Julian Parkhill (J Parkhill)

ResearcherID Scopus Author ID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2013-2024
Publications (10 Years): 176

Top Venues

Nature communications

mBio

Nature microbiology

Journal of clinical microbiology

This page only lists publications with an associated author ORCID identifier.

Publications

Kavita De, Juan Manuel Belardinelli, Arun Prasad Pandurangan, Teddy Ehianeta, Elena Lian, Zuzana Palčeková, Ha Lam, Mercedes Gonzalez-Juarrero, Josephine M Bryant, Tom L Blundell, Julian Parkhill, R Andres Floto, Todd L Lowary, William H Wheat, Mary Jackson
Lipoarabinomannan modification as a source of phenotypic heterogeneity in host-adapted Mycobacterium abscessus isolates. Proceedings of the National Academy of Sciences of the United States of America 121 (17) (2024)
Rathanin Seng, Chalita Chomkatekaew, Sarunporn Tandhavanant, Natnaree Saiprom, Rungnapa Phunpang, Janjira Thaipadungpanit, Elizabeth M Batty, Nicholas P J Day, Wasun Chantratita, Timothy Eoin West, Nicholas R Thomson, Julian Parkhill, Claire Chewapreecha, Narisara Chantratita
Genetic diversity, determinants, and dissemination of Burkholderia pseudomallei lineages implicated in melioidosis in Northeast Thailand. Nature communications 15 (1) (2024)
Kavita De, Juan Manuel Belardinelli, Arun Prasad Pandurangan, Teddy Ehianeta, Elena Lian, Zuzana Palčeková, Ha Lam, Mercedes Gonzalez-Juarrero, Josephine M Bryant, Tom L Blundell, Julian Parkhill, R Andres Floto, Todd L Lowary, William H Wheat, Mary Jackson
Lipoarabinomannan modification as a source of phenotypic heterogeneity in host-adapted Mycobacterium abscessus isolates. Proceedings of the National Academy of Sciences of the United States of America 121 (17) (2024)
Aaron Weimann, Adam M Dinan, Christopher Ruis, Audrey Bernut, Stéphane Pont, Karen P Brown, Judy Ryan, Lúcia Santos, Louise Ellison, Emem Ukor, Arun Prasad Pandurangan, Sina Krokowski, Thomas L Blundell, Martin Welch, Beth Blane, Kim Judge, Rachel Bousfield, Nicholas M Brown, Josephine M Bryant, Irena Kukavica-Ibrulj, Giordano Rampioni, Livia Leoni, Patrick T Harrison, Sharon J Peacock, Nicholas R Thomson, Jeff Gauthier, Joanne L Fothergill, Roger C Levesque, Julian Parkhill, R Andres Floto
Evolution and host-specific adaptation of Pseudomonas aeruginosa . Science (New York, N.Y.) 385 (6704) (2024)
Aidan J Taylor, Koji Yahara, Ben Pascoe, Seungwon Ko, Leonardos Mageiros, Evangelos Mourkas, Jessica K Calland, Santeri Puranen, Matthew D Hitchings, Keith A Jolley, Carolin M Kobras, Sion Bayliss, Nicola J Williams, Arnoud H M van Vliet, Julian Parkhill, Martin Christopher James Maiden, Jukka Corander, Laurence D Hurst, Daniel Falush, Paul S Keim, Xavier Didelot, David J Kelly, Samuel K Sheppard
Epistasis, core-genome disharmony, and adaptation in recombining bacteria. mBio 15 (6) (2024)
Rathanin Seng, Chalita Chomkