Mark Achtman

ORCID

Publication Activity (10 Years)

Years Active: 2017-2022
Publications (10 Years): 12

Top Venues

Genome research

Wellcome open research

PLoS genetics

Philosophical transactions of the Royal Society of London. Series B, Biological sciences

University of Warwick

University of California Berkeley (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Warwick May 01 2013

United Kingdom

Professor :: Warwick Medical School

University College Cork Jun 01 2007 - May 15 2013

Ireland

Professor/SFI PI :: Environmental Research Institute/Microbiology

Max-Planck Institut for infection Biology

Germany

Research group leader :: Meyer

Max-Planck Institute for molecular Genetics

Germany

Research group leader :: Trautner

Education History

University of California Berkeley

United States

PHD :: Molecular Biology

University of Manitoba

Canada

MSC :: Bacteriology & Immunology

McGill University

Canada

BSC :: Bacteriology & Immunology

Publications

Mark Achtman, Zhemin Zhou, Jane Charlesworth, Laura Baxter
EnteroBase: hierarchical clustering of 100 000s of bacterial genomes into species/subspecies and populations. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 377 (1861) (2022)
Kathryn E Holt, David M Aanensen, Mark Achtman
Genomic population structures of microbial pathogens. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 377 (1861) (2022)
Yoshan Moodley, Andrea Brunelli, Silvia Ghirotto, Andrey Klyubin, Ayas S Maady, William Tyne, Zilia Y Muñoz-Ramírez, Zhemin Zhou, Andrea Manica, Bodo Linz, Mark Achtman
Helicobacter pylori's historical journey through Siberia and the Americas. Proceedings of the National Academy of Sciences of the United States of America 118 (25) (2021)
Mark Achtman, Zhemin Zhou, Nabil-Fareed Alikhan, William Tyne, Julian Parkhill, Martin Cormican, Chien-Shun Chiou, Mia Torpdahl, Eva Litrup, Deirdre M Prendergast, John E Moore, Sam Strain, Christian Kornschober, Richard J Meinersmann, Alexandra Uesbeck, François-Xavier Weill, Aidan Coffey, Helene Andrews-Polymenis, Roy Curtiss Rd, Séamus Fanning
Genomic diversity of Salmonella enterica -The UoWUCC 10K genomes project. Wellcome open research 5 (2021)
Mark Achtman, Frederik Van den Broeck, Kerry K Cooper, Philippe Lemey, Craig T Parker, Zhemin Zhou, null null
Genomic population structure associated with repeated escape of Salmonella enterica ATCC14028s from the laboratory into nature. PLoS genetics 17 (9) (2021)
Zhemin Zhou, Jane Charlesworth, Mark Achtman
Accurate reconstruction of bacterial pan- and core genomes with PEPPAN. Genome research 30 (11) (2020)
Mark Achtman, Zhemin Zhou, Nabil-Fareed Alikhan, William Tyne, Julian Parkhill, Martin Cormican, Chien-Shun Chiou, Mia Torpdahl, Eva Litrup, Deirdre M Prendergast, John E Moore, Sam Strain, Christian Kornschober, Richard J Meinersmann, Alexandra Uesbeck, François-Xavier Weill, Aidan Coffey, Helene Andrews-Polymenis, Roy Curtiss Rd, Séamus Fanning
Genomic diversity of Salmonella enterica -The UoWUCC 10K genomes project. Wellcome open research 5 (2020)
Felix M Key, Cosimo Posth, Luis R Esquivel-Gomez, Ron Hübler, Maria A Spyrou, Gunnar U Neumann, Anja Furtwängler, Susanna Sabin, Marta Burri, Antje Wissgott, Aditya Kumar Lankapalli, Åshild J Vågene, Matthias Meyer, Sarah Nagel, Rezeda Tukhbatova, Aleksandr Khokhlov, Andrey Chizhevsky, Svend Hansen, Andrey B Belinsky, Alexey Kalmykov, Anatoly R Kantorovich, Vladimir E Maslov, Philipp W Stockhammer, Stefania Vai, Monica Zavattaro, Alessandro Riga, David Caramelli, Robin Skeates, Jessica Beckett, Maria Giuseppina Gradoli, Noah Steuri, Albert Hafner, Marianne Ramstein, Inga Siebke, Sandra Lösch, Yilmaz Selim Erdal, Nabil-Fareed Alikhan, Zhemin Zhou, Mark Achtman, Kirsten Bos, Sabine Reinhold, Wolfgang Haak, Denise Kühnert, Alexander Herbig, Johannes Krause
Emergence of human-adapted Salmonella enterica is linked to the Neolithization process. Nature ecology & evolution 4 (3) (2020)
Zhemin Zhou, Nabil-Fareed Alikhan, Khaled Mohamed, Yulei Fan, null null, Mark Achtman
The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity. Genome research 30 (1) (2019)
Nabil-Fareed Alikhan, Zhemin Zhou, Martin J Sergeant, Mark Achtman
A genomic overview of the population structure of Salmonella. PLoS genetics 14 (4) (2018)
Zhemin Zhou, Nabil-Fareed Alikhan, Martin J Sergeant, Nina Luhmann, Cátia Vaz, Alexandre P Francisco, João André Carriço, Mark Achtman
GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens. Genome research 28 (9) (2018)
Mark Achtman
How old are bacterial pathogens? Proceedings. Biological sciences 283 (1836) (2017)

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Publication Activity (10 Years)

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Mark Achtman