Martin Gruebele (M Gruebele)

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 85

Top Topics

Binding Protein

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

The journal of physical chemistry letters

Biomacromolecules

This page only lists publications with an associated author ORCID identifier.

Publications

Carla Scaletti, Premila P Samuel Russell, Kurt J Hebel, Meredith M Rickard, Mayank Boob, Franz Danksagmüller, Stephen A Taylor, Taras V Pogorelov, Martin Gruebele
Hydrogen bonding heterogeneity correlates with protein folding transition state passage time as revealed by data sonification. Proceedings of the National Academy of Sciences of the United States of America 121 (22) (2024)
Mahima Unnikrishnan, Yuhan Wang, Martin Gruebele, Catherine Jones Murphy
Nanoparticle-assisted tubulin assembly is environment dependent. Proceedings of the National Academy of Sciences of the United States of America 121 (28) (2024)
Yuhan Wang, Mahima Unnikrishnan, Brooke Ramsey, Driss El Andlosy, Alex T Keeley, Catherine Jones Murphy, Martin Gruebele
In-Cell Association of a Bioorthogonal Tubulin. Biomacromolecules (2024)
Premila P Samuel Russell, Andrew K Maytin, Meredith M Rickard, Matthew C Russell, Taras V Pogorelov, Martin Gruebele
Metastable States in the Hinge-Bending Landscape of an Enzyme in an Atomistic Cytoplasm Simulation. The journal of physical chemistry letters 15 (4) (2024)
Yuhan Wang, Mahima Unnikrishnan, Brooke Ramsey, Driss El Andlosy, Alex T Keeley, Catherine Jones Murphy, Martin Gruebele
In-Cell Association of a Bioorthogonal Tubulin. Biomacromolecules 25 (2) (2024)
Mahima Unnikrishnan, Yuhan Wang, Martin Gruebele, Catherine Jones Murphy
Nanoparticle-assisted tubulin assembly is environment dependent. Proceedings of the National Academy of Sciences of the United States of America 121 (28) (2024)
Premila P Samuel Russell, Andrew K Maytin, Meredith M Rickard, Matthew C Russell, Taras V Pogorelov, Martin Gruebele
Metastable States in the Hinge-Bending Landscape of an Enzyme in an Atomistic Cytoplasm Simulation. The journal of physical chemistry letters 15 (4) (2024)
Chenghao Zhang, Sohang Kundu, Nancy Makri, Martin Gruebele, Peter G Wolynes
Quantum information scrambling and chemical reactions. Proceedings of the National Academy of Sciences of the United States of America 121 (15) (2024)
Premila P Samuel Russell, Andrew K Maytin, Meredith M Rickard, Matthew C Russell, Taras V Pogorelov, Martin Gruebele
Metastable States in the Hinge-Bending Landscape of an Enzyme in an Atomistic Cytoplasm Simulation. The journal of physical chemistry letters 15 (4) (2024)
Carla Scaletti, Premila P Samuel Russell, Kurt J Hebel, Meredith M Rickard, Mayank Boob, Franz Danksagmüller, Stephen A Taylor, Taras V Pogorelov, Martin Gruebele
Hydrogen bonding heterogeneity correlates with protein folding transition state passage time as revealed by data sonification. Proceedings of the National Academy of Sciences of the United States of America 121 (22) (2024)
Carla Scaletti, Premila P Samuel Russell, Kurt J Hebel, Meredith M Rickard, Mayank Boob, Franz Danksagmüller, Stephen A Taylor, Taras V Pogorelov, Martin Gruebele
Hydrogen bonding heterogeneity correlates with protein folding transition state passage time as revealed by data sonification. Proceedings of the National Academy of Sciences of the United States of America 121 (22) (2024)
