Nicholas J Provart (Nicholas Provart, N J Provart)

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 44

Top Venues

The Plant cell

The Plant journal : for cell and molecular biology

Nature communications

Plant physiology

University of Toronto

University of Toronto (MSC)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Toronto

Canada

Professor :: Cell and Systems Biology

University of Toronto

Canada

Associate Professor :: Cell and Systems Biology

University of Toronto

Canada

Assistant Professor :: Cell and Systems Biology

Torrey Mesa Research Institute of Syngenta Ltd.

United States

Bioinformatics Scientist :: RNA Dynamics

PlantTec Biotechnologie GmbH

Germany

Research Scientist

Education History

University of Toronto

Canada

MSC :: Botany

University of Toronto

Canada

BSC

Publications

Chunjie Fan, Mingjie Lv, Bingshan Zeng, Qiang He, Xiaoping Wang, Meng-Zhu Lu, Bobin Liu, Jun Liu, Eddi Esteban, Asher Pasha, Nicholas J Provart, Huan Wang, Jin Zhang
Profiling of the gene expression and alternative splicing landscapes of Eucalyptus grandis. Plant, cell & environment 47 (4) (2024)
Martin Kovacik, Anna Nowicka, Jana Zwyrtková, Beáta Strejčková, Isaia Vardanega, Eddi Esteban, Asher Pasha, Kateřina Kaduchová, Maryna Krautsova, Marie Červenková, Jan Šafář, Nicholas J Provart, Rüdiger G W Simon, Ales Pecinka
The transcriptome landscape of developing barley seeds. The Plant cell 36 (7) (2024)
Chunjie Fan, Mingjie Lv, Bingshan Zeng, Qiang He, Xiaoping Wang, Meng-Zhu Lu, Bobin Liu, Jun Liu, Eddi Esteban, Asher Pasha, Nicholas J Provart, Huan Wang, Jin Zhang
Profiling of the gene expression and alternative splicing landscapes of Eucalyptus grandis. Plant, cell & environment (2024)
Martin Kovacik, Anna Nowicka, Jana Zwyrtková, Beáta Strejčková, Isaia Vardanega, Eddi Esteban, Asher Pasha, Kateřina Kaduchová, Maryna Krautsova, Marie Červenková, Jan Šafář, Nicholas J Provart, Rüdiger G W Simon, Ales Pecinka
The transcriptome landscape of developing barley seeds. The Plant cell 36 (7) (2024)
Shankar Pahari, Neha Vaid, Raju Y Soolanayakanahally, Sateesh Kagale, Asher Pasha, Eddi Esteban, Nicholas J Provart, Jarvis A Stobbs, Miranda Vu, Debora Meira, Chithra Karunakaran, Praveen Boda, Mothukapalli K Prasannakumar, Alur Nagaraja, Ashwani Kumar Jain
Nutri-cereal tissue-specific transcriptome atlas during development: Functional integration of gene expression to identify mineral uptake pathways in little millet (Panicum sumatrense). The Plant journal : for cell and molecular biology (2024)
Martin Kovacik, Anna Nowicka, Jana Zwyrtková, Beáta Strejčková, Isaia Vardanega, Eddi Esteban, Asher Pasha, Kateřina Kaduchová, Maryna Krautsova, Marie Červenková, Jan Šafář, Nicholas J Provart, Rüdiger G W Simon, Ales Pecinka
The transcriptome landscape of developing barley seeds. The Plant cell 36 (7) (2024)
Martin Kovacik, Anna Nowicka, Jana Zwyrtková, Beáta Strejčková, Isaia Vardanega, Eddi Esteban, Asher Pasha, Kateřina Kaduchová, Maryna Krautsova, Marie Červenková, Jan Šafář, Nicholas J Provart, Rüdiger G W Simon, Ales Pecinka
The transcriptome landscape of developing barley seeds. The Plant cell (2024)
Shankar Pahari, Neha Vaid, Raju Y Soolanayakanahally, Sateesh Kagale, Asher Pasha, Eddi Esteban, Nicholas J Provart, Jarvis A Stobbs, Miranda Vu, Debora Meira, Chithra Karunakaran, Praveen Boda, Mothukapalli K Prasannakumar, Alur Nagaraja, Ashwani Kumar Jain
