Joachim Johansen

ORCID

Publication Activity (10 Years)

Years Active: 2021-2023
Publications (10 Years): 11

Top Venues

Nature biotechnology

Communications biology

Nature microbiology

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Rosa Lundbye Allesøe, Agnete Troen Lundgaard, Ricardo Hernández Medina, Alejandro Aguayo-Orozco, Joachim Johansen, Jakob Nybo Nissen, Caroline Brorsson, Gianluca Mazzoni, Lili Niu, Jorge Hernansanz Biel, Valentas Brasas, Henry Webel, Michael Eriksen Benros, Anders Gorm Pedersen, Piotr Jaroslaw Chmura, Ulrik Plesner Jacobsen, Andrea Mari, Robert Wilhelm Koivula, Anubha Mahajan, Ana Viñuela, Juan Fernandez Tajes, Sapna Sharma, Mark Haid, Mun-Gwan Hong, Petra B Musholt, Federico De Masi, Josef Vogt, Helle Krogh Pedersen, Valborg Gudmundsdottir, Angus Jones, Gwen Kennedy, Jimmy Bell, E Louise Thomas, Gary S Frost, Henrik Thomsen, Elizaveta Hansen, Tue Haldor Hansen, Henrik Vestergaard, Mirthe Muilwijk, Marieke T Blom, Leen M 't Hart, Francois Pattou, Violeta Raverdy, Soren Brage, Tarja Kokkola, Alison Heggie, Donna McEvoy, Miranda Mourby, Jane Kaye, Andrew T Hattersley, Timothy McDonald, Martin Ridderstråle, Mark Walker, Ian Forgie, Giuseppe N Giordano, Imre Pavo, Hartmut Ruetten, Oluf Pedersen, Torben Hansen, Emmanouil Dermitzakis, Paul W Franks, Jochen M Schwenk, Jerzy Adamski, Mark I McCarthy, Ewan Pearson, Karina Banasik, Simon Rasmussen, Soren Brunak, null null
Discovery of drug-omics associations in type 2 diabetes with generative deep-learning models. Nature biotechnology 41 (3) (2023)
Rosa Lundbye Allesøe, Agnete Troen Lundgaard, Ricardo Hernández Medina, Alejandro Aguayo-Orozco, Joachim Johansen, Jakob Nybo Nissen, Caroline Brorsson, Gianluca Mazzoni, Lili Niu, Jorge Hernansanz Biel, Valentas Brasas, Henry Webel, Michael Eriksen Benros, Anders Gorm Pedersen, Piotr Jaroslaw Chmura, Ulrik Plesner Jacobsen, Andrea Mari, Robert Wilhelm Koivula, Anubha Mahajan, Ana Viñuela, Juan Fernandez Tajes, Sapna Sharma, Mark Haid, Mun-Gwan Hong, Petra B Musholt, Federico De Masi, Josef Vogt, Helle Krogh Pedersen, Valborg Gudmundsdottir, Angus Jones, Gwen Kennedy, Jimmy Bell, E Louise Thomas, Gary S Frost, Henrik Thomsen, Elizaveta Hansen, Tue Haldor Hansen, Henrik Vestergaard, Mirthe Muilwijk, Marieke T Blom, Leen M 't Hart, Francois Pattou, Violeta Raverdy, Soren Brage, Tarja Kokkola, Alison Heggie, Donna McEvoy, Miranda Mourby, Jane Kaye, Andrew T Hattersley, Timothy McDonald, Martin Ridderstråle, Mark Walker, Ian Forgie, Giuseppe N Giordano, Imre Pavo, Hartmut Ruetten, Oluf Pedersen, Torben Hansen, Emmanouil Dermitzakis, Paul W Franks, Jochen M Schwenk, Jerzy Adamski, Mark I McCarthy, Ewan Pearson, Karina Banasik, Simon Rasmussen, Soren Brunak, null null
Discovery of drug-omics associations in type 2 diabetes with generative deep-learning models. Nature biotechnology (2023)
Pau Piera Líndez, Joachim Johansen, Svetlana Kutuzova, Arnor Ingi Sigurdsson, Jakob Nybo Nissen, Simon Rasmussen
Adversarial and variational autoencoders improve metagenomic binning. Communications biology 6 (1) (2023)