Premila P Samuel Russell, Andrew K Maytin, Meredith M Rickard, Matthew C Russell, Taras V Pogorelov, Martin Gruebele
Metastable States in the Hinge-Bending Landscape of an Enzyme in an Atomistic Cytoplasm Simulation. The journal of physical chemistry letters 15 (4) (2024)
Premila P Samuel Russell, Andrew K Maytin, Meredith M Rickard, Matthew C Russell, Taras V Pogorelov, Martin Gruebele
Metastable States in the Hinge-Bending Landscape of an Enzyme in an Atomistic Cytoplasm Simulation. The journal of physical chemistry letters (2024)
Chenghao Zhang, Sohang Kundu, Nancy Makri, Martin Gruebele, Peter G Wolynes
Quantum information scrambling and chemical reactions. Proceedings of the National Academy of Sciences of the United States of America 121 (15) (2024)
Marcus Jäger, Jeffery W Kelly, Martin Gruebele
Conservation of kinetic stability, but not the unfolding mechanism, between human transthyretin and a transthyretin-related enzyme. Proceedings of the National Academy of Sciences of the United States of America 121 (34) (2024)
Arash Firouzbakht, Austin Haider, Kari Gaalswyk, Sepehr Alaeen, Kingshuk Ghosh, Martin Gruebele
HYPK: A marginally disordered protein sensitive to charge decoration. Proceedings of the National Academy of Sciences of the United States of America 121 (18) (2024)
Chenghao Zhang, Sohang Kundu, Nancy Makri, Martin Gruebele, Peter G Wolynes
Quantum information scrambling and chemical reactions. Proceedings of the National Academy of Sciences of the United States of America 121 (15) (2024)
Chenghao Zhang, Sohang Kundu, Nancy Makri, Martin Gruebele, Peter G Wolynes
Quantum information scrambling and chemical reactions. Proceedings of the National Academy of Sciences of the United States of America 121 (15) (2024)
Mahima Unnikrishnan, Yuhan Wang, Martin Gruebele, Catherine Jones Murphy
Nanoparticle-assisted tubulin assembly is environment dependent. Proceedings of the National Academy of Sciences of the United States of America 121 (28) (2024)
Yuhan Wang, Mahima Unnikrishnan, Brooke Ramsey, Driss El Andlosy, Alex T Keeley, Catherine Jones Murphy, Martin Gruebele
In-Cell Association of a Bioorthogonal Tubulin. Biomacromolecules 25 (2) (2024)
Yuhan Wang, Mahima Unnikrishnan, Brooke Ramsey, Driss El Andlosy, Alex T Keeley, Catherine Jones Murphy, Martin Gruebele
In-Cell Association of a Bioorthogonal Tubulin. Biomacromolecules 25 (2) (2024)
Carla Scaletti, Premila P Samuel Russell, Kurt J Hebel, Meredith M Rickard, Mayank Boob, Franz Danksagmüller, Stephen A Taylor, Taras V Pogorelov, Martin Gruebele
Hydrogen bonding heterogeneity correlates with protein folding transition state passage time as revealed by data sonification. Proceedings of the National Academy of Sciences of the United States of America 121 (22) (2024)
Marcus Jäger, Jeffery W Kelly, Martin Gruebele
Conservation of kinetic stability, but not the unfolding mechanism, between human transthyretin and a transthyretin-related enzyme. Proceedings of the National Academy of Sciences of the United States of America 121 (34) (2024)
Arash Firouzbakht, Austin Haider, Kari Gaalswyk, Sepehr Alaeen, Kingshuk Ghosh, Martin Gruebele
HYPK: A marginally disordered protein sensitive to charge decoration. Proceedings of the National Academy of Sciences of the United States of America 121 (18) (2024)
Marcus Jäger, Jeffery W Kelly, Martin Gruebele
