Lili Niu

ORCID

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 12

Top Venues

Nature biotechnology

Nature communications

Nature medicine

Diabetes, obesity & metabolism

University of Copenhagen

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Copenhagen Sep 01 2016

Denmark

PhD student :: Novo Nordisk Foundation Center for Protein Research

Publications

Henry E Webel, Lili Niu, Annelaura Bach Nielsen, Marie Locard-Paulet, Matthias Mann, Lars Juhl Jensen, Simon Rasmussen
Imputation of label-free quantitative mass spectrometry-based proteomics data using self-supervised deep learning. Nature communications 15 (1) (2024)
Henry E Webel, Lili Niu, Annelaura Bach Nielsen, Marie Locard-Paulet, Matthias Mann, Lars Juhl Jensen, Simon Rasmussen
Imputation of label-free quantitative mass spectrometry-based proteomics data using self-supervised deep learning. Nature communications 15 (1) (2024)
Henry E Webel, Lili Niu, Annelaura Bach Nielsen, Marie Locard-Paulet, Matthias Mann, Lars Juhl Jensen, Simon Rasmussen
Imputation of label-free quantitative mass spectrometry-based proteomics data using self-supervised deep learning. Nature communications 15 (1) (2024)
Rosa Lundbye Allesøe, Agnete Troen Lundgaard, Ricardo Hernández Medina, Alejandro Aguayo-Orozco, Joachim Johansen, Jakob Nybo Nissen, Caroline Brorsson, Gianluca Mazzoni, Lili Niu, Jorge Hernansanz Biel, Valentas Brasas, Henry Webel, Michael Eriksen Benros, Anders Gorm Pedersen, Piotr Jaroslaw Chmura, Ulrik Plesner Jacobsen, Andrea Mari, Robert Wilhelm Koivula, Anubha Mahajan, Ana Viñuela, Juan Fernandez Tajes, Sapna Sharma, Mark Haid, Mun-Gwan Hong, Petra B Musholt, Federico De Masi, Josef Vogt, Helle Krogh Pedersen, Valborg Gudmundsdottir, Angus Jones, Gwen Kennedy, Jimmy Bell, E Louise Thomas, Gary S Frost, Henrik Thomsen, Elizaveta Hansen, Tue Haldor Hansen, Henrik Vestergaard, Mirthe Muilwijk, Marieke T Blom, Leen M 't Hart, Francois Pattou, Violeta Raverdy, Soren Brage, Tarja Kokkola, Alison Heggie, Donna McEvoy, Miranda Mourby, Jane Kaye, Andrew T Hattersley, Timothy McDonald, Martin Ridderstråle, Mark Walker, Ian Forgie, Giuseppe N Giordano, Imre Pavo, Hartmut Ruetten, Oluf Pedersen, Torben Hansen, Emmanouil Dermitzakis, Paul W Franks, Jochen M Schwenk, Jerzy Adamski, Mark I McCarthy, Ewan Pearson, Karina Banasik, Simon Rasmussen, Soren Brunak, null null
Discovery of drug-omics associations in type 2 diabetes with generative deep-learning models. Nature biotechnology 41 (3) (2023)
Rosa Lundbye Allesøe, Agnete Troen Lundgaard, Ricardo Hernández Medina, Alejandro Aguayo-Orozco, Joachim Johansen, Jakob Nybo Nissen, Caroline Brorsson, Gianluca Mazzoni, Lili Niu, Jorge Hernansanz Biel, Valentas Brasas, Henry Webel, Michael Eriksen Benros, Anders Gorm Pedersen, Piotr Jaroslaw Chmura, Ulrik Plesner Jacobsen, Andrea Mari, Robert Wilhelm Koivula, Anubha Mahajan, Ana Viñuela, Juan Fernandez Tajes, Sapna Sharma, Mark Haid, Mun-Gwan Hong, Petra B Musholt, Federico De Masi, Josef Vogt, Helle Krogh Pedersen, Valborg Gudmundsdottir, Angus Jones, Gwen Kennedy, Jimmy Bell, E Louise Thomas, Gary S Frost, Henrik Thomsen, Elizaveta Hansen, Tue Haldor Hansen, Henrik Vestergaard, Mirthe Muilwijk, Marieke T Blom, Leen M 't Hart, Francois Pattou, Violeta Raverdy, Soren Brage, Tarja Kokkola, Alison Heggie, Donna McEvoy, Miranda Mourby, Jane Kaye, Andrew T Hattersley, Timothy McDonald, Martin Ridderstråle, Mark Walker, Ian Forgie, Giuseppe N Giordano, Imre Pavo, Hartmut Ruetten, Oluf Pedersen, Torben Hansen, Emmanouil Dermitzakis, Paul W Franks, Jochen M Schwenk, Jerzy Adamski, Mark I McCarthy, Ewan Pearson, Karina Banasik, Simon Rasmussen, Soren Brunak, null null
