Julian Parkhill (J Parkhill)

ResearcherID Scopus Author ID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2013-2023
Publications (10 Years): 148

Top Venues

mBio

Nature microbiology

Nature communications

Journal of clinical microbiology

This page only lists publications with an associated author ORCID identifier.

Publications

Susannah J Salter, Robyn L Marsh, Julian Parkhill
Complete Genome Sequence of Ornithobacterium hominis Type Strain MSHR-COH1 (ATCC TSD-185). Microbiology resource announcements (2023)
Jody E Phelan, Paula Josefina Gomez-Gonzalez, Nuria Andreu, Yosuke Omae, Licht Toyo-Oka, Hideki Yanai, Reiko Miyahara, Supalert Nedsuwan, Paola Florez de Sessions, Susana Campino, Neneh Sallah, Julian Parkhill, Nat Smittipat, Prasit Palittapongarnpim, Taisei Mushiroda, Michiaki Kubo, Katsushi Tokunaga, Surakameth Mahasirimongkol, Martin Lloyd Hibberd, Taane Gregory Clark
Genome-wide host-pathogen analyses reveal genetic interaction points in tuberculosis disease. Nature communications 14 (1) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan W Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan W Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Liping Li, Francesca L Short, Karl A Hassan, Varsha Naidu, Alaska Pokhrel, Stephanie S Nagy, Farzana T Prity, Bhumika S Shah, Nusrat Afrin, Stephen Baker, Julian Parkhill, Amy K Cain, Ian T Paulsen
Systematic analyses identify modes of action of ten clinically relevant biocides and antibiotic antagonism in Acinetobacter baumannii. Nature microbiology (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan W Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan W Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan W Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Kesorn Angchagun, Phumrapee Boonklang, Chalita Chomkatekaew, Sukritpong Pakdeerat, Gumphol Wongsuwan, Premjit Amornchai, Vanaporn Wuthiekanun, Salwaluk Panapipat, Thatsanun Ngernseng, Naomi Waithira, Steve Walton, Direk Limmathurotsakul, Anoree Surawong, Suwatthiya Siriboon, Parinya Chamnan, Narisara Chantratita, Susanna J Dunachie, Jukka Corander, Emma E Davenport, Julian Knight, Julian Parkhill, Sharon J Peacock, Nicholas R Thomson, Nicholas Philip John Day, Claire Chewapreecha
BurkHostGEN: a study protocol for evaluating variations in the Burkholderia pseudomallei and host genomes associated with melioidosis infection. Wellcome open research 8 (2023)
Romney M Humphries, Eugene Bragin, Julian Parkhill, Grace Morales, Jonathan E Schmitz, Paul A Rhodes
Machine-Learning Model for Prediction of Cefepime Susceptibility in Escherichia coli from Whole-Genome Sequencing Data. Journal of clinical microbiology (2023)
Juan Manuel Belardinelli, Divya Arora, Charlotte Avanzi, William H Wheat, Josephine M Bryant, John S Spencer, Tom L Blundell, Julian Parkhill, R Andres Floto, Mary Jackson
Clinically relevant mutations in the PhoR sensor kinase of host-adapted Mycobacterium abscessus isolates impact response to acidic pH and virulence. Microbiology spectrum (2023)
Romney M Humphries, Eugene Bragin, Julian Parkhill, Grace Morales, Jonathan E Schmitz, Paul A Rhodes
Machine-Learning Model for Prediction of Cefepime Susceptibility in Escherichia coli from Whole-Genome Sequencing Data. Journal of clinical microbiology 61 (3) (2023)
Ram P Maharjan, Geraldine J Sullivan, Felise G Adams, Bhumika S Shah, Jane Hawkey, Natasha Delgado, Lucie Semenec, Hue Dinh, Liping Li, Francesca L Short, Julian Parkhill, Ian T Paulsen, Lars Barquist, Bart A Eijkelkamp, Amy K Cain
DksA is a conserved master regulator of stress response in Acinetobacter baumannii. Nucleic acids research (2023)
Francesca Gaccioli, Katie Stephens, Ulla Sovio, Flora Jessop, Hilary S Wong, Susanne Lager, Emma Cook, Marcus C de Goffau, Kirsty Le Doare, Sharon J Peacock, Julian Parkhill, David Stephen Charnock-Jones, Gordon C S Smith
Placental Streptococcus agalactiae DNA is associated with neonatal unit admission and foetal pro-inflammatory cytokines in term infants. Nature microbiology 8 (12) (2023)
Jody E Phelan, Paula Josefina Gomez-Gonzalez, Nuria Andreu, Yosuke Omae, Licht Toyo-Oka, Hideki Yanai, Reiko Miyahara, Supalert Nedsuwan, Paola Florez de Sessions, Susana Campino, Neneh Sallah, Julian Parkhill, Nat Smittipat, Prasit Palittapongarnpim, Taisei Mushiroda, Michiaki Kubo, Katsushi Tokunaga, Surakameth Mahasirimongkol, Martin Lloyd Hibberd, Taane Gregory Clark
Genome-wide host-pathogen analyses reveal genetic interaction points in tuberculosis disease. Nature communications 14 (1) (2023)
Jody E Phelan, Paula Josefina Gomez-Gonzalez, Nuria Andreu, Yosuke Omae, Licht Toyo-Oka, Hideki Yanai, Reiko Miyahara, Supalert Nedsuwan, Paola Florez de Sessions, Susana Campino, Neneh Sallah, Julian Parkhill, Nat Smittipat, Prasit Palittapongarnpim, Taisei Mushiroda, Michiaki Kubo, Katsushi Tokunaga, Surakameth Mahasirimongkol, Martin Lloyd Hibberd, Taane Gregory Clark