Conservation of kinetic stability, but not the unfolding mechanism, between human transthyretin and a transthyretin-related enzyme. Proceedings of the National Academy of Sciences of the United States of America 121 (34) (2024)
Arash Firouzbakht, Austin Haider, Kari Gaalswyk, Sepehr Alaeen, Kingshuk Ghosh, Martin Gruebele
HYPK: A marginally disordered protein sensitive to charge decoration. Proceedings of the National Academy of Sciences of the United States of America 121 (18) (2024)
Arash Firouzbakht, Austin Haider, Kari Gaalswyk, Sepehr Alaeen, Kingshuk Ghosh, Martin Gruebele
HYPK: A marginally disordered protein sensitive to charge decoration. Proceedings of the National Academy of Sciences of the United States of America 121 (18) (2024)
Marcus Jäger, Jeffery W Kelly, Martin Gruebele
Conservation of kinetic stability, but not the unfolding mechanism, between human transthyretin and a transthyretin-related enzyme. Proceedings of the National Academy of Sciences of the United States of America 121 (34) (2024)
Arash Firouzbakht, Austin Haider, Kari Gaalswyk, Sepehr Alaeen, Kingshuk Ghosh, Martin Gruebele
HYPK: A marginally disordered protein sensitive to charge decoration. Proceedings of the National Academy of Sciences of the United States of America 121 (18) (2024)
Chenghao Zhang, Martin Gruebele, David E Logan, Peter G Wolynes
Surface crossing and energy flow in many-dimensional quantum systems. Proceedings of the National Academy of Sciences of the United States of America 120 (9) (2023)
Indrajit Srivastava, Benjamin Lew, Yuhan Wang, Steven Blair, Mebin Babu George, Brianna Scheid Hajek, Sushant Bangru, Subhendu Pandit, Ziwen Wang, Jamie Ludwig, Kristen Flatt, Martin Gruebele, Shuming Nie, Viktor Gruev
Cell-Membrane Coated Nanoparticles for Tumor Delineation and Qualitative Estimation of Cancer Biomarkers at Single Wavelength Excitation in Murine and Phantom Models. ACS nano 17 (9) (2023)
Chenghao Zhang, Martin Gruebele, David E Logan, Peter G Wolynes
Surface crossing and energy flow in many-dimensional quantum systems. Proceedings of the National Academy of Sciences of the United States of America 120 (9) (2023)
Indrajit Srivastava, Benjamin Lew, Yuhan Wang, Steven Blair, Mebin Babu George, Brianna Scheid Hajek, Sushant Bangru, Subhendu Pandit, Ziwen Wang, Jamie Ludwig, Kristen Flatt, Martin Gruebele, Shuming Nie, Viktor Gruev
Cell-Membrane Coated Nanoparticles for Tumor Delineation and Qualitative Estimation of Cancer Biomarkers at Single Wavelength Excitation in Murine and Phantom Models. ACS nano (2023)
Indrajit Srivastava, Benjamin Lew, Yuhan Wang, Steven Blair, Mebin Babu George, Brianna Scheid Hajek, Sushant Bangru, Subhendu Pandit, Ziwen Wang, Jamie Ludwig, Kristen Flatt, Martin Gruebele, Shuming Nie, Viktor Gruev
Cell-Membrane Coated Nanoparticles for Tumor Delineation and Qualitative Estimation of Cancer Biomarkers at Single Wavelength Excitation in Murine and Phantom Models. ACS nano 17 (9) (2023)
Indrajit Srivastava, Benjamin Lew, Yuhan Wang, Steven Blair, Mebin Babu George, Brianna Scheid Hajek, Sushant Bangru, Subhendu Pandit, Ziwen Wang, Jamie Ludwig, Kristen Flatt, Martin Gruebele, Shuming Nie, Viktor Gruev
Cell-Membrane Coated Nanoparticles for Tumor Delineation and Qualitative Estimation of Cancer Biomarkers at Single Wavelength Excitation in Murine and Phantom Models. ACS nano 17 (9) (2023)