Nutri-cereal tissue-specific transcriptome atlas during development: Functional integration of gene expression to identify mineral uptake pathways in little millet (Panicum sumatrense). The Plant journal : for cell and molecular biology 119 (1) (2024)
Chunjie Fan, Mingjie Lv, Bingshan Zeng, Qiang He, Xiaoping Wang, Meng-Zhu Lu, Bobin Liu, Jun Liu, Eddi Esteban, Asher Pasha, Nicholas J Provart, Huan Wang, Jin Zhang
Profiling of the gene expression and alternative splicing landscapes of Eucalyptus grandis. Plant, cell & environment 47 (4) (2024)
Tae-Wuk Kim, Chan Ho Park, Chuan-Chih Hsu, Yeong-Woo Kim, Yeong-Woo Ko, Zhenzhen Zhang, Jia-Ying Zhu, Yu-Chun Hsiao, Tess C Branon, Krista Kaasik, Evan V Saldivar, Kevin Li, Asher Pasha, Nicholas J Provart, Alma L Burlingame, Shou-Ling Xu, Alice Y Ting, Zhi-Yong Wang
Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. The Plant cell 35 (3) (2023)
Tae-Wuk Kim, Chan Ho Park, Chuan-Chih Hsu, Yeong-Woo Kim, Yeong-Woo Ko, Zhenzhen Zhang, Jia-Ying Zhu, Yu-Chun Hsiao, Tess C Branon, Krista Kaasik, Evan V Saldivar, Kevin Li, Asher Pasha, Nicholas J Provart, Alma L Burlingame, Shou-Ling Xu, Alice Y Ting, Zhi-Yong Wang
Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. The Plant cell (2023)
Elizabeth H Mahood, Alexandra A Bennett, Karyn Komatsu, Lars H Kruse, Vincent Lau, Maryam Rahmati Ishka, Yulin Jiang, Armando Bravo, Katherine B Louie, Benjamin P Bowen, Maria J Harrison, Nicholas J Provart, Olena K Vatamaniuk, Gaurav D Moghe
Information theory and machine learning illuminate large-scale metabolomic responses of Brachypodium distachyon to environmental change. The Plant journal : for cell and molecular biology (2023)
Qiao Wen Tan, Peng Ken Lim, Zhong Chen, Asher Pasha, Nicholas J Provart, Marius Arend, Zoran Nikoloski, Marek Mutwil
Cross-stress gene expression atlas of Marchantia polymorpha reveals the hierarchy and regulatory principles of abiotic stress responses. Nature communications 14 (1) (2023)
Tae-Wuk Kim, Chan Ho Park, Chuan-Chih Hsu, Yeong-Woo Kim, Yeong-Woo Ko, Zhenzhen Zhang, Jia-Ying Zhu, Yu-Chun Hsiao, Tess C Branon, Krista Kaasik, Evan V Saldivar, Kevin Li, Asher Pasha, Nicholas J Provart, Alma L Burlingame, Shou-Ling Xu, Alice Y Ting, Zhi-Yong Wang
Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. The Plant cell (2023)
Elizabeth H Mahood, Alexandra A Bennett, Karyn Komatsu, Lars H Kruse, Vincent Lau, Maryam Rahmati Ishka, Yulin Jiang, Armando Bravo, Katherine Louie, Benjamin P Bowen, Maria J Harrison, Nicholas J Provart, Olena K Vatamaniuk, Gaurav D Moghe
Information theory and machine learning illuminate large-scale metabolomic responses of Brachypodium distachyon to environmental change. The Plant journal : for cell and molecular biology (2023)
Qiao Wen Tan, Peng Ken Lim, Zhong Chen, Asher Pasha, Nicholas J Provart, Marius Arend, Zoran Nikoloski, Marek Mutwil
Cross-stress gene expression atlas of Marchantia polymorpha reveals the hierarchy and regulatory principles of abiotic stress responses. Nature communications 14 (1) (2023)
Qiao Wen Tan, Peng Ken Lim, Zhong Chen, Asher Pasha, Nicholas J Provart, Marius Arend, Zoran Nikoloski, Marek Mutwil
Cross-stress gene expression atlas of Marchantia polymorpha reveals the hierarchy and regulatory principles of abiotic stress responses. Nature communications 14 (1) (2023)
Yunfei Jiang, Amidou N'Diaye, Chu Shin Koh, Teagen D Quilichini, Arun S K Shunmugam, Morgan W Kirzinger, David Konkin, Yasmina Bekkaoui, Ehsan Sari, Asher Pasha, Eddi Esteban, Nicholas J Provart, James D Higgins, Kevin Rozwadowski, Andrew G Sharpe, Curtis J Pozniak, Sateesh Kagale