Genome-wide host-pathogen analyses reveal genetic interaction points in tuberculosis disease. Nature communications 14 (1) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan W Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Romney M Humphries, Eugene Bragin, Julian Parkhill, Grace Morales, Jonathan E Schmitz, Paul A Rhodes
Machine-Learning Model for Prediction of Cefepime Susceptibility in Escherichia coli from Whole-Genome Sequencing Data. Journal of clinical microbiology 61 (3) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan W Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Jody E Phelan, Paula Josefina Gomez-Gonzalez, Nuria Andreu, Yosuke Omae, Licht Toyo-Oka, Hideki Yanai, Reiko Miyahara, Supalert Nedsuwan, Paola Florez de Sessions, Susana Campino, Neneh Sallah, Julian Parkhill, Nat Smittipat, Prasit Palittapongarnpim, Taisei Mushiroda, Michiaki Kubo, Katsushi Tokunaga, Surakameth Mahasirimongkol, Martin Lloyd Hibberd, Taane Gregory Clark
Genome-wide host-pathogen analyses reveal genetic interaction points in tuberculosis disease. Nature communications 14 (1) (2023)
Jody E Phelan, Paula Josefina Gomez-Gonzalez, Nuria Andreu, Yosuke Omae, Licht Toyo-Oka, Hideki Yanai, Reiko Miyahara, Supalert Nedsuwan, Paola Florez de Sessions, Susana Campino, Neneh Sallah, Julian Parkhill, Nat Smittipat, Prasit Palittapongarnpim, Taisei Mushiroda, Michiaki Kubo, Katsushi Tokunaga, Surakameth Mahasirimongkol, Martin Lloyd Hibberd, Taane Gregory Clark
Genome-wide host-pathogen analyses reveal genetic interaction points in tuberculosis disease. Nature communications 14 (1) (2023)
Christopher Ruis, Aaron Weimann, Gerry Tonkin-Hill, Arun Prasad Pandurangan, Marta Matuszewska, Gemma G R Murray, Roger C Levesque, Tom L Blundell, R Andres Floto, Julian Parkhill
Mutational spectra are associated with bacterial niche. Nature communications 14 (1) (2023)
Romney M Humphries, Eugene Bragin, Julian Parkhill, Grace Morales, Jonathan E Schmitz, Paul A Rhodes
Machine-Learning Model for Prediction of Cefepime Susceptibility in Escherichia coli from Whole-Genome Sequencing Data. Journal of clinical microbiology 61 (3) (2023)
Jesper Larsen, Claire L Raisen, Xiaoliang Ba, Nicholas J Sadgrove, Guillermo Federico Padilla-González, Monique S J Simmonds, Igor Loncaric, Heidrun Kerschner, Petra Apfalter, Rainer Hartl, Ariane Deplano, Stien Vandendriessche, Barbora Černá Bolfíková, Pavel Hulva, Maiken C Arendrup, Rasmus K Hare, Céline Barnadas, Marc Stegger, Raphael N Sieber, Robert Leo Skov, Andreas Petersen, Øystein Angen, Sophie Lund Rasmussen, Carmen Espinosa-Gongora, Frank Møller Aarestrup, Laura J Lindholm, Suvi M Nykäsenoja, Frederic Laurent, Karsten Becker, Birgit Walther, Corinna Kehrenberg, Christiane Cuny, Franziska Layer, Guido Werner, Wolfgang Witte, Ivonne Stamm, Paolo Moroni, Hannah J Jørgensen, Herminia de Lencastre, Emilia Cercenado, Fernando García-Garrote, Stefan Börjesson, Sara Hæggman, Vincent Perreten, Christopher J Teale, Andrew S Waller, Bruno Pichon, Martin D Curran, Matthew J Ellington, John J Welch, Sharon J Peacock, David J Seilly, Fiona J E Morgan, Julian Parkhill, Nazreen F Hadjirin, Jodi A Lindsay, Matthew T G Holden, Giles F Edwards, Geoffrey Foster, Gavin K Paterson, Xavier Didelot, Mark A Holmes, Ewan M Harrison, Anders R Larsen
Emergence of methicillin resistance predates the clinical use of antibiotics. Nature 602 (7895) (2022)
Francesc Coll, Theodore Gouliouris, Sebastian Bruchmann, Jody E Phelan, Kathy E Raven, Taane Gregory Clark, Julian Parkhill, Sharon J Peacock
PowerBacGWAS: a computational pipeline to perform power calculations for bacterial genome-wide association studies. Communications biology 5 (1) (2022)
Siva Kumar Shanmugam, Narender Kumar, Tamilzhalagan Sembulingam, Suresh Babu Ramalingam, Ashok Selvaraj, Udhayakumar Rajendhiran, Sudha Solaiyappan, Srikanth P Tripathy, Mohan Natrajan, Padmapriyadarsini Chandrasekaran, Soumya Swaminathan, Julian Parkhill, Sharon J Peacock, Uma Devi K Ranganathan
Mycobacterium tuberculosis Lineages Associated with Mutations and Drug Resistance in Isolates from India. Microbiology spectrum 10 (3) (2022)
Lucas Boeck, Sophie Burbaud, Marcin J Skwark, Will H Pearson, Jasper Sangen, Andreas W Wuest, Eleanor K P Marshall, Aaron Weimann, Isobel Everall, Josephine M Bryant, Sony Malhotra, Bridget P Bannerman, Katrin Kierdorf, Tom L Blundell, Marc S Dionne, Julian Parkhill, R Andres Floto
Mycobacterium abscessus pathogenesis identified by phenogenomic analyses. Nature microbiology 7 (9) (2022)
Janine Zara Bowring, Yue Su, Ahlam Alsaadi, Sine L Svenningsen, Julian Parkhill, Hanne Ingmer
Screening for Highly Transduced Genes in Staphylococcus aureus Revealed Both Lateral and Specialized Transduction. Microbiology spectrum 10 (1) (2022)
Kathy E Raven, Eugene Bragin, Beth Blane, Danielle Leek, Narender Kumar, Paul A Rhodes, David A Enoch, Rachel Thaxter, Nicholas M Brown, Julian Parkhill, Sharon J Peacock