Rosa Lundbye Allesøe, Agnete Troen Lundgaard, Ricardo Hernández Medina, Alejandro Aguayo-Orozco, Joachim Johansen, Jakob Nybo Nissen, Caroline Brorsson, Gianluca Mazzoni, Lili Niu, Jorge Hernansanz Biel, Valentas Brasas, Henry Webel, Michael Eriksen Benros, Anders Gorm Pedersen, Piotr Jaroslaw Chmura, Ulrik Plesner Jacobsen, Andrea Mari, Robert Wilhelm Koivula, Anubha Mahajan, Ana Viñuela, Juan Fernandez Tajes, Sapna Sharma, Mark Haid, Mun-Gwan Hong, Petra B Musholt, Federico De Masi, Josef Vogt, Helle Krogh Pedersen, Valborg Gudmundsdottir, Angus Jones, Gwen Kennedy, Jimmy Bell, E Louise Thomas, Gary S Frost, Henrik Thomsen, Elizaveta Hansen, Tue Haldor Hansen, Henrik Vestergaard, Mirthe Muilwijk, Marieke T Blom, Leen M 't Hart, Francois Pattou, Violeta Raverdy, Soren Brage, Tarja Kokkola, Alison Heggie, Donna McEvoy, Miranda Mourby, Jane Kaye, Andrew T Hattersley, Timothy McDonald, Martin Ridderstråle, Mark Walker, Ian Forgie, Giuseppe N Giordano, Imre Pavo, Hartmut Ruetten, Oluf Pedersen, Torben Hansen, Emmanouil Dermitzakis, Paul W Franks, Jochen M Schwenk, Jerzy Adamski, Mark I McCarthy, Ewan Pearson, Karina Banasik, Simon Rasmussen, Soren Brunak, null null
Discovery of drug-omics associations in type 2 diabetes with generative deep-learning models. Nature biotechnology (2023)
Rosa Lundbye Allesøe, Agnete Troen Lundgaard, Ricardo Hernández Medina, Alejandro Aguayo-Orozco, Joachim Johansen, Jakob Nybo Nissen, Caroline Brorsson, Gianluca Mazzoni, Lili Niu, Jorge Hernansanz Biel, Cristina Leal Rodríguez, Valentas Brasas, Henry Webel, Michael Eriksen Benros, Anders Gorm Pedersen, Piotr Jaroslaw Chmura, Ulrik Plesner Jacobsen, Andrea Mari, Robert Wilhelm Koivula, Anubha Mahajan, Ana Viñuela, Juan Fernandez Tajes, Sapna Sharma, Mark Haid, Mun-Gwan Hong, Petra B Musholt, Federico De Masi, Josef Vogt, Helle Krogh Pedersen, Valborg Gudmundsdottir, Angus Jones, Gwen Kennedy, Jimmy Bell, E Louise Thomas, Gary S Frost, Henrik Thomsen, Elizaveta Hansen, Tue Haldor Hansen, Henrik Vestergaard, Mirthe Muilwijk, Marieke T Blom, Leen M 't Hart, Francois Pattou, Violeta Raverdy, Soren Brage, Tarja Kokkola, Alison Heggie, Donna McEvoy, Miranda Mourby, Jane Kaye, Andrew T Hattersley, Timothy McDonald, Martin Ridderstråle, Mark Walker, Ian Forgie, Giuseppe N Giordano, Imre Pavo, Hartmut Ruetten, Oluf Pedersen, Torben Hansen, Emmanouil Dermitzakis, Paul W Franks, Jochen M Schwenk, Jerzy Adamski, Mark I McCarthy, Ewan Pearson, Karina Banasik, Simon Rasmussen, Soren Brunak, null null
Author Correction: Discovery of drug-omics associations in type 2 diabetes with generative deep-learning models. Nature biotechnology (2023)
Marie Louise Jespersen, Patrick Munk, Joachim Johansen, Rolf Sommer Kaas, Henry Webel, Håkan Vigre, Henrik Bjørn Nielsen, Simon Rasmussen, Frank Møller Aarestrup
Global within-species phylogenetics of sewage microbes suggest that local adaptation shapes geographical bacterial clustering. Communications biology 6 (1) (2023)
Joachim Johansen, Koji Atarashi, Yasumichi Arai, Nobuyoshi Hirose, Søren Johannes Sørensen, Tommi Vatanen, Olli H Laitinen, Kenya Honda, Ramnik J Xavier, Simon Rasmussen, Damian Rafal Plichta
Centenarians have a diverse gut virome with the potential to modulate metabolism and promote healthy lifespan. Nature microbiology (2023)