Discovery of drug-omics associations in type 2 diabetes with generative deep-learning models. Nature biotechnology (2023)
Rosa Lundbye Allesøe, Agnete Troen Lundgaard, Ricardo Hernández Medina, Alejandro Aguayo-Orozco, Joachim Johansen, Jakob Nybo Nissen, Caroline Brorsson, Gianluca Mazzoni, Lili Niu, Jorge Hernansanz Biel, Valentas Brasas, Henry Webel, Michael Eriksen Benros, Anders Gorm Pedersen, Piotr Jaroslaw Chmura, Ulrik Plesner Jacobsen, Andrea Mari, Robert Wilhelm Koivula, Anubha Mahajan, Ana Viñuela, Juan Fernandez Tajes, Sapna Sharma, Mark Haid, Mun-Gwan Hong, Petra B Musholt, Federico De Masi, Josef Vogt, Helle Krogh Pedersen, Valborg Gudmundsdottir, Angus Jones, Gwen Kennedy, Jimmy Bell, E Louise Thomas, Gary S Frost, Henrik Thomsen, Elizaveta Hansen, Tue Haldor Hansen, Henrik Vestergaard, Mirthe Muilwijk, Marieke T Blom, Leen M 't Hart, Francois Pattou, Violeta Raverdy, Soren Brage, Tarja Kokkola, Alison Heggie, Donna McEvoy, Miranda Mourby, Jane Kaye, Andrew T Hattersley, Timothy McDonald, Martin Ridderstråle, Mark Walker, Ian Forgie, Giuseppe N Giordano, Imre Pavo, Hartmut Ruetten, Oluf Pedersen, Torben Hansen, Emmanouil Dermitzakis, Paul W Franks, Jochen M Schwenk, Jerzy Adamski, Mark I McCarthy, Ewan Pearson, Karina Banasik, Simon Rasmussen, Soren Brunak, null null
Discovery of drug-omics associations in type 2 diabetes with generative deep-learning models. Nature biotechnology (2023)
Rosa Lundbye Allesøe, Agnete Troen Lundgaard, Ricardo Hernández Medina, Alejandro Aguayo-Orozco, Joachim Johansen, Jakob Nybo Nissen, Caroline Brorsson, Gianluca Mazzoni, Lili Niu, Jorge Hernansanz Biel, Cristina Leal Rodríguez, Valentas Brasas, Henry Webel, Michael Eriksen Benros, Anders Gorm Pedersen, Piotr Jaroslaw Chmura, Ulrik Plesner Jacobsen, Andrea Mari, Robert Wilhelm Koivula, Anubha Mahajan, Ana Viñuela, Juan Fernandez Tajes, Sapna Sharma, Mark Haid, Mun-Gwan Hong, Petra B Musholt, Federico De Masi, Josef Vogt, Helle Krogh Pedersen, Valborg Gudmundsdottir, Angus Jones, Gwen Kennedy, Jimmy Bell, E Louise Thomas, Gary S Frost, Henrik Thomsen, Elizaveta Hansen, Tue Haldor Hansen, Henrik Vestergaard, Mirthe Muilwijk, Marieke T Blom, Leen M 't Hart, Francois Pattou, Violeta Raverdy, Soren Brage, Tarja Kokkola, Alison Heggie, Donna McEvoy, Miranda Mourby, Jane Kaye, Andrew T Hattersley, Timothy McDonald, Martin Ridderstråle, Mark Walker, Ian Forgie, Giuseppe N Giordano, Imre Pavo, Hartmut Ruetten, Oluf Pedersen, Torben Hansen, Emmanouil Dermitzakis, Paul W Franks, Jochen M Schwenk, Jerzy Adamski, Mark I McCarthy, Ewan Pearson, Karina Banasik, Simon Rasmussen, Soren Brunak, null null
Author Correction: Discovery of drug-omics associations in type 2 diabetes with generative deep-learning models. Nature biotechnology (2023)