Large-Scale Evaluation of a Rapid Fully Automated Analysis Platform to Detect and Refute Outbreaks Based on MRSA Genome Comparisons. mSphere (2022)
Sara Frosth, Ellen Ruth A Morris, Hayley J Brodrick, Lars Frykberg, Karin Jacobsson, Julian Parkhill, Jan-Ingmar Flock, Tim Wood, Bengt Guss, David M Aanensen, Ashley G Boyle, Miia Riihimäki, Noah D Cohen, Andrew S Waller
Conservation of vaccine antigen sequences encoded by sequenced strains of Streptococcus equi subsp. equi. Equine veterinary journal (2022)
Noémie Lefrancq, Valérie Bouchez, Nadia Fernandes, Alex-Mikael Barkoff, Thijs Bosch, Tine Dalby, Thomas Åkerlund, Jessica Darenberg, Katerina Fabianova, Didrik F Vestrheim, Norman K Fry, Juan José González-López, Karolina Gullsby, Adele Habington, Qiushui He, David J Litt, Helena Martini, Denis Piérard, Paola Stefanelli, Marc Stegger, Jana Zavadilova, Nathalie Armatys, Annie Landier, Sophie Guillot, Samuel Leandro Hong, Philippe Lemey, Julian Parkhill, Julie Toubiana, Simon Cauchemez, Henrik Salje, Sylvain Brisse
Global spatial dynamics and vaccine-induced fitness changes of Bordetella pertussis . Science translational medicine 14 (642) (2022)
Anna Kaarina Pöntinen, Janetta Top, Sergio Arredondo-Alonso, Gerry Tonkin-Hill, Ana R Freitas, Carla Novais, Rebecca A Gladstone, Maiju Pesonen, Rodrigo Meneses, Henri Pesonen, John A Lees, Dorota Jamrozy, Stephen D Bentley, Val F Lanza, Carmen Torres, Luisa Peixe, Teresa M Coque, Julian Parkhill, Anita C Schürch, Rob J L Willems, Jukka Corander
Apparent nosocomial adaptation of Enterococcus faecalis predates the modern hospital era. Nature communications 12 (1) (2021)
Mark Achtman, Zhemin Zhou, Nabil-Fareed Alikhan, William Tyne, Julian Parkhill, Martin Cormican, Chien-Shun Chiou, Mia Torpdahl, Eva Litrup, Deirdre M Prendergast, John E Moore, Sam Strain, Christian Kornschober, Richard J Meinersmann, Alexandra Uesbeck, François-Xavier Weill, Aidan Coffey, Helene Andrews-Polymenis, Roy Curtiss Rd, Séamus Fanning
Genomic diversity of Salmonella enterica -The UoWUCC 10K genomes project. Wellcome open research 5 (2021)
Marcus C de Goffau, Amadou T Jallow, Chilel Sanyang, Andrew M Prentice, Niamh Meagher, David J Price, Peter A Revill, Julian Parkhill, Dora I A Pereira, Josef Wagner
Gut microbiomes from Gambian infants reveal the development of a non-industrialized Prevotella-based trophic network. Nature microbiology 7 (1) (2021)
Jo Dicks, Jake D Turnbull, Julie Russell, Julian Parkhill, Sarah Alexander
Genome Sequencing of a Historic Staphylococcus aureus Collection Reveals New Enterotoxin Genes and Sheds Light on the Evolution and Genomic Organization of This Key Virulence Gene Family. Journal of bacteriology 203 (10) (2021)
Laura M Nolan, Amy K Cain, Thomas Clamens, R Christopher D Furniss, Eleni Manoli, Maria A Sainz-Polo, Gordon Dougan, David Albesa-Jové, Julian Parkhill, Despoina A I Mavridou, Alain Filloux
Identification of Tse8 as a Type VI secretion system toxin from Pseudomonas aeruginosa that targets the bacterial transamidosome to inhibit protein synthesis in prey cells. Nature microbiology 6 (9) (2021)
Josephine M Bryant, Karen P Brown, Sophie Burbaud, Isobel Everall, Juan Manuel Belardinelli, Daniela Rodriguez-Rincon, Dorothy M Grogono, Chelsea M Peterson, Deepshikha Verma, Ieuan E S Evans, Christopher Ruis, Aaron Weimann, Divya Arora, Sony Malhotra, Bridget P Bannerman, Charlotte Passemar, Kerra Templeton, Gordon MacGregor, Kasim Jiwa, Andrew J Fisher, Tom L Blundell, Diane J Ordway, Mary Jackson, Julian Parkhill, R Andres Floto
Stepwise pathogenic evolution of Mycobacterium abscessus. Science (New York, N.Y.) 372 (6541) (2021)
Andries J van Tonder, Mark J Thornton, Andrew James Kerr Conlan, Keith A Jolley, Lee Goolding, Andrew P Mitchell, James Dale, Eleftheria Palkopoulou, Philip J Hogarth, R Glyn Hewinson, James L N Wood, Julian Parkhill
Inferring Mycobacterium bovis transmission between cattle and badgers using isolates from the Randomised Badger Culling Trial. PLoS pathogens 17 (11) (2021)
Brekhna Hassan, Muhammad Ijaz, Asadullah Khan, Kirsty Sands, Georgios-Ion Serfas, Liam Clayfield, Maisra Mohammed El-Bouseary, Giulia Lai, Edward Portal, Afifah Khan, William J Watkins, Julian Parkhill, Timothy Rutland Walsh
A role for arthropods as vectors of multidrug-resistant Enterobacterales in surgical site infections from South Asia. Nature microbiology 6 (10) (2021)
Christopher Ruis, Josephine M Bryant, Scott Cameron Bell, Rachel M Thomson, Rebecca M Davidson, Nabeeh A Hasan, Jakko van Ingen, Michael Strong, R Andres Floto, Julian Parkhill
Dissemination of Mycobacterium abscessus via global transmission networks. Nature microbiology 6 (10) (2021)
Matthew J Dorman, Daryl Domman, Tomás Javier Poklepovich, Charlotte Tolley, Gisella Zolezzi, Leanne Kane, María Rosa Viñas, Marcela Panagópulo, Miriam Moroni, Norma Binsztein, María Inés Caffer, Simon Clare, Gordon Dougan, George P C Salmond, Julian Parkhill, Josefina Campos, Nicholas R Thomson
