von Mentzer, Benard W Kulohoma, Timothy K K Kamanu, Tom T Ouko, John Kiiru, Melissa J Ward, Nicholas R Thomson, Eric M Fèvre, Mark E J Woolhouse, Samuel Kariuki
Draft Genome Sequence of an Enterotoxigenic Escherichia coli Strain Carrying Genes for Colonization Surface Antigen 13 and a Heat-Labile Toxin. Microbiology resource announcements 11 (10) (2022)
David J Williams, Patrick A D Grimont, Adrian Cazares, Francine Grimont, Elisabeth Ageron, Kerry A Pettigrew, Daniel Cazares, Elisabeth Njamkepo, François-Xavier Weill, Eva Heinz, Matthew T G Holden, Nicholas R Thomson, Sarah J Coulthurst
The genus Serratia revisited by genomics. Nature communications 13 (1) (2022)
Claire L Gorrie, Mirjana Mirčeta, Ryan R Wick, Louise M Judd, Margaret M C Lam, Ryota Gomi, Iain J Abbott, Nicholas R Thomson, Richard A Strugnell, Nigel F Pratt, Jill S Garlick, Kerrie M Watson, Peter C Hunter, David V Pilcher, Steve A McGloughlin, Denis W Spelman, Kelly L Wyres, Adam W J Jenney, Kathryn E Holt
Genomic dissection of Klebsiella pneumoniae infections in hospital patients reveals insights into an opportunistic pathogen. Nature communications 13 (1) (2022)
Mathew A Beale, Michael Marks, Michelle J Cole, Min-Kuang Lee, Rachel Pitt, Christopher Ruis, Eszter Balla, Tania Crucitti, Michael Ewens, Candela Fernandez-Naval, Anna Grankvist, Malcolm Guiver, Chris R Kenyon, Rafil Khairullin, Ranmini Kularatne, Maider Arando, Barbara J Molini, Andrey Obukhov, Emma E Page, Fruzsina Petrovay, Cornelis Rietmeijer, Dominic Rowley, Sandy Shokoples, Erasmus Smit, Emma L Sweeney, George Taiaroa, Jaime H Vera, Christine Wennerås, David M Whiley, Deborah Ann Williamson, Gwenda Hughes, Prenilla Naidu, Magnus Unemo, Mel Krajden, Sheila A Lukehart, Muhammad G Morshed, Helen Fifer, Nicholas R Thomson
Global phylogeny of Treponema pallidum lineages reveals recent expansion and spread of contemporary syphilis. Nature microbiology 6 (12) (2021)
Hao Chung The, Ladaporn Bodhidatta, Duy Thanh Pham, Carl J Mason, Tuyen Ha Thanh, Phat Voong Vinh, Paul Turner, Sopheak Hem, David A B Dance, Paul N Newton, Rattanaphone Phetsouvanh, Viengmon Davong, Guy E Thwaites, Nicholas R Thomson, Stephen Baker, Maia A Rabaa
Evolutionary histories and antimicrobial resistance in Shigella flexneri and Shigella sonnei in Southeast Asia. Communications biology 4 (1) (2021)
Jane Hawkey, Kalani Paranagama, Kate S Baker, Rebecca J Bengtsson, François-Xavier Weill, Nicholas R Thomson, Stephen Baker, Louise Cerdeira, Zamin Iqbal, Martin Hunt, Danielle J Ingle, Timothy J Dallman, Claire Jenkins, Deborah Ann Williamson, Kathryn E Holt
Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei. Nature communications 12 (1) (2021)
Lauren A Cowley, Mokibul Hassan Afrad, Sadia Isfat Ara Rahman, Md Mahfuz Al Mamun, Taylor Chin, Ayesha Mahmud, Mohammed Ziaur Rahman, Mallick Masum Billah, Manjur Hossain Khan, Sharmin Sultana, Tilovatul Khondaker, Stephen Baker, Nandita Banik, Ahmed Nawsher Alam, Kaiissar Mannoor, Sayera Banu, Anir Chowdhury, Meerjady Sabrina Flora, Nicholas R Thomson, Caroline O Buckee, Firdausi Qadri, Tahmina Shirin
Genomics, social media and mobile phone data enable mapping of SARS-CoV-2 lineages to inform health policy in Bangladesh. Nature microbiology 6 (10) (2021)