Rosa Lundbye Allesøe, Agnete Troen Lundgaard, Ricardo Hernández Medina, Alejandro Aguayo-Orozco, Joachim Johansen, Jakob Nybo Nissen, Caroline Brorsson, Gianluca Mazzoni, Lili Niu, Jorge Hernansanz Biel, Valentas Brasas, Henry Webel, Michael Eriksen Benros, Anders Gorm Pedersen, Piotr Jaroslaw Chmura, Ulrik Plesner Jacobsen, Andrea Mari, Robert Wilhelm Koivula, Anubha Mahajan, Ana Viñuela, Juan Fernandez Tajes, Sapna Sharma, Mark Haid, Mun-Gwan Hong, Petra B Musholt, Federico De Masi, Josef Vogt, Helle Krogh Pedersen, Valborg Gudmundsdottir, Angus Jones, Gwen Kennedy, Jimmy Bell, E Louise Thomas, Gary S Frost, Henrik Thomsen, Elizaveta Hansen, Tue Haldor Hansen, Henrik Vestergaard, Mirthe Muilwijk, Marieke T Blom, Leen M 't Hart, Francois Pattou, Violeta Raverdy, Soren Brage, Tarja Kokkola, Alison Heggie, Donna McEvoy, Miranda Mourby, Jane Kaye, Andrew T Hattersley, Timothy McDonald, Martin Ridderstråle, Mark Walker, Ian Forgie, Giuseppe N Giordano, Imre Pavo, Hartmut Ruetten, Oluf Pedersen, Torben Hansen, Emmanouil Dermitzakis, Paul W Franks, Jochen M Schwenk, Jerzy Adamski, Mark I McCarthy, Ewan Pearson, Karina Banasik, Simon Rasmussen, Soren Brunak, null null
Discovery of drug-omics associations in type 2 diabetes with generative deep-learning models. Nature biotechnology 41 (3) (2023)
Rosa Lundbye Allesøe, Agnete Troen Lundgaard, Ricardo Hernández Medina, Alejandro Aguayo-Orozco, Joachim Johansen, Jakob Nybo Nissen, Caroline Brorsson, Gianluca Mazzoni, Lili Niu, Jorge Hernansanz Biel, Valentas Brasas, Henry Webel, Michael Eriksen Benros, Anders Gorm Pedersen, Piotr Jaroslaw Chmura, Ulrik Plesner Jacobsen, Andrea Mari, Robert Wilhelm Koivula, Anubha Mahajan, Ana Viñuela, Juan Fernandez Tajes, Sapna Sharma, Mark Haid, Mun-Gwan Hong, Petra B Musholt, Federico De Masi, Josef Vogt, Helle Krogh Pedersen, Valborg Gudmundsdottir, Angus Jones, Gwen Kennedy, Jimmy Bell, E Louise Thomas, Gary S Frost, Henrik Thomsen, Elizaveta Hansen, Tue Haldor Hansen, Henrik Vestergaard, Mirthe Muilwijk, Marieke T Blom, Leen M 't Hart, Francois Pattou, Violeta Raverdy, Soren Brage, Tarja Kokkola, Alison Heggie, Donna McEvoy, Miranda Mourby, Jane Kaye, Andrew T Hattersley, Timothy McDonald, Martin Ridderstråle, Mark Walker, Ian Forgie, Giuseppe N Giordano, Imre Pavo, Hartmut Ruetten, Oluf Pedersen, Torben Hansen, Emmanouil Dermitzakis, Paul W Franks, Jochen M Schwenk, Jerzy Adamski, Mark I McCarthy, Ewan Pearson, Karina Banasik, Simon Rasmussen, Soren Brunak, null null
Discovery of drug-omics associations in type 2 diabetes with generative deep-learning models. Nature biotechnology 41 (3) (2023)
Joachim Johansen, Damian Rafal Plichta, Jakob Nybo Nissen, Marie Louise Jespersen, Shiraz A Shah, Ling Deng, Jessica Lasky-Su, Hans Bisgaard, Dennis Sandris Nielsen, Søren Johannes Sørensen, Simon Rasmussen
Genome binning of viral entities from bulk metagenomics data. Nature communications 13 (1) (2022)
Jakob Nybo Nissen, Joachim Johansen, Rosa Lundbye Allesøe, Casper Kaae Sønderby, Jose Juan Almagro Armenteros, Christopher Heje Grønbech, Lars Juhl Jensen, Henrik Bjørn Nielsen, Thomas Nordahl Petersen, Ole Winther, Simon Rasmussen
Improved metagenome binning and assembly using deep variational autoencoders. Nature biotechnology 39 (5) (2021)

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Publication Activity (10 Years)

Top Topics

Top Venues

Joachim Johansen