Genomics of the Argentinian cholera epidemic elucidate the contrasting dynamics of epidemic and endemic Vibrio cholerae. Nature communications 11 (1) (2020)
Francesca L Short, Gianna Di Sario, Nathalie T Reichmann, Colin Kleanthous, Julian Parkhill, Peter W Taylor
Genomic Profiling Reveals Distinct Routes To Complement Resistance in Klebsiella pneumoniae. Infection and immunity 88 (8) (2020)
Evangelos Mourkas, Aidan J Taylor, Guillaume Méric, Sion C Bayliss, Ben Pascoe, Leonardos Mageiros, Jessica K Calland, Matthew D Hitchings, Anne Ridley, Ana Vidal, Ken J Forbes, Norval J C Strachan, Craig T Parker, Julian Parkhill, Keith A Jolley, Alison J Cody, Martin Christopher James Maiden, David J Kelly, Samuel K Sheppard
Agricultural intensification and the evolution of host specialism in the enteric pathogen Campylobacter jejuni. Proceedings of the National Academy of Sciences of the United States of America 117 (20) (2020)
Sophia David, Victoria Cohen, Sandra Reuter, Anna E Sheppard, Tommaso Giani, Julian Parkhill, null null, null null, Gian Maria Rossolini, Edward J Feil, Hajo Grundmann, David M Aanensen
Integrated chromosomal and plasmid sequence analyses reveal diverse modes of carbapenemase gene spread among Klebsiella pneumoniae. Proceedings of the National Academy of Sciences of the United States of America 117 (40) (2020)
Dorota Jamrozy, Merijn W Bijlsma, Marcus C de Goffau, Diederik van de Beek, Taco W Kuijpers, Julian Parkhill, Arie van der Ende, Stephen D Bentley
Increasing incidence of group B streptococcus neonatal infections in the Netherlands is associated with clonal expansion of CC17 and CC23. Scientific reports 10 (1) (2020)
Shui Ping Wang, Luis A Rubio, Sylvia H Duncan, Gillian E Donachie, Grietje Holtrop, Galiana Lo, Freda M Farquharson, Josef Wagner, Julian Parkhill, Petra Louis, Alan W Walker, Harry J Flint
Pivotal Roles for pH, Lactate, and Lactate-Utilizing Bacteria in the Stability of a Human Colonic Microbial Ecosystem. mSystems 5 (5) (2020)
John A Lees, T Tien Mai, Marco Galardini, Nicole E Wheeler, Samuel T Horsfield, Julian Parkhill, Jukka Corander
Improved Prediction of Bacterial Genotype-Phenotype Associations Using Interpretable Pangenome-Spanning Regressions. mBio 11 (4) (2020)
Alex J Mullins, Cerith Jones, Matthew J Bull, Gordon Webster, Julian Parkhill, Thomas Richard Connor, James A H Murray, Gregory L Challis, Eshwar Mahenthiralingam
Genomic Assemblies of Members of Burkholderia and Related Genera as a Resource for Natural Product Discovery. Microbiology resource announcements 9 (42) (2020)
Amy K Cain, Lars Barquist, Andrew L Goodman, Ian T Paulsen, Julian Parkhill, Tim van Opijnen
A decade of advances in transposon-insertion sequencing. Nature reviews. Genetics 21 (9) (2020)
Mark Achtman, Zhemin Zhou, Nabil-Fareed Alikhan, William Tyne, Julian Parkhill, Martin Cormican, Chien-Shun Chiou, Mia Torpdahl, Eva Litrup, Deirdre M Prendergast, John E Moore, Sam Strain, Christian Kornschober, Richard J Meinersmann, Alexandra Uesbeck, François-Xavier Weill, Aidan Coffey, Helene Andrews-Polymenis, Roy Curtiss Rd, Séamus Fanning
Genomic diversity of Salmonella enterica -The UoWUCC 10K genomes project. Wellcome open research 5 (2020)
C Coral Dominguez-Medina, Nicola L Rash, Sylvain Robillard, Carl Robinson, Androulla Efstratiou, Karen Broughton, Julian Parkhill, Matthew T G Holden, María Rocío López-Álvarez, Romain Paillot, Andrew S Waller
SpeS: A Novel Superantigen and Its Potential as a Vaccine Adjuvant against Strangles. International journal of molecular sciences 21 (12) (2020)
Elisa Venturini, Sarah L Svensson, Sandra Maaß, Rick Gelhausen, Florian Eggenhofer, Lei Li, Amy K Cain, Julian Parkhill, Dörte Becher, Rolf Backofen, Lars Barquist, Cynthia Mira Sharma, Alexander J Westermann, Jörg Vogel
A global data-driven census of Salmonella small proteins and their potential functions in bacterial virulence. microLife 1 (1) (2020)
Francesca Gaccioli, Susanne Lager, Marcus C de Goffau, Ulla Sovio, Justyna Dopierala, Sungsam Gong, Emma Cook, Andrew Sharkey, Ashley Moffett, Wai Kwong Lee, Christian Delles, Cristina Venturini, Judith Breuer, Julian Parkhill, Sharon J Peacock, David Stephen Charnock-Jones, Gordon C S Smith
Fetal inheritance of chromosomally integrated human herpesvirus 6 predisposes the mother to pre-eclampsia. Nature microbiology 5 (7) (2020)
Joleen Masschelein, Paulina K Sydor, Christian Hobson, Rhiannon Howe, Cerith Jones, Douglas M Roberts, Zhong Ling Yap, Julian Parkhill, Eshwar Mahenthiralingam, Gregory L Challis
A dual transacylation mechanism for polyketide synthase chain release in enacyloxin antibiotic biosynthesis. Nature chemistry 11 (10) (2019)
Jake D Turnbull, Julie E Russell, Mohammed-Abbas Fazal, Nicholas E Grayson, Ana Deheer-Graham, Karen Oliver, Nancy Holroyd, Julian Parkhill, Sarah Alexander
Whole-Genome Sequences of Five Strains of Kocuria rosea, NCTC2676, NCTC7514, NCTC7512, NCTC7528, and NCTC7511. Microbiology resource announcements 8 (44) (2019)