Roger Chang, Martin Gruebele, Deborah E Leckband
Protein Folding Stability and Kinetics in Alginate Hydrogels. Biomacromolecules (2023)
Peter G Wolynes, Martin Gruebele
Quantum scrambling across an energy barrier. Proceedings of the National Academy of Sciences of the United States of America 120 (52) (2023)
Peter G Wolynes, Martin Gruebele
Quantum scrambling across an energy barrier. Proceedings of the National Academy of Sciences of the United States of America 120 (52) (2023)
Prabhat Tripathi, Behzad Mehrafrooz, Aleksei Aksimentiev, Sophie E Jackson, Martin Gruebele, Meni Wanunu
A Marcus-Type Inverted Region in the Translocation Kinetics of a Knotted Protein. The journal of physical chemistry letters (2023)
Peter G Wolynes, Martin Gruebele
Quantum scrambling across an energy barrier. Proceedings of the National Academy of Sciences of the United States of America 120 (52) (2023)
Chenghao Zhang, Martin Gruebele, David E Logan, Peter G Wolynes
Surface crossing and energy flow in many-dimensional quantum systems. Proceedings of the National Academy of Sciences of the United States of America 120 (9) (2023)
Zhengyi Bian, Alison Wallum, Arshad Mehmood, Eric Gomez, Ziwen Wang, Subhendu Pandit, Shuming Nie, Stephan Link, Benjamin G Levine, Martin Gruebele
Properties of Carbon Dots versus Small Molecules from "Bottom-up" Synthesis. ACS nano (2023)
Chenghao Zhang, Martin Gruebele, David E Logan, Peter G Wolynes
Surface crossing and energy flow in many-dimensional quantum systems. Proceedings of the National Academy of Sciences of the United States of America 120 (9) (2023)
Peter G Wolynes, Martin Gruebele
Quantum scrambling across an energy barrier. Proceedings of the National Academy of Sciences of the United States of America 120 (52) (2023)
Premila P Samuel Russell, Meredith M Rickard, Mayank Boob, Martin Gruebele, Taras V Pogorelov
In silico protein dynamics in the human cytoplasm: partial folding, misfolding, fold switching, and non-native interactions. Protein science : a publication of the Protein Society (2023)
Niklas Gross, Christopher T Kuhs, Behnaz Ostovar, Wei-Yi Chiang, Kelly S Wilson, Tanner S Volek, Zachary M Faitz, Claire C Carlin, Jennifer A Dionne, Martin T Zanni, Martin Gruebele, Sean T Roberts, Stephan Link, Christy F Landes
Progress and Prospects in Optical Ultrafast Microscopy in the Visible Spectral Region: Transient Absorption and Two-Dimensional Microscopy. The journal of physical chemistry. C, Nanomaterials and interfaces 127 (30) (2023)
Aniket Ravan, Ruopei Feng, Martin Gruebele, Yann R Chemla
Rapid automated 3-D pose estimation of larval zebrafish using a physical model-trained neural network. PLoS computational biology 19 (10) (2023)
Prabhat Tripathi, Arash Firouzbakht, Martin Gruebele, Meni Wanunu
Threading single proteins through pores to compare their energy landscapes. Proceedings of the National Academy of Sciences of the United States of America 119 (39) (2022)
Gopika Gopan, Zhaleh Ghaemi, Caitlin M Davis, Martin Gruebele
Spliceosomal SL1 RNA binding to U1-70K: the role of the extended RRM. Nucleic acids research 50 (14) (2022)
Meredith M Rickard, Haolin Luo, Ashley De Lio, Martin Gruebele, Taras V Pogorelov
Impact of the Cellular Environment on Adenosine Triphosphate Conformations. The journal of physical chemistry letters 13 (42) (2022)