Matthew J Dorman, Daryl Domman, Tomás Javier Poklepovich, Charlotte Tolley, Gisella Zolezzi, Leanne Kane, María Rosa Viñas, Marcela Panagópulo, Miriam Moroni, Norma Binsztein, María Inés Caffer, Simon Clare, Gordon Dougan, George P C Salmond, Julian Parkhill, Josefina Campos, Nicholas R Thomson
Genomics of the Argentinian cholera epidemic elucidate the contrasting dynamics of epidemic and endemic Vibrio cholerae. Nature communications 11 (1) (2020)
Satheesh Nair, Maria Fookes, Craig Corton, Nicholas R Thomson, John Wain, Gemma C Langridge
Genetic Markers in S. Paratyphi C Reveal Primary Adaptation to Pigs. Microorganisms 8 (5) (2020)
Catherine H Mercer, Soazig Clifton, Gillian Prior, Robert W Aldridge, Christopher Bonell, Andrew J Copas, Nigel Field, Jo Gibbs, Wendy G Macdowall, Kirstin Rebecca Mitchell, Clare Tanton, Nicholas R Thomson, Magnus Unemo, Pam Sonnenberg
Collecting and exploiting data to understand a nation's sexual health needs: Implications for the British National Surveys of Sexual Attitudes and Lifestyles (Natsal). Sexually transmitted infections 95 (3) (2019)
Matthew J Dorman, Daryl Domman, Muhammad Ikhtear Uddin, Salma Sharmin, Mokibul Hassan Afrad, Yasmin Ara Begum, Firdausi Qadri, Nicholas R Thomson
High quality reference genomes for toxigenic and non-toxigenic Vibrio cholerae serogroup O139. Scientific reports 9 (1) (2019)
Daryl Domman, Marie-Laure Quilici, Matthew J Dorman, Elisabeth Njampeko, Ankur Mutreja, Alison E Mather, Gabriella Delgado, Rosario Morales-Espinosa, Patrick A D Grimont, Marcial Leonardo Lizarraga-Partida, Christiane Bouchier, David M Aanensen, Pablo Kuri-Morales, Cheryl L Tarr, Gordon Dougan, Julian Parkhill, Josefina Campos, Alejandro Cravioto, François-Xavier Weill, Nicholas R Thomson
Integrated view of Vibrio cholerae in the Americas. Science (New York, N.Y.) 358 (6364) (2018)
Stephen Baker, Nicholas R Thomson, François-Xavier Weill, Kathryn E Holt
Genomic insights into the emergence and spread of antimicrobial-resistant bacterial pathogens. Science (New York, N.Y.) 360 (6390) (2018)
François-Xavier Weill, Daryl Domman, Elisabeth Njampeko, Cheryl L Tarr, Jean Rauzier, Nizar Fawal, Karen H Keddy, Henrik Salje, Sandra Moore, Asish K Mukhopadhyay, Raymond Bercion, Francisco J Luquero, Antoinette Ngandjio, Mireille Dosso, Elena Monakhova, Benoit Garin, Christiane Bouchier, Carlo Pazzani, Ankur Mutreja, Roland Grunow, Fati Sidikou, Laurence Bonte, Sébastien Breurec, Maria Damian, Berthe-Marie Njanpop-Lafourcade, Guillaume Sapriel, Anne-Laure Page, Monzer Hamze, Myriam Henkens, Goutam Chowdhury, Martin Mengel, Jean-Louis Koeck, Jean-Michel Fournier, Gordon Dougan, Patrick A D Grimont, Julian Parkhill, Kathryn E Holt, Renaud Piarroux, Thandavarayan Ramamurthy, Marie-Laure Quilici, Nicholas R Thomson
Genomic history of the seventh pandemic of cholera in Africa. Science (New York, N.Y.) 358 (6364) (2018)

Nicholas R Thomson.css-eqlu8i{font-size:small;padding-left:4px;} (Nick Thomson, Nicholas Thomson)

Publication Activity (10 Years)

Top Topics

Top Venues

Nicholas R Thomson (Nick Thomson, Nicholas Thomson)