Nicholas M Brown, Beth Blane, Kathy E Raven, Narender Kumar, Danielle Leek, Eugene Bragin, Paul A Rhodes, David A Enoch, Rachel Thaxter, Julian Parkhill, Sharon J Peacock
Pilot Evaluation of a Fully Automated Bioinformatics System for Analysis of Methicillin-Resistant Staphylococcus aureus Genomes and Detection of Outbreaks. Journal of clinical microbiology 57 (11) (2019)
Catherine Ludden, Kathy E Raven, Dorota Jamrozy, Theodore Gouliouris, Beth Blane, Francesc Coll, Marcus de Goffau, Plamena Naydenova, Carolyne Horner, Juan Hernandez-Garcia, Paul Wood, Nazreen Hadjirin, Milorad Radakovic, Nicholas M Brown, Mark Holmes, Julian Parkhill, Sharon J Peacock
One Health Genomic Surveillance of Escherichia coli Demonstrates Distinct Lineages and Mobile Genetic Elements in Isolates from Humans versus Livestock. mBio 10 (1) (2019)
Leonor Sánchez-Busó, Daniel Golparian, Jukka Corander, Yonatan Hagai Grad, Makoto Ohnishi, Rebecca Flemming, Julian Parkhill, Stephen D Bentley, Magnus Unemo, Simon R Harris
The impact of antimicrobials on gonococcal evolution. Nature microbiology 4 (11) (2019)
Claire Chewapreecha, Alison E Mather, Simon R Harris, Martin Hunt, Matthew T G Holden, Chutima Chaichana, Vanaporn Wuthiekanun, Gordon Dougan, Nicholas P J Day, Direk Limmathurotsakul, Julian Parkhill, Sharon J Peacock
Genetic variation associated with infection and the environment in the accidental pathogen Burkholderia pseudomallei. Communications biology 2 (2019)
Mark R Davies, Liam McIntyre, Ankur Mutreja, Jake A Lacey, John A Lees, Rebecca J Towers, Sebastián Duchêne, Pierre R Smeesters, Hannah R Frost, David J Price, Matthew T G Holden, Sophia David, Philip M Giffard, Kate A Worthing, Anna C Seale, James Alexander Berkley, Simon R Harris, Tania Rivera-Hernandez, Olga Berking, Amanda J Cork, Rosângela S L A Torres, Trevor Lithgow, Richard A Strugnell, Rene Bergmann, Patric Nitsche-Schmitz, Gusharan S Chhatwal, Stephen D Bentley, John D Fraser, Nicole J Moreland, Jonathan R Carapetis, Andrew C Steer, Julian Parkhill, Allan Saul, Deborah A Williamson, Bart J Currie, Steven Y C Tong, Gordon Dougan, Mark J Walker
Atlas of group A streptococcal vaccine candidates compiled using large-scale comparative genomics. Nature genetics 51 (6) (2019)
Mohammed-Abbas Fazal, Sarah Alexander, Nicholas E Grayson, Ana Deheer-Graham, Karen Oliver, Nancy Holroyd, Julian Parkhill, Julie E Russell
Complete Whole-Genome Sequences of Two Raoultella terrigena Strains, NCTC 13097 and NCTC 13098, Isolated from Human Cases. Microbiology resource announcements 8 (27) (2019)
Matthew Jenner, Xinyun Jian, Yousef Dashti, Joleen Masschelein, Christian Hobson, Douglas M Roberts, Cerith Jones, Simon R Harris, Julian Parkhill, Huzefa A Raja, Nicholas H Oberliels, Cedric J Pearce, Eshwar Mahenthiralingam, Gregory L Challis
An unusual Burkholderia gladioli double chain-initiating nonribosomal peptide synthetase assembles 'fungal' icosalide antibiotics. Chemical science 10 (21) (2019)
Asma Munir, Narender Kumar, Suresh Babu Ramalingam, Sembulingam Tamilzhalagan, Siva Kumar Shanmugam, Alangudi Natarajan Palaniappan, Dina Nair, Padma Priyadarshini, Mohan Natarajan, Srikanth Tripathy, Uma Devi Ranganathan, Sharon J Peacock, Julian Parkhill, Tom L Blundell, Sony Malhotra
Identification and Characterization of Genetic Determinants of Isoniazid and Rifampicin Resistance in Mycobacterium tuberculosis in Southern India. Scientific reports 9 (1) (2019)
Arun Gonzales Decano, Catherine Ludden, Theresa Feltwell, Kim Judge, Julian Parkhill, Tim Downing
Complete Assembly of Escherichia coli Sequence Type 131 Genomes Using Long Reads Demonstrates Antibiotic Resistance Gene Variation within Diverse Plasmid and Chromosomal Contexts. mSphere 4 (3) (2019)
Álvaro Chiner-Oms, Michael Berney, Christine Boinett, Fernando Gonzáles-Candelas, Douglas B Young, Sebastien Gagneux, William R Jacobs, Julian Parkhill, Teresa Cortes, Iñaki Comas
Genome-wide mutational biases fuel transcriptional diversity in the Mycobacterium tuberculosis complex. Nature communications 10 (1) (2019)
John A Lees, Bart Ferwerda, Philip H C Kremer, Nicole E Wheeler, Mercedes Valls Serón, Nicholas J Croucher, Rebecca A Gladstone, Hester J Bootsma, Nynke Y Rots, Alienke J Wijmega-Monsuur, Elisabeth A M Sanders, Krzysztof Trzciński, Anne L Wyllie, Aeilko H Zwinderman, Leonard H van den Berg, Wouter Van Rheenen, Jan H Veldink, Zitta B Harboe, Lene F Lundbo, Lisette C P G M de Groot, Natasja M van Schoor, Nathalie van der Velde, Lars H Ängquist, Thorkild I A Sørensen, Ellen A Nohr, Alexander J Mentzer, Tara C Mills, Julian C Knight, Mignon du Plessis, Susan Nzenze, Jeffrey N Weiser, Julian Parkhill, Shabir Madhi, Thomas Benfield, Anne von Gottberg, Arie van der Ende, Matthijs C Brouwer, Jeffrey C Barrett, Stephen D Bentley, Diederik van de Beek
Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis. Nature communications 10 (1) (2019)
Leonor Sánchez-Busó, Daniel Golparian, Julian Parkhill, Magnus Unemo, Simon R Harris