Roger Chang, Martin Gruebele, Deborah E Leckband
Protein Stabilization by Alginate Binding and Suppression of Thermal Aggregation. Biomacromolecules 23 (10) (2022)
Prabhat Tripathi, Arash Firouzbakht, Martin Gruebele, Meni Wanunu
Direct Observation of Single-Protein Transition State Passage by Nanopore Ionic Current Jumps. The journal of physical chemistry letters 13 (25) (2022)
Zhaleh Ghaemi, Martin Gruebele, Emad Tajkhorshid
Molecular mechanism of capsid disassembly in hepatitis B virus. Proceedings of the National Academy of Sciences of the United States of America 118 (36) (2022)
Nikolai Kocherginsky, Martin Gruebele
Response to "Comment on 'Thermodiffusion: The physico-chemical mechanics view'" [J. Chem. Phys. 155, 087101 (2021)]. The Journal of chemical physics 155 (8) (2021)
Caitlin M Davis, Martin Gruebele
Cellular Sticking Can Strongly Reduce Complex Binding by Speeding Dissociation. The journal of physical chemistry. B 125 (15) (2021)
Nikolai Kocherginsky, Martin Gruebele
Thermodiffusion: The physico-chemical mechanics view. The Journal of chemical physics 154 (2) (2021)
Mark D Ediger, Martin Gruebele, Vassiliy Lubchenko, Peter G Wolynes
Glass Dynamics Deep in the Energy Landscape. The journal of physical chemistry. B 125 (32) (2021)
Zully Mora-Sierra, Gopika Gopan, Roger Chang, Deborah E Leckband, Martin Gruebele
Stabilization and Kinetics of an Adsorbed Protein Depends on the Poly(N-isopropylacrylamide) Grafting Density. Biomacromolecules 22 (11) (2021)
Martin Gruebele
Protein folding and surface interaction phase diagrams in vitro and in cells. FEBS letters 595 (9) (2021)
Caitlin M Davis, Jonathan Deutsch, Martin Gruebele
An in vitro mimic of in-cell solvation for protein folding studies. Protein science : a publication of the Protein Society 29 (4) (2020)
Zhaleh Ghaemi, Joseph R Peterson, Martin Gruebele, Zaida Luthey-Schulten
An in-silico human cell model reveals the influence of spatial organization on RNA splicing. PLoS computational biology 16 (3) (2020)
Huy A Nguyen, Indrajit Srivastava, Dipanjan Pan, Martin Gruebele
Unraveling the Fluorescence Mechanism of Carbon Dots with Sub-Single-Particle Resolution. ACS nano 14 (5) (2020)
Meredith M Rickard, Y Zhang, Taras V Pogorelov, Martin Gruebele
Crowding, Sticking, and Partial Folding of GTT WW Domain in a Small Cytoplasm Model. The journal of physical chemistry. B 124 (23) (2020)
Drishti Guin, Martin Gruebele
Chaperones Hsc70 and Hsp70 Bind to the Protein PGK Differently inside Living Cells. The journal of physical chemistry. B 124 (18) (2020)
Caitlin M Davis, Martin Gruebele
Cytoskeletal Drugs Modulate Off-Target Protein Folding Landscapes Inside Cells. Biochemistry 59 (28) (2020)
Drishti Guin, Martin Gruebele
Weak Chemical Interactions That Drive Protein Evolution: Crowding, Sticking, and Quinary Structure in Folding and Function. Chemical reviews 119 (18) (2019)
Duc Nguyen, Alison Wallum, Huy A Nguyen, Nhan T Nguyen, Joseph W Lyding, Martin Gruebele
Imaging of Carbon Nanotube Electronic States Polarized by the Field of an Excited Quantum Dot. ACS nano 13 (2) (2019)
Meredith M Rickard, Yi Zhang, Martin Gruebele, Taras V Pogorelov
In-Cell Protein-Protein Contacts: Transient Interactions in the Crowd. The journal of physical chemistry letters 10 (18) (2019)
Mayank Boob, Yuhan Wang, Martin Gruebele
Proteins: "Boil 'Em, Mash 'Em, Stick 'Em in a Stew". The journal of physical chemistry. B 123 (40) (2019)
