Lyle A Simmons

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 39

Top Topics

Dna Methylation

Bacillus Subtilis

Top Venues

Nucleic acids research

bioRxiv : the preprint server for biology

This page only lists publications with an associated author ORCID identifier.

Publications

Kelly A Manthei, Lia M Munson, Jayakrishnan Nandakumar, Lyle A Simmons
Structural and biochemical characterization of the mitomycin C repair exonuclease MrfB. bioRxiv : the preprint server for biology (2024)
Nicolas L Fernandez, Lyle A Simmons
Two distinct regulatory systems control pulcherrimin biosynthesis in Bacillus subtilis. PLoS genetics 20 (5) (2024)
Kelly A Manthei, Lia M Munson, Jayakrishnan Nandakumar, Lyle A Simmons
Structural and biochemical characterization of the mitomycin C repair exonuclease MrfB. bioRxiv : the preprint server for biology (2024)
Nicolas L Fernandez, Lyle A Simmons
Two distinct regulatory systems control pulcherrimin biosynthesis in Bacillus subtilis. PLoS genetics 20 (5) (2024)
Kelly A Manthei, Lia M Munson, Jayakrishnan Nandakumar, Lyle A Simmons
Structural and biochemical characterization of the mitomycin C repair exonuclease MrfB. Nucleic acids research (2024)
Nicolas L Fernandez, Lyle A Simmons
Two distinct regulatory systems control pulcherrimin biosynthesis in Bacillus subtilis. PLoS genetics 20 (5) (2024)
Kelly A Manthei, Lia M Munson, Jayakrishnan Nandakumar, Lyle A Simmons
Structural and biochemical characterization of the mitomycin C repair exonuclease MrfB. Nucleic acids research (2024)
Nicolas L Fernandez, Lyle A Simmons
Two distinct regulatory systems control pulcherrimin biosynthesis in Bacillus subtilis. PLoS genetics 20 (5) (2024)
Kelly A Manthei, Lia M Munson, Jayakrishnan Nandakumar, Lyle A Simmons
Structural and biochemical characterization of the mitomycin C repair exonuclease MrfB. bioRxiv : the preprint server for biology (2024)
Kelly A Manthei, Lia M Munson, Jayakrishnan Nandakumar, Lyle A Simmons
Structural and biochemical characterization of the mitomycin C repair exonuclease MrfB. Nucleic acids research 52 (11) (2024)
Kelly A Manthei, Lia M Munson, Jayakrishnan Nandakumar, Lyle A Simmons
Structural and biochemical characterization of the mitomycin C repair exonuclease MrfB. Nucleic acids research (2024)
Kelly A Manthei, Lia M Munson, Jayakrishnan Nandakumar, Lyle A Simmons
Structural and biochemical characterization of the mitomycin C repair exonuclease MrfB. bioRxiv : the preprint server for biology (2024)
Nicolas L Fernandez, Lyle A Simmons
Two distinct regulatory systems control pulcherrimin biosynthesis in Bacillus subtilis. PLoS genetics 20 (5) (2024)
Nicolas L Fernandez, Lyle A Simmons
Two distinct regulatory systems control pulcherrimin biosynthesis in Bacillus subtilis. PLoS genetics 20 (5) (2024)
Kelly A Manthei, Lia M Munson, Jayakrishnan Nandakumar, Lyle A Simmons
Structural and biochemical characterization of the mitomycin C repair exonuclease MrfB. Nucleic acids research 52 (11) (2024)
Nicolas L Fernandez, Lyle A Simmons
Two distinct regulatory systems control pulcherrimin biosynthesis in Bacillus subtilis. PLoS genetics 20 (5) (2024)
Frances Caroline Lowder, Lyle A Simmons
Bacillus subtilis encodes a discrete flap endonuclease that cleaves RNA-DNA hybrids. PLoS genetics 19 (5) (2023)
Jeremy W Schroeder, Rebecca L Hurto, Justin R Randall, Katherine J Wozniak, Taylor A Timko, Taylor M Nye, Jue D Wang, Peter L Freddolino, Lyle A Simmons
RNase H genes cause distinct impacts on RNA:DNA hybrid formation and mutagenesis genome-wide. bioRxiv : the preprint server for biology (2023)
Nicolas L Fernandez, Ziyuan Chen, David E H Fuller, Lieke A van Gijtenbeek, Taylor M Nye, Julie Suzanne Biteen, Lyle A Simmons
DNA Methylation and RNA-DNA Hybrids Regulate the Single-Molecule Localization of a DNA Methyltransferase on the Bacterial Nucleoid. mBio 14 (1) (2023)
