Narutoshi Kamiya

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 23

Top Venues

Journal of chemical information and modeling

Communications biology

Journal of chemical theory and computation

The journal of physical chemistry. B

University of Hyogo

Tokyo Institute of Technology (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Hyogo Jul 01 2016

Japan

Specially Appointed Professor :: Graduate School of Simulation Studies

Education History

Tokyo Institute of Technology Apr 01 1994 - Mar 26 1997

Japan

PHD :: Dept. of Biomolecular Engineering

Publications

Gert-Jan Bekker, Kanji Oshima, Mitsugu Araki, Yasushi Okuno, Narutoshi Kamiya
Binding Mechanism between Platelet Glycoprotein and Cyclic Peptide Elucidated by McMD-Based Dynamic Docking. Journal of chemical information and modeling 64 (10) (2024)
Gert-Jan Bekker, Yoshifumi Fukunishi, Junichi Higo, Narutoshi Kamiya
Binding Mechanism of Riboswitch to Natural Ligand Elucidated by McMD-Based Dynamic Docking Simulations. ACS omega 9 (3) (2024)
Gert-Jan Bekker, Kanji Oshima, Mitsugu Araki, Yasushi Okuno, Narutoshi Kamiya
Binding Mechanism between Platelet Glycoprotein and Cyclic Peptide Elucidated by McMD-Based Dynamic Docking. Journal of chemical information and modeling (2024)
Gert-Jan Bekker, Yoshifumi Fukunishi, Junichi Higo, Narutoshi Kamiya
Binding Mechanism of Riboswitch to Natural Ligand Elucidated by McMD-Based Dynamic Docking Simulations. ACS omega 9 (3) (2024)
Gert-Jan Bekker, Kanji Oshima, Mitsugu Araki, Yasushi Okuno, Narutoshi Kamiya
Binding Mechanism between Platelet Glycoprotein and Cyclic Peptide Elucidated by McMD-Based Dynamic Docking. Journal of chemical information and modeling 64 (10) (2024)
Gert-Jan Bekker, Mitsugu Araki, Kanji Oshima, Yasushi Okuno, Narutoshi Kamiya
Mutual induced-fit mechanism drives binding between intrinsically disordered Bim and cryptic binding site of Bcl-xL. Communications biology 6 (1) (2023)
Gert-Jan Bekker, Nobutaka Numoto, Maki Kawasaki, Takahiro Hayashi, Saaya Yabuno, Yuko Kozono, Takeyuki Shimizu, Haruo Kozono, Nobutoshi Ito, Masayuki Oda, Narutoshi Kamiya
Elucidation of binding mechanism, affinity and complex structure between mWT1 tumor-associated antigen peptide and HLA-A*24:02. Protein science : a publication of the Protein Society (2023)
Gert-Jan Bekker, Mitsugu Araki, Kanji Oshima, Yasushi Okuno, Narutoshi Kamiya
Mutual induced-fit mechanism drives binding between intrinsically disordered Bim and cryptic binding site of Bcl-xL. Communications biology 6 (1) (2023)
Ryo Kanada, Atsushi Tokuhisa, Yusuke Nagasaka, Shingo Okuno, Koichiro Amemiya, Shuntaro Chiba, Gert-Jan Bekker, Narutoshi Kamiya, Koichiro Kato, Yasushi Okuno
Enhanced Coarse-Grained Molecular Dynamics Simulation with a Smoothed Hybrid Potential Using a Neural Network Model. Journal of chemical theory and computation 20 (1) (2023)
Gert-Jan Bekker, Mitsugu Araki, Kanji Oshima, Yasushi Okuno, Narutoshi Kamiya
Mutual induced-fit mechanism drives binding between intrinsically disordered Bim and cryptic binding site of Bcl-xL. Communications biology 6 (1) (2023)
Ryo Kanada, Atsushi Tokuhisa, Yusuke Nagasaka, Shingo Okuno, Koichiro Amemiya, Shuntaro Chiba, Gert-Jan Bekker, Narutoshi Kamiya, Koichiro Kato, Yasushi Okuno