Genetic variation regulates the activation and specificity of Restriction-Modification systems in Neisseria gonorrhoeae. Scientific reports 9 (1) (2019)
Gordon Webster, Alex J Mullins, Aimee S Bettridge, Cerith Jones, Edward Cunningham-Oakes, Thomas Richard Connor, Julian Parkhill, Eshwar Mahenthiralingam
The Genome Sequences of Three Paraburkholderia sp. Strains Isolated from Wood-Decay Fungi Reveal Them as Novel Species with Antimicrobial Biosynthetic Potential. Microbiology resource announcements 8 (34) (2019)
Eike J Steinig, Sebastian Duchene, D Ashley Robinson, Stefan Monecke, Maho Yokoyama, Maisem Laabei, Peter Slickers, Patiyan Andersson, Deborah Ann Williamson, Angela Kearns, Richard V Goering, Elizabeth Dickson, Ralf Ehricht, Margaret Ip, Matthew V N O'Sullivan, Geoffrey W Coombs, Andreas Petersen, Grainne Brennan, Anna C Shore, David C Coleman, Annalisa Pantosti, Herminia de Lencastre, Henrik Westh, Nobumichi Kobayashi, Helen Heffernan, Birgit Strommenger, Franziska Layer, Stefan Weber, Hege Vangstein Aamot, Leila Skakni, Sharon J Peacock, Derek Sarovich, Simon Harris, Julian Parkhill, Ruth C Massey, Matthew T G Holden, Stephen D Bentley, Steven Y C Tong
Evolution and Global Transmission of a Multidrug-Resistant, Community-Associated Methicillin-Resistant Staphylococcus aureus Lineage from the Indian Subcontinent. mBio 10 (6) (2019)
Kathy E Raven, Beth Blane, Danielle Leek, Carol Churcher, Paula Kokko-Gonzales, Dhamayanthi Pugazhendhi, Louise Fraser, Jason Betley, Julian Parkhill, Sharon J Peacock
Methodology for Whole-Genome Sequencing of Methicillin-Resistant Staphylococcus aureus Isolates in a Routine Hospital Microbiology Laboratory. Journal of clinical microbiology 57 (6) (2019)
Ewan M Harrison, Xiaoliang Ba, Francesc Coll, Beth Blane, Olivier Restif, Henry Carvell, Claudio Umberto Köser, Dorota Jamrozy, Sandra Reuter, Andrew Lovering, Nicholas Gleadall, Katherine L Bellis, Anne-Catrin Uhlemann, Franklin D Lowy, Ruth C Massey, Inês R Grilo, Rita Sobral, Jesper Larsen, Anders Rhod Larsen, Carina Vingsbo Lundberg, Julian Parkhill, Gavin K Paterson, Matthew T G Holden, Sharon J Peacock, Mark A Holmes
Genomic identification of cryptic susceptibility to penicillins and β-lactamase inhibitors in methicillin-resistant Staphylococcus aureus. Nature microbiology 4 (10) (2019)
Mohammed-Abbas Fazal, Sarah Alexander, Nicholas E Grayson, Ana Deheer-Graham, Karen Oliver, Nancy Holroyd, Julian Parkhill, Julie E Russell
Complete Whole-Genome Sequence of Haemophilus haemolyticus NCTC 10839. Microbiology resource announcements 8 (25) (2019)
William M Rooney, Rhys W Grinter, Annapaula Correia, Julian Parkhill, Daniel C Walker, Joel J Milner
Engineering bacteriocin-mediated resistance against the plant pathogen Pseudomonas syringae. Plant biotechnology journal 18 (5) (2019)
Amy K Cain, Laura M Nolan, Geraldine J Sullivan, Cynthia B Whitchurch, Alain Filloux, Julian Parkhill
Complete Genome Sequence of Pseudomonas aeruginosa Reference Strain PAK. Microbiology resource announcements 8 (41) (2019)
Connor Sharp, Christine Boinett, Amy Cain, Nicholas G Housden, Sandip Kumar, Keith Turner, Julian Parkhill, Colin Kleanthous
O-Antigen-Dependent Colicin Insensitivity of Uropathogenic Escherichia coli. Journal of bacteriology 201 (4) (2019)
Alex J Mullins, James A H Murray, Matthew J Bull, Matthew Jenner, Cerith Jones, Gordon Webster, Angharad E Green, Daniel R Neill, Thomas Richard Connor, Julian Parkhill, Gregory L Challis, Eshwar Mahenthiralingam
Genome mining identifies cepacin as a plant-protective metabolite of the biopesticidal bacterium Burkholderia ambifaria. Nature microbiology 4 (6) (2019)
Alan McNally, Teemu Kallonen, Christopher Connor, Khalil Abudahab, David M Aanensen, Carolyne Horner, Sharon J Peacock, Julian Parkhill, Nicholas J Croucher, Jukka Corander
Diversification of Colonization Factors in a Multidrug-Resistant Escherichia coli Lineage Evolving under Negative Frequency-Dependent Selection. mBio 10 (2) (2019)
Pravech Ajawatanawong, Hideki Yanai, Nat Smittipat, Areeya Disratthakit, Norio Yamada, Reiko Miyahara, Supalert Nedsuwan, Worarat Imasanguan, Pacharee Kantipong, Boonchai Chaiyasirinroje, Jiraporn Wongyai, Supada Plitphonganphim, Pornpen Tantivitayakul, Jody E Phelan, Julian Parkhill, Taane Gregory Clark, Martin L Hibberd, Wuthiwat Ruangchai, Panawun Palittapongarnpim, Tada Juthayothin, Yuttapong Thawornwattana, Wasna Viratyosin, Sissades Tongsima, Surakameth Mahasirimongkol, Katsushi Tokunaga, Prasit Palittapongarnpim
A novel Ancestral Beijing sublineage of Mycobacterium tuberculosis suggests the transition site to Modern Beijing sublineages. Scientific reports 9 (1) (2019)
Louise Kime, Christopher P Randall, Frank I Banda, Francesc Coll, John Wright, Joseph Richardson, Joanna Empel, Julian Parkhill, Alex J O'Neill
Transient Silencing of Antibiotic Resistance by Mutation Represents a Significant Potential Source of Unanticipated Therapeutic Failure. mBio 10 (5) (2019)