The coordinated regulation of early meiotic stages is dominated by non-coding RNAs and stage-specific transcription in wheat. The Plant journal : for cell and molecular biology (2023)
Letitia Da Ros, Venkatesh Bollina, Raju Y Soolanayakanahally, Shankar Pahari, Raed Elferjani, Manoj Kulkarni, Neha Vaid, Eddy Risseuw, Dustin Cram, Asher Pasha, Eddi Esteban, David Konkin, Nicholas J Provart, Eiji Nambara, Sateesh Kagale
Multi-omics atlas of combinatorial abiotic stress responses in wheat. The Plant journal : for cell and molecular biology (2023)
Valentín Luna-García, Judith Jazmin Bernal Gallardo, Martin Rethoret-Pasty, Asher Pasha, Nicholas J Provart, Stefan De Folter
A high-resolution gene expression map of the medial and lateral domains of the gynoecium of Arabidopsis. Plant physiology (2023)
Qiao Wen Tan, Peng Ken Lim, Zhong Chen, Asher Pasha, Nicholas J Provart, Marius Arend, Zoran Nikoloski, Marek Mutwil
Cross-stress gene expression atlas of Marchantia polymorpha reveals the hierarchy and regulatory principles of abiotic stress responses. Nature communications 14 (1) (2023)
Yunfei Jiang, Amidou N'Diaye, Chu Shin Koh, Teagen D Quilichini, Arun S K Shunmugam, Morgan W Kirzinger, David Konkin, Yasmina Bekkaoui, Ehsan Sari, Asher Pasha, Eddi Esteban, Nicholas J Provart, James D Higgins, Kevin Rozwadowski, Andrew G Sharpe, Curtis J Pozniak, Sateesh Kagale
The coordinated regulation of early meiotic stages is dominated by non-coding RNAs and stage-specific transcription in wheat. The Plant journal : for cell and molecular biology (2023)
Selena L Rice, Elena Lazarus, Christopher Anderton, Kenneth Birnbaum, Jennifer Brophy, Benjamin J Cole, Diane Dickel, David Ehrhardt, Noah Fahlgren, Margaret Frank, Elizabeth S Haswell, Shao-Shan Carol Huang, Samuel Leiboff, Marc Libault, Marisa S Otegui, Nicholas J Provart, Richard Glen Uhrig, Seung Yon Rhee, null null
First Plant Cell Atlas symposium report. Plant direct 6 (6) (2022)
Noah Fahlgren, Muskan Kapoor, Galabina Yordanova, Irene Papatheodorou, Jamie Waese, Benjamin J Cole, Peter Harrison, Doreen H Ware, Timothy Tickle, Benedict Paten, Tony Burdett, Christine G Elsik, Christopher K Tuggle, Nicholas J Provart
Toward a Data Infrastructure for the Plant Cell Atlas. Plant physiology (2022)
null null, Suryatapa Ghosh Jha, Alexander T Borowsky, Benjamin J Cole, Noah Fahlgren, Andrew D Farmer, Shao-Shan Carol Huang, Purva Karia, Marc Libault, Nicholas J Provart, Selena L Rice, Maite Saura-Sanchez, Pinky Agarwal, Amir H Ahkami, Christopher R Anderton, Steven P Briggs, Jennifer A N Brophy, Peter Denolf, Luigi F Di Costanzo, Moises Exposito-Alonso, Stefania Giacomello, Fabio Gomez Cano, Kerstin Kaufmann, Dae Kwan Ko, Sagar Kumar, Andrey Victorovich Malkovskiy, Naomi Nakayama, Toshihiro Obata, Marisa S Otegui, Gergo Palfalvi, Elsa-Herminia Quezada, Rajveer Singh, Richard Glen Uhrig, Jamie Waese, Klaas J van Wijk, R Clay Wright, David W Ehrhardt, Kenneth D Birnbaum, Seung Yon Rhee
Vision, challenges and opportunities for a Plant Cell Atlas. eLife 10 (2021)
Zhiguo Shen, Wenying Li, Yanli Li, Meilan Liu, Heping Cao, Nicholas J Provart, Xin Ding, Meng Sun, Zhenghui Tang, Changping Yue, Muhammad Abdullah, Deyi Yuan, Lin Zhang
The red flower wintersweet genome provides insights into the evolution of magnoliids and the molecular mechanism for tepal color development. The Plant journal : for cell and molecular biology (2021)
