Kota Kasahara

Scopus Author ID Researcher Name Resolver ID ORCID

Publication Activity (10 Years)

Years Active: 2018-2023
Publications (10 Years): 15

Top Topics

Arabidopsis Thaliana

Molecular Dynamics

Top Venues

Journal of chemical theory and computation

The journal of physical chemistry. B

This page only lists publications with an associated author ORCID identifier.

Publications

Shin-Ichiro Yamaguchi, Qilin Xie, Fumiya Ito, Kazuki Terao, Yoshinobu Kato, Miki Kuroiwa, Satoshi Omori, Hideo Taniura, Kengo Kinoshita, Takuya Takahashi, Shinya Toyokuni, Kota Kasahara, Masafumi Nakayama
Carbon nanotube recognition by human Siglec-14 provokes inflammation. Nature nanotechnology (2023)
Qilin Xie, Kota Kasahara, Junichi Higo, Takuya Takahashi
Molecular Mechanisms of Functional Modulation of Transcriptional Coactivator PC4 via Phosphorylation on Its Intrinsically Disordered Region. ACS omega 8 (16) (2023)
Qilin Xie, Kota Kasahara, Junichi Higo, Takuya Takahashi
Molecular Mechanisms of Functional Modulation of Transcriptional Coactivator PC4 via Phosphorylation on Its Intrinsically Disordered Region. ACS omega 8 (16) (2023)
Toru Sengoku, Masaaki Shiina, Kae Suzuki, Keisuke Hamada, Ko Sato, Akiko Uchiyama, Shunsuke Kobayashi, Asako Oguni, Hayato Itaya, Kota Kasahara, Hirotomo Moriwaki, Chiduru Watanabe, Teruki Honma, Chikako Okada, Shiho Baba, Tsutomu Ohta, Hozumi Motohashi, Masayuki Yamamoto, Kazuhiro Ogata
Structural basis of transcription regulation by CNC family transcription factor, Nrf2. Nucleic acids research (2022)
Shun Sakuraba, Qilin Xie, Kota Kasahara, Junichi Iwakiri, Hidetoshi Kono
Extended ensemble simulations of a SARS-CoV-2 nsp1-5'-UTR complex. PLoS computational biology 18 (1) (2022)
Tomomi Ukawa, Fumihiko Banno, Toshiki Ishikawa, Kota Kasahara, Yuuta Nishina, Rika Inoue, Keigo Tsujii, Masatoshi Yamaguchi, Takuya Takahashi, Yoichiro Fukao, Maki Kawai-Yamada, Minoru Nagano
Sphingolipids with 2-hydroxy fatty acids aid in plasma membrane nanodomain organization and oxidative burst. Plant physiology 189 (2) (2022)
Hayato Itaya, Kota Kasahara, Qilin Xie, Yoshiaki Yano, Katsumi Matsuzaki, Takuya Takahashi
All-Atom Molecular Dynamics Elucidating Molecular Mechanisms of Single-Transmembrane Model Peptide Dimerization in a Lipid Bilayer. ACS omega 6 (17) (2021)
Masatake Sugita, Masataka Hamano, Kota Kasahara, Takeshi Kikuchi, Fumio Hirata
New Protocol for Predicting the Ligand-Binding Site and Mode Based on the 3D-RISM/KH Theory. Journal of chemical theory and computation 16 (4) (2020)
Junichi Higo, Takeshi Kawabata, Ayumi Kusaka, Kota Kasahara, Narutoshi Kamiya, Ikuo Fukuda, Kentaro Mori, Yutaka Hata, Yoshifumi Fukunishi, Haruki Nakamura
Molecular Interaction Mechanism of a 14-3-3 Protein with a Phosphorylated Peptide Elucidated by Enhanced Conformational Sampling. Journal of chemical information and modeling 60 (10) (2020)
Tomonori Hayami, Junichi Higo, Haruki Nakamura, Kota Kasahara
Multidimensional virtual-system coupled canonical molecular dynamics to compute free-energy landscapes of peptide multimer assembly. Journal of computational chemistry 40 (28) (2019)
Shinji Iida, Takeshi Kawabata, Kota Kasahara, Haruki Nakamura, Junichi Higo
Multimodal Structural Distribution of the p53 C-Terminal Domain upon Binding to S100B via a Generalized Ensemble Method: From Disorder to Extradisorder. Journal of chemical theory and computation 15 (4) (2019)
Naoki Ogasawara, Kota Kasahara, Ryosuke Iwai, Takuya Takahashi
Unfolding of α-helical 20-residue poly-glutamic acid analyzed by multiple runs of canonical molecular dynamics simulations. PeerJ 6 (2018)
Kota Kasahara, Shun Sakuraba, Ikuo Fukuda
Enhanced Sampling of Molecular Dynamics Simulations of a Polyalanine Octapeptide: Effects of the Periodic Boundary Conditions on Peptide Conformation. The journal of physical chemistry. B 122 (9) (2018)
Junichi Higo, Kota Kasahara, Haruki Nakamura
Multi-dimensional virtual system introduced to enhance canonical sampling. The Journal of chemical physics 147 (13) (2018)
Kota Kasahara, Shintaro Minami, Yasunori Aizawa
Characteristics of interactions at protein segments without non-local intramolecular contacts in the Protein Data Bank. PloS one 13 (12) (2018)