Huy A Nguyen, Can Liao, Alison Wallum, J Lyding, Martin Gruebele
Multi-scale dynamics at the glassy silica surface. The Journal of chemical physics 151 (17) (2019)
Drishti Guin, Hannah Gelman, Yuhan Wang, Martin Gruebele
Heat shock-induced chaperoning by Hsp70 is enabled in-cell. PloS one 14 (9) (2019)
Junfeng Chen, Jiang Wang, Ke Li, Yuhan Wang, Martin Gruebele, Andrew L Ferguson, Steven C Zimmerman
Polymeric "Clickase" Accelerates the Copper Click Reaction of Small Molecules, Proteins, and Cells. Journal of the American Chemical Society 141 (24) (2019)
Drishti Guin, Shriyaa Mittal, Brian Bozymski, Diwakar Shukla, Martin Gruebele
Dodine as a Kosmo-Chaotropic Agent. The journal of physical chemistry letters 10 (10) (2019)
Lydia Kisley, Kali A Miller, Caitlin M Davis, Drishti Guin, Elizabeth A Murphy, Martin Gruebele, Deborah E Leckband
Soluble Zwitterionic Poly(sulfobetaine) Destabilizes Proteins. Biomacromolecules 19 (9) (2018)
Caitlin M Davis, Laura Zanetti-Polzi, Martin Gruebele, Andrea Amadei, R Brian Dyer, Isabella Daidone
A quantitative connection of experimental and simulated folding landscapes by vibrational spectroscopy. Chemical science 9 (48) (2018)
Huy A Nguyen, Progna Banerjee, Duc Nguyen, Joseph W Lyding, Martin Gruebele, Prashant K Jain
STM Imaging of Localized Surface Plasmons on Individual Gold Nanoislands. The journal of physical chemistry letters 9 (8) (2018)
Shahar Sukenik, Mohammed Salam, Yuhan Wang, Martin Gruebele
In-Cell Titration of Small Solutes Controls Protein Stability and Aggregation. Journal of the American Chemical Society 140 (33) (2018)
Duc Nguyen, Joshua J Goings, Huy A Nguyen, Joseph Lyding, Xiaosong Li, Martin Gruebele
Orientation-dependent imaging of electronically excited quantum dots. The Journal of chemical physics 148 (6) (2018)
Yuhan Wang, Shahar Sukenik, Caitlin M Davis, Martin Gruebele
Cell Volume Controls Protein Stability and Compactness of the Unfolded State. The journal of physical chemistry. B 122 (49) (2018)
Caitlin M Davis, Martin Gruebele
Labeling for Quantitative Comparison of Imaging Measurements in Vitro and in Cells. Biochemistry 57 (13) (2018)
Zhenglin Yang, Kang Yong Loh, Yueh-Te Chu, Ruopei Feng, Nitya Sai Reddy Satyavolu, Mengyi Xiong, Stephanie M Nakamata Huynh, Kevin Hwang, Lele Li, Hang Xing, Xiao-Bing Zhang, Yann R Chemla, Martin Gruebele, Yi Lu
Optical Control of Metal Ion Probes in Cells and Zebrafish Using Highly Selective DNAzymes Conjugated to Upconversion Nanoparticles. Journal of the American Chemical Society 140 (50) (2018)
Duc Nguyen, Huy A Nguyen, Joseph W Lyding, Martin Gruebele
Imaging and Manipulating Energy Transfer Among Quantum Dots at Individual Dot Resolution. ACS nano 11 (6) (2017)
Shu-Han Chao, Jan Schäfer, Martin Gruebele
The Surface of Protein λ6-85 Can Act as a Template for Recurring Poly(ethylene glycol) Structure. Biochemistry 56 (42) (2017)
Zhaleh Ghaemi, Irisbel Guzman, David Gnutt, Zaida Luthey-Schulten, Martin Gruebele
Role of Electrostatics in Protein-RNA Binding: The Global vs the Local Energy Landscape. The journal of physical chemistry. B 121 (36) (2017)
Lydia Kisley, Kali A Miller, Drishti Guin, Xinyu Kong, Martin Gruebele, Deborah E Leckband
Direct Imaging of Protein Stability and Folding Kinetics in Hydrogels. ACS applied materials & interfaces 9 (26) (2017)