Enhanced Coarse-Grained Molecular Dynamics Simulation with a Smoothed Hybrid Potential Using a Neural Network Model. Journal of chemical theory and computation (2023)
Gert-Jan Bekker, Mitsugu Araki, Kanji Oshima, Yasushi Okuno, Narutoshi Kamiya
Mutual induced-fit mechanism drives binding between intrinsically disordered Bim and cryptic binding site of Bcl-xL. Communications biology 6 (1) (2023)
Gert-Jan Bekker, Narutoshi Kamiya
Advancing the field of computational drug design using multicanonical molecular dynamics-based dynamic docking. Biophysical reviews 14 (6) (2022)
Gert-Jan Bekker, Narutoshi Kamiya
Advancing the field of computational drug design using multicanonical molecular dynamics-based dynamic docking. Biophysical reviews 14 (6) (2022)
Gert-Jan Bekker, Mitsugu Araki, Kanji Oshima, Yasushi Okuno, Narutoshi Kamiya
Accurate Binding Configuration Prediction of a G-Protein-Coupled Receptor to Its Antagonist Using Multicanonical Molecular Dynamics-Based Dynamic Docking. Journal of chemical information and modeling 61 (10) (2021)
Kei Moritsugu, Koh Takeuchi, Narutoshi Kamiya, Junichi Higo, Isao Yasumatsu, Yoshifumi Fukunishi, Ikuo Fukuda
Flexibility and Cell Permeability of Cyclic Ras-Inhibitor Peptides Revealed by the Coupled Nosé-Hoover Equation. Journal of chemical information and modeling 61 (4) (2021)
Gert-Jan Bekker, Narutoshi Kamiya
N-Terminal-Driven Binding Mechanism of an Antigen Peptide to Human Leukocyte Antigen-A*2402 Elucidated by Multicanonical Molecular Dynamic-Based Dynamic Docking and Path Sampling Simulations. The journal of physical chemistry. B (2021)
Atsushi Tokuhisa, Ryo Kanada, Shuntaro Chiba, Kei Terayama, Yuta Isaka, Biao Ma, Narutoshi Kamiya, Yasushi Okuno
Coarse-Grained Diffraction Template Matching Model to Retrieve Multiconformational Models for Biomolecule Structures from Noisy Diffraction Patterns. Journal of chemical information and modeling 60 (6) (2020)
Junichi Higo, Takeshi Kawabata, Ayumi Kusaka, Kota Kasahara, Narutoshi Kamiya, Ikuo Fukuda, Kentaro Mori, Yutaka Hata, Yoshifumi Fukunishi, Haruki Nakamura
Molecular Interaction Mechanism of a 14-3-3 Protein with a Phosphorylated Peptide Elucidated by Enhanced Conformational Sampling. Journal of chemical information and modeling 60 (10) (2020)
Gert-Jan Bekker, Mitsugu Araki, Kanji Oshima, Yasushi Okuno, Narutoshi Kamiya
Dynamic Docking of a Medium-Sized Molecule to Its Receptor by Multicanonical MD Simulations. The journal of physical chemistry. B 123 (11) (2019)
Ryoko Kawai, Mitsugu Araki, Masashi Yoshimura, Narutoshi Kamiya, Masahiro Ono, Hideo Saji, Yasushi Okuno
Core Binding Site of a Thioflavin-T-Derived Imaging Probe on Amyloid β Fibrils Predicted by Computational Methods. ACS chemical neuroscience 9 (5) (2018)
Gert-Jan Bekker, Benson Ma, Narutoshi Kamiya
Thermal stability of single-domain antibodies estimated by molecular dynamics simulations. Protein science : a publication of the Protein Society 28 (2) (2018)
Gert-Jan Bekker, Narutoshi Kamiya, Mitsugu Araki, Ikuo Fukuda, Yasushi Okuno, Haruki Nakamura
Accurate Prediction of Complex Structure and Affinity for a Flexible Protein Receptor and Its Inhibitor. Journal of chemical theory and computation 13 (6) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Narutoshi Kamiya