Peng Gao, Teagen D Quilichini, Hui Yang, Qiang Li, Kirby T Nilsen, Li Qin, Vivijan Babic, Li Liu, Dustin Cram, Asher Pasha, Eddi Esteban, Janet Condie, Christine Sidebottom, Yan Zhang, Yi Huang, Wentao Zhang, Pankaj Bhowmik, Leon V Kochian, David J F Konkin, Yangdou Wei, Nicholas J Provart, Sateesh Kagale, Mark A Smith, Nii Patterson, C Stewart Gillmor, Raju Datla, Daoquan Xiang
Evolutionary divergence in embryo and seed coat development of U's Triangle Brassica species illustrated by a spatiotemporal transcriptome atlas. The New phytologist 233 (1) (2021)
Alex Cantó-Pastor, G Alex Mason, Siobhán M Brady, Nicholas J Provart
Arabidopsis bioinformatics: tools and strategies. The Plant journal : for cell and molecular biology (2021)
Cheka Kehelpannala, Thusitha W T Rupasinghe, Asher Pasha, Eddi Esteban, Thomas Hennessy, David Bradley, Berit Ebert, Nicholas J Provart, Ute Roessner
An Arabidopsis lipid map reveals differences between tissues and dynamic changes throughout development. The Plant journal : for cell and molecular biology 107 (1) (2021)
Michael Kanaris, Jimmy Poulin, Dea Shahinas, Daniel Johnson, Valerie M Crowley, Geoffrey Fucile, Nicholas J Provart, Dinesh Christendat
Elevated tyrosine results in the cytosolic retention of 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase in Arabidopsis thaliana. The Plant journal : for cell and molecular biology (2021)
Nicholas J Provart, Siobhán M Brady, Geraint Parry, Robert J Schmitz, Christine Queitsch, Dario Bonetta, Jamie Waese, Korbinian Schneeberger, Ann E Loraine
Anno genominis XX: 20 years of Arabidopsis genomics. The Plant cell 33 (4) (2021)
Camilla Ferrari, Devendra Shivhare, Bjoern Oest Hansen, Asher Pasha, Eddi Esteban, Nicholas J Provart, Friedrich Kragler, Alisdair Robert Fernie, Takayuki Tohge, Marek Mutwil
Expression Atlas of Selaginella moellendorffii Provides Insights into the Evolution of Vasculature, Secondary Metabolism, and Roots. The Plant cell 32 (4) (2020)
Asher Pasha, Shabari Subramaniam, Alan M Cleary, Xingguo Chen, Tanya Z Berardini, Andrew D Farmer, Christopher D Town, Nicholas J Provart
Araport Lives: An Updated Framework for Arabidopsis Bioinformatics. The Plant cell 32 (9) (2020)
Charlotte Rich-Griffin, Ruth Eichmann, Marco U Reitz, Sophie Hermann, Katherine Woolley-Allen, Paul E Brown, Kate Wiwatdirekkul, Eddi Esteban, Asher Pasha, Karl-Heinz Kogel, Nicholas J Provart, Sascha Ott, Patrick Schäfer
Regulation of Cell Type-Specific Immunity Networks in Arabidopsis Roots. The Plant cell 32 (9) (2020)
Nicolas Max Doll, Jérémy Just, Véronique Brunaud, José Caïus, Aurélie Grimault, Nathalie Depège-Fargeix, Eddi Esteban, Asher Pasha, Nicholas J Provart, Gwyneth C Ingram, Peter M Rogowsky, Thomas Widiez
Transcriptomics at Maize Embryo/Endosperm Interfaces Identifies a Transcriptionally Distinct Endosperm Subdomain Adjacent to the Embryo Scutellum. The Plant cell 32 (4) (2020)
Fei Yi, Wei Gu, Jian Chen, Ning Song, Xiang Gao, Xiangbo Zhang, Yingsi Zhou, Xuxu Ma, Weibin Song, Haiming Zhao, Eddi Esteban, Asher Pasha, Nicholas J Provart, Jinsheng Lai
High Temporal-Resolution Transcriptome Landscape of Early Maize Seed Development. The Plant cell 31 (5) (2019)
Shaowei Dong, Vincent Lau, Richard Song, Matthew Ierullo, Eddi Esteban, Yingzhou Wu, Teeratham Sivieng, Hardeep Nahal, Allison Gaudinier, Asher Pasha, Rose Oughtred, Kara J Dolinski, Mike Tyers, Siobhán M Brady, Ruth Grene, Björn Usadel, Nicholas J Provart
Proteome-wide, Structure-Based Prediction of Protein-Protein Interactions/New Molecular Interactions Viewer. Plant physiology 179 (4) (2019)
Caihuan Tian, Ying Wang, Hao-Peng Yu, Jun He, Jin Wang, Bihai Shi, Qingwei Du, Nicholas J Provart, Elliot M Meyerowitz, Yuling Jiao
A gene expression map of shoot domains reveals regulatory mechanisms. Nature communications 10 (1) (2019)
Daoquan Xiang, Teagen D Quilichini, Ziying Liu, Peng Gao, Youlian Pan, Qiang Li, Kirby T Nilsen, Prakash Venglat, Eddi Esteban, Asher Pasha, Yejun Wang, Rui Wen, Zhongjuan Zhang, Zhaodong Hao, Edwin Wang, Yangdou Wei, Richard D Cuthbert, Leon V Kochian, Andrew G Sharpe, Nicholas J Provart, Dolf Weijers, C Stewart Gillmor, Curtis J Pozniak, Raju Datla
The Transcriptional Landscape of Polyploid Wheats and Their Diploid Ancestors during Embryogenesis and Grain Development. The Plant cell 31 (12) (2019)
G Adam Mott, Elwira Smakowska-Luzan, Asher Pasha, Katarzyna Parys, Timothy C Howton, Jana Neuhold, Anita Lehner, Karin Grünwald, Peggy Stolt-Bergner, Nicholas J Provart, M Shahid Mukhtar, Darrell Desveaux, David S Guttman, Youssef Belkhadir
Map of physical interactions between extracellular domains of Arabidopsis leucine-rich repeat receptor kinases. Scientific data 6 (2019)
Alexander Sullivan, Priyank K Purohit, Nowlan H Freese, Asher Pasha, Eddi Esteban, Jamie Waese, Alison Wu, Michelle Chen, Chih Y Chin, Richard Song, Sneha R Watharkar, Agnes P Chan, Vivek Krishnakumar, Matthew W Vaughn, Chris Town, Ann E Loraine, Nicholas J Provart
An 'eFP-Seq Browser' for visualizing and exploring RNA sequencing data. The Plant journal : for cell and molecular biology 100 (3) (2019)
Joanna Friesner, Sarah M Assmann, Ruth Bastow, Julia Bailey-Serres, Jim L Beynon, Volker P Brendel, Carol Robin Buell, Alexander K Bucksch, Wolfgang Busch, Taku Demura, José R Dinneny, Colleen J Doherty, Andrea L Eveland, Pascal Falter-Braun, Malia A Gehan, Michael Gonzales, Erich Grotewold, Rodrigo A Gutierrez, Ute Krämer, Gabriel Krouk, Shisong Ma, R J Cody Markelz, Molly Megraw, Blake C Meyers, James A H Murray, Nicholas J Provart, Seung Yon Rhee, Roger Smith, Edgar P Spalding, Crispin Taylor, Tracy K Teal, Keiko U Torii, Chris Town, Matthew W Vaughn, Richard David Vierstra, Doreen Ware, Olivia Wilkins, Cranos Williams, Siobhán M Brady
The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology. Plant physiology 175 (4) (2018)
Ricardo Humberto Ramirez-Gonzalez, Philippa Borrill, Daniel Lang, Sophie A Harrington, Jemima F Brinton, L Venturini, M Davey, John Jacobs, Frédéric van Ex, Asher Pasha, Y Khedikar, S J Robinson, A T Cory, Tobin Florio, Lorenzo Concia, C Juery, Henk-jan Schoonbeek, Burkhard Steuernagel, D Xiang, Christopher J Ridout, B Chalhoub, Klaus F X Mayer, M Benhamed, D Latrasse, A Bendahmane, null null, Brande B H Wulff, R Appels, V Tiwari, R Datla, Frédéric Choulet, Curtis J Pozniak, Nicholas J Provart, Andrew G Sharpe, Etienne Paux, Manuel Spannagl, A Bräutigam, Cristobal Uauy
The transcriptional landscape of polyploid wheat. Science (New York, N.Y.) 361 (6403) (2018)
Jamie Waese, Jim Fan, Asher Pasha, Hans Yu, Geoffrey Fucile, Ruian Shi, Matthew Cumming, Lawrence A Kelley, Michael J E Sternberg, Vivek Krishnakumar, Erik Ferlanti, Jason R Miller, Chris Town, Wolfgang Stuerzlinger, Nicholas J Provart
ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology. The Plant cell 29 (8) (2017)

Nicholas J Provart.css-eqlu8i{font-size:small;padding-left:4px;} (Nicholas Provart, N J Provart)

Publication Activity (10 Years)

Top Topics

Top Venues

Nicholas J Provart (Nicholas Provart, N J Provart)