Rosa Lundbye Allesøe, Agnete Troen Lundgaard, Ricardo Hernández Medina, Alejandro Aguayo-Orozco, Joachim Johansen, Jakob Nybo Nissen, Caroline Brorsson, Gianluca Mazzoni, Lili Niu, Jorge Hernansanz Biel, Valentas Brasas, Henry Webel, Michael Eriksen Benros, Anders Gorm Pedersen, Piotr Jaroslaw Chmura, Ulrik Plesner Jacobsen, Andrea Mari, Robert Wilhelm Koivula, Anubha Mahajan, Ana Viñuela, Juan Fernandez Tajes, Sapna Sharma, Mark Haid, Mun-Gwan Hong, Petra B Musholt, Federico De Masi, Josef Vogt, Helle Krogh Pedersen, Valborg Gudmundsdottir, Angus Jones, Gwen Kennedy, Jimmy Bell, E Louise Thomas, Gary S Frost, Henrik Thomsen, Elizaveta Hansen, Tue Haldor Hansen, Henrik Vestergaard, Mirthe Muilwijk, Marieke T Blom, Leen M 't Hart, Francois Pattou, Violeta Raverdy, Soren Brage, Tarja Kokkola, Alison Heggie, Donna McEvoy, Miranda Mourby, Jane Kaye, Andrew T Hattersley, Timothy McDonald, Martin Ridderstråle, Mark Walker, Ian Forgie, Giuseppe N Giordano, Imre Pavo, Hartmut Ruetten, Oluf Pedersen, Torben Hansen, Emmanouil Dermitzakis, Paul W Franks, Jochen M Schwenk, Jerzy Adamski, Mark I McCarthy, Ewan Pearson, Karina Banasik, Simon Rasmussen, Soren Brunak, null null
Discovery of drug-omics associations in type 2 diabetes with generative deep-learning models. Nature biotechnology 41 (3) (2023)
Rosa Lundbye Allesøe, Agnete Troen Lundgaard, Ricardo Hernández Medina, Alejandro Aguayo-Orozco, Joachim Johansen, Jakob Nybo Nissen, Caroline Brorsson, Gianluca Mazzoni, Lili Niu, Jorge Hernansanz Biel, Valentas Brasas, Henry Webel, Michael Eriksen Benros, Anders Gorm Pedersen, Piotr Jaroslaw Chmura, Ulrik Plesner Jacobsen, Andrea Mari, Robert Wilhelm Koivula, Anubha Mahajan, Ana Viñuela, Juan Fernandez Tajes, Sapna Sharma, Mark Haid, Mun-Gwan Hong, Petra B Musholt, Federico De Masi, Josef Vogt, Helle Krogh Pedersen, Valborg Gudmundsdottir, Angus Jones, Gwen Kennedy, Jimmy Bell, E Louise Thomas, Gary S Frost, Henrik Thomsen, Elizaveta Hansen, Tue Haldor Hansen, Henrik Vestergaard, Mirthe Muilwijk, Marieke T Blom, Leen M 't Hart, Francois Pattou, Violeta Raverdy, Soren Brage, Tarja Kokkola, Alison Heggie, Donna McEvoy, Miranda Mourby, Jane Kaye, Andrew T Hattersley, Timothy McDonald, Martin Ridderstråle, Mark Walker, Ian Forgie, Giuseppe N Giordano, Imre Pavo, Hartmut Ruetten, Oluf Pedersen, Torben Hansen, Emmanouil Dermitzakis, Paul W Franks, Jochen M Schwenk, Jerzy Adamski, Mark I McCarthy, Ewan Pearson, Karina Banasik, Simon Rasmussen, Soren Brunak, null null
Discovery of drug-omics associations in type 2 diabetes with generative deep-learning models. Nature biotechnology 41 (3) (2023)
Lili Niu, Maja Sofie Thiele, Philipp E Geyer, Ditlev Nytoft Rasmussen, Henry Emanuel Webel, Alberto Santos, Rajat Gupta, Florian Meier, Maximillian T Strauss, Maria Kjærgaard, Katrine Lindvig, Suganya Jacobsen, Simon Rasmussen, Torben Hansen, Aleksander Krag, Matthias Mann
Noninvasive proteomic biomarkers for alcohol-related liver disease. Nature medicine 28 (6) (2022)
Lili Niu, Philipp E Geyer, Rajat Gupta, Alberto Santos, Florian Meier, Sophia Doll, Nicolai J Wewer Albrechtsen, Sabine Klein, Cristina Ortiz, Frank E Uschner, Robert Schierwagen, Jonel Trebicka, Matthias Mann
Dynamic human liver proteome atlas reveals functional insights into disease pathways. Molecular systems biology 18 (5) (2022)
Stephan Sachs, Lili Niu, Philipp E Geyer, Sigrid Jall, Maximilian Kleinert, Annette Feuchtinger, Kerstin Stemmer, Markus Brielmeier, Brian Finan, Richard D DiMarchi, Matthias H Tschöp, Nicolai J Wewer Albrechtsen, Matthias Mann, Timo Dirk Müller, Susanna M Hofmann
Plasma proteome profiles treatment efficacy of incretin dual agonism in diet-induced obese female and male mice. Diabetes, obesity & metabolism 23 (1) (2020)

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Publication Activity (10 Years)

Top Topics

Top Venues

Lili Niu