Kanny Diallo, Jenny MacLennan, Odile B Harrison, Chisomo Msefula, Samba O Sow, Doumagoum M Daugla, Errin Johnson, Caroline Trotter, Calman A MacLennan, Julian Parkhill, Ray Borrow, Brian M Greenwood, Martin Christopher James Maiden
Genomic characterization of novel Neisseria species. Scientific reports 9 (1) (2019)
C P Harkins, M A McAleer, D Bennett, M McHugh, O M Fleury, K A Pettigrew, Katarina Oravcová, Julian Parkhill, C M Proby, Robert S Dawe, J A Geoghegan, Alan D Irvine, Matthew T G Holden
The widespread use of topical antimicrobials enriches for resistance in Staphylococcus aureus isolated from patients with atopic dermatitis. The British journal of dermatology 179 (4) (2018)
Daryl Domman, Marie-Laure Quilici, Matthew J Dorman, Elisabeth Njampeko, Ankur Mutreja, Alison E Mather, Gabriella Delgado, Rosario Morales-Espinosa, Patrick A D Grimont, Marcial Leonardo Lizarraga-Partida, Christiane Bouchier, David M Aanensen, Pablo Kuri-Morales, Cheryl L Tarr, Gordon Dougan, Julian Parkhill, Josefina Campos, Alejandro Cravioto, François-Xavier Weill, Nicholas R Thomson
Integrated view of Vibrio cholerae in the Americas. Science (New York, N.Y.) 358 (6364) (2018)
Alison E Mather, Tu Le Thi Phuong, Yunfeng Gao, Simon Clare, Subhankar Mukhopadhyay, David A Goulding, Nhu Tran Do Hoang, Ha Thanh Tuyen, Nguyen Phu Huong Lan, Corinne N Thompson, Nguyen Hoang Thu Trang, Juan Carrique-Mas, Ngo Tri Tue, James I Campbell, Maia A Rabaa, Duy Pham Thanh, Katherine Harcourt, Ngo Thi Hoa, Nguyen Vinh Trung, Constance Schultsz, Gabriel G Perron, John E Coia, Derek J Brown, Chinyere Okoro, Julian Parkhill, Nicholas R Thomson, Nguyen Van Vinh Chau, Guy E Thwaites, Duncan J Maskell, Gordon Dougan, Linda J Kenney, Stephen Baker
New Variant of Multidrug-Resistant Salmonella enterica Serovar Typhimurium Associated with Invasive Disease in Immunocompromised Patients in Vietnam. mBio 9 (5) (2018)
Matthew J Dorman, Theresa Feltwell, David A Goulding, Julian Parkhill, Francesca L Short
The Capsule Regulatory Network of Klebsiella pneumoniae Defined by density-TraDISort. mBio 9 (6) (2018)
Isaac Darko Otchere, Mireia Coscollá, Leonor Sánchez-Busó, Adwoa Asante-Poku, Daniela Brites, Chloe Loiseau, Conor Meehan, Stephen Osei-Wusu, Audrey Forson, Clement Laryea, Abdallah Iddrisu Yahayah, Akosua Baddoo, Gloria Akosua Ansa, Samuel Yaw Aboagye, Prince Asare, Sonia Borrell, Florian Gehre, Patrick Beckert, Thomas A Kohl, Sanoussi N'dira, Christian Beisel, Martin Antonio, Stefan Niemann, Bouke C de Jong, Julian Parkhill, Simon R Harris, Sebastien Gagneux, Dorothy Yeboah-Manu
Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches. Scientific reports 8 (1) (2018)
Keiji Fukuda, Direk Limmathurotsakul, Iruka N Okeke, Nandini Shetty, Hindrik Rogier van Doorn, Nicholas A Feasey, Francesca Chiara, Ghada Zoubiane, Tim Jinks, Julian Parkhill, Jean Patel, Stuart W J Reid, Alison Helen Holmes, Sharon J Peacock, null null
Surveillance and Epidemiology of Drug Resistant Infections Consortium (SEDRIC): Supporting the transition from strategy to action. Wellcome open research 3 (2018)
Martha M Liu, Christine J Boinett, Anson C K Chan, Julian Parkhill, Michael E P Murphy, Erin C Gaynor
Investigating the Campylobacter jejuni Transcriptional Response to Host Intestinal Extracts Reveals the Involvement of a Widely Conserved Iron Uptake System. mBio 9 (4) (2018)
Jan Heyckendorf, Sönke Andres, Claudio Umberto Köser, Ioana Diana Olaru, Thomas Schön, Erik Sturegård, Patrick Beckert, Viola Schleusener, Thomas A Kohl, Doris Hillemann, Danesh Moradigaravand, Julian Parkhill, Sharon J Peacock, Stefan Niemann, Christoph Lange, Matthias Merker
What Is Resistance? Impact of Phenotypic versus Molecular Drug Resistance Testing on Therapy for Multi- and Extensively Drug-Resistant Tuberculosis. Antimicrobial agents and chemotherapy 62 (2) (2018)
John A Lees, Michelle Kendall, Julian Parkhill, Caroline Colijn, Stephen D Bentley, Simon R Harris
Evaluation of phylogenetic reconstruction methods using bacterial whole genomes: a simulation based study. Wellcome open research 3 (2018)
Francesc Coll, Jody Phelan, Grant A Hill-Cawthorne, Mridul B Nair, Kim Mallard, Shahjahan Ali, Abdallah M Abdallah, Saad Alghamdi, Mona Alsomali, Abdallah O Ahmed, Stephanie Portelli, Yaa Oppong, Adriana Alves, Theolis Barbosa Bessa, Susana Campino, Maxine Caws, Anirvan Chatterjee, Amelia C Crampin, Keertan Dheda, Nicholas Furnham, Judith R Glynn, Louis Grandjean, Dang Minh Ha, Rumina Hasan, Zahra Hasan, Martin L Hibberd, Moses Joloba, Edward C Jones-López, Tomoshige Matsumoto, Anabela Miranda, David A J Moore, Nora Mocillo, Stefan Panaiotov, Julian Parkhill, Carlos Penha, João Perdigão, Isabel Portugal, Zineb Rchiad, Jaime Robledo, Patricia Sheen, Nashwa Talaat Shesha, Frik A Sirgel, Christophe Sola, Erivelton Oliveira Sousa, Elizabeth M Streicher, Paul Van Helden, Miguel Viveiros, Robert M Warren, Ruth McNerney, Arnab Pain, Taane Gregory Clark
Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis. Nature genetics 50 (2) (2018)
Amy K Cain, Christine J Boinett, Lars Barquist, Janina Dordel, Maria Fookes, Matthew Mayho, Matthew J Ellington, David Goulding, Derek Pickard, Ryan R Wick, Kathryn E Holt, Julian Parkhill, Nicholas R Thomson
Morphological, genomic and transcriptomic responses of Klebsiella pneumoniae to the last-line antibiotic colistin. Scientific reports 8 (1) (2018)
Claudio Umberto Köser, Jan Heyckendorf, Sönke Andres, Ioana Diana Olaru, Thomas Schön, Erik Sturegård, Patrick Beckert, Viola Schleusener, Thomas A Kohl, Doris Hillemann, Danesh Moradigaravand, Julian Parkhill, Sharon J Peacock, Stefan Niemann, Christoph Lange, Matthias Merker
Reply to Dookie et al., "Whole-Genome Sequencing To Guide the Selection of Treatment for Drug-Resistant Tuberculosis". Antimicrobial agents and chemotherapy 62 (8) (2018)
Emily J Richardson, Rodrigo Bacigalupe, Ewan M Harrison, Lucy A Weinert, Samantha J Lycett, Manouk Vrieling, Kirsty Robb, Paul A Hoskisson, Matthew T G Holden, Edward J Feil, Gavin K Paterson, Steven Y C Tong, Adebayo Shittu, Willem van Wamel, David M Aanensen, Julian Parkhill, Sharon J Peacock, Jukka Corander, Mark Holmes, J Ross Fitzgerald
Gene exchange drives the ecological success of a multi-host bacterial pathogen. Nature ecology & evolution 2 (9) (2018)
Lauren A Cowley, Alison S Low, Derek Pickard, Christine J Boinett, Timothy J Dallman, Martin Day, Neil Perry, David L Gally, Julian Parkhill, Claire Jenkins, Amy K Cain
Transposon Insertion Sequencing Elucidates Novel Gene Involvement in Susceptibility and Resistance to Phages T4 and T7 in Escherichia coli O157. mBio 9 (4) (2018)
Prasit Palittapongarnpim, Pravech Ajawatanawong, Wasna Viratyosin, Nat Smittipat, Areeya Disratthakit, Surakameth Mahasirimongkol, Hideki Yanai, Norio Yamada, Supalert Nedsuwan, Worarat Imasanguan, Pacharee Kantipong, Boonchai Chaiyasirinroje, Jiraporn Wongyai, Licht Toyo-Oka, Jody E Phelan, Julian Parkhill, Taane Gregory Clark, Martin L Hibberd, Wuthiwat Ruengchai, Panawun Palittapongarnpim, Tada Juthayothin, Sissades Tongsima, Katsushi Tokunaga
Evidence for Host-Bacterial Co-evolution via Genome Sequence Analysis of 480 Thai Mycobacterium tuberculosis Lineage 1 Isolates. Scientific reports 8 (1) (2018)
Matthias Richard, Ana Victoria Gutiérrez, Albertus Viljoen, Daniela Rodriguez-Rincon, Françoise Roquet-Baneres, Mickael Blaise, Isobel Everall, Julian Parkhill, R Andres Floto, Laurent Kremer
Mutations in the MAB_2299c TetR Regulator Confer Cross-Resistance to Clofazimine and Bedaquiline in Mycobacterium abscessus. Antimicrobial agents and chemotherapy 63 (1) (2018)
François-Xavier Weill, Daryl Domman, Elisabeth Njampeko, Cheryl L Tarr, Jean Rauzier, Nizar Fawal, Karen H Keddy, Henrik Salje, Sandra Moore, Asish K Mukhopadhyay, Raymond Bercion, Francisco J Luquero, Antoinette Ngandjio, Mireille Dosso, Elena Monakhova, Benoit Garin, Christiane Bouchier, Carlo Pazzani, Ankur Mutreja, Roland Grunow, Fati Sidikou, Laurence Bonte, Sébastien Breurec, Maria Damian, Berthe-Marie Njanpop-Lafourcade, Guillaume Sapriel, Anne-Laure Page, Monzer Hamze, Myriam Henkens, Goutam Chowdhury, Martin Mengel, Jean-Louis Koeck, Jean-Michel Fournier, Gordon Dougan, Patrick A D Grimont, Julian Parkhill, Kathryn E Holt, Renaud Piarroux, Thandavarayan Ramamurthy, Marie-Laure Quilici, Nicholas R Thomson
Genomic history of the seventh pandemic of cholera in Africa. Science (New York, N.Y.) 358 (6364) (2018)
Theodore Gouliouris, Kathy E Raven, Catherine Ludden, Beth Blane, Jukka Corander, Carolyne S Horner, Juan Hernandez-Garcia, Paul Wood, Nazreen F Hadjirin, Milorad Radakovic, Mark A Holmes, Marcus de Goffau, Nicholas M Brown, Julian Parkhill, Sharon J Peacock
Genomic Surveillance of Enterococcus faecium Reveals Limited Sharing of Strains and Resistance Genes between Livestock and Humans in the United Kingdom. mBio 9 (6) (2018)
Ewan M Harrison, Francesc Coll, Michelle S Toleman, Beth Blane, Nicholas M Brown, M Estee Török, Julian Parkhill, Sharon J Peacock
Genomic surveillance reveals low prevalence of livestock-associated methicillin-resistant Staphylococcus aureus in the East of England. Scientific reports 7 (1) (2017)
Danesh Moradigaravand, Dorota Jamrozy, Rafal Mostowy, Annaliesa Anderson, Emma K Nickerson, Janjira Thaipadungpanit, Vanaporn Wuthiekanun, Direk Limmathurotsakul, Sarunporn Tandhavanant, Chanthiwa Wikraiphat, Gumphol Wongsuvan, Nittaya Teerawattanasook, Yaowaruk Jutrakul, Nuttiya Srisurat, Prajuab Chaimanee, T Eoin West, Beth Blane, Julian Parkhill, Narisara Chantratita, Sharon J Peacock
Evolution of the Staphylococcus argenteus ST2250 Clone in Northeastern Thailand Is Linked with the Acquisition of Livestock-Associated Staphylococcal Genes. mBio 8 (4) (2017)

Julian Parkhill.css-eqlu8i{font-size:small;padding-left:4px;} (J Parkhill)

Publication Activity (10 Years)

Top Topics

Top Venues

Julian Parkhill (J Parkhill)