Helen C Blaine, Lyle A Simmons, Christina L Stallings
Diverse Mechanisms of Helicase Loading during DNA Replication Initiation in Bacteria. Journal of bacteriology (2023)
Jeremy W Schroeder, Rebecca L Hurto, Justin R Randall, Katherine J Wozniak, Taylor A Timko, Taylor M Nye, Jue D Wang, Peter L Freddolino, Lyle A Simmons
RNase H genes cause distinct impacts on RNA:DNA hybrid formation and mutagenesis genome wide. Science advances 9 (30) (2023)
Frances Caroline Lowder, Lyle A Simmons
Bacillus subtilis encodes a discrete flap endonuclease that cleaves RNA-DNA hybrids. PLoS genetics 19 (5) (2023)
Nicolas L Fernandez, Ziyuan Chen, David E H Fuller, Lieke A van Gijtenbeek, Taylor M Nye, Julie Suzanne Biteen, Lyle A Simmons
DNA Methylation and RNA-DNA Hybrids Regulate the Single-Molecule Localization of a DNA Methyltransferase on the Bacterial Nucleoid. mBio 14 (1) (2023)
Frances Caroline Lowder, Lyle A Simmons
Bacillus subtilis encodes a discrete flap endonuclease that cleaves RNA-DNA hybrids. PLoS genetics 19 (5) (2023)
Frances Caroline Lowder, Lyle A Simmons
Bacillus subtilis encodes a discrete flap endonuclease that cleaves RNA-DNA hybrids. PLoS genetics 19 (5) (2023)
Nicolas L Fernandez, Ziyuan Chen, David E H Fuller, Lieke A van Gijtenbeek, Taylor M Nye, Julie Suzanne Biteen, Lyle A Simmons
DNA Methylation and RNA-DNA Hybrids Regulate the Single-Molecule Localization of a DNA Methyltransferase on the Bacterial Nucleoid. mBio (2023)
Nicolas L Fernandez, Ziyuan Chen, David E H Fuller, Lieke A van Gijtenbeek, Taylor M Nye, Julie Suzanne Biteen, Lyle A Simmons
DNA Methylation and RNA-DNA Hybrids Regulate the Single-Molecule Localization of a DNA Methyltransferase on the Bacterial Nucleoid. mBio 14 (1) (2023)
Katherine J Wozniak, Peter E Burby, Jayakrishnan Nandakumar, Lyle A Simmons
Structure and kinase activity of bacterial cell cycle regulator CcrZ. PLoS genetics 18 (5) (2022)
Lindsay A Matthews, Lyle A Simmons
The Bacillus subtilis PriA Winged Helix Domain Is Critical for Surviving DNA Damage. Journal of bacteriology 204 (3) (2022)
Katherine J Wozniak, Lyle A Simmons
Bacterial DNA excision repair pathways. Nature reviews. Microbiology 20 (8) (2022)
Emily A Masser, Peter E Burby, Wayne D Hawkins, Brooke R Gustafson, Justin S Lenhart, Lyle A Simmons
DNA damage checkpoint activation affects peptidoglycan synthesis and late divisome components in Bacillus subtilis. Molecular microbiology 116 (2) (2021)
Emma K McLean, Justin S Lenhart, Lyle A Simmons
RecA Is Required for the Assembly of RecN into DNA Repair Complexes on the Nucleoid. Journal of bacteriology 203 (20) (2021)
Haley M Amemiya, Thomas J Goss, Taylor M Nye, Rebecca L Hurto, Lyle A Simmons, Peter L Freddolino
Distinct heterochromatin-like domains promote transcriptional memory and silence parasitic genetic elements in bacteria. The EMBO journal 41 (3) (2021)
Lindsay A Matthews, Lyle A Simmons
Regulation of DNA Binding and High-Order Oligomerization of the DnaB Helicase Loader. Journal of bacteriology 202 (21) (2020)
Taylor M Nye, Emma K McLean, Andrew M Burrage, Devon D Dennison, Daniel B Kearns, Lyle A Simmons
RnhP is a plasmid-borne RNase HI that contributes to genome maintenance in the ancestral strain Bacillus subtilis NCIB 3610. Molecular microbiology 115 (1) (2020)
Jeremy W Schroeder, T Sabari Sankar, Jue D Wang, Lyle A Simmons
The roles of replication-transcription conflict in mutagenesis and evolution of genome organization. PLoS genetics 16 (8) (2020)
Peter E Burby, Lyle A Simmons
A bacterial DNA repair pathway specific to a natural antibiotic. Molecular microbiology 111 (2) (2018)
Peter E Burby, Zackary W Simmons, Lyle A Simmons
DdcA antagonizes a bacterial DNA damage checkpoint. Molecular microbiology 111 (1) (2018)
Peter E Burby, Zackary W Simmons, Jeremy W Schroeder, Lyle A Simmons
Discovery of a dual protease mechanism that promotes DNA damage checkpoint recovery. PLoS genetics 14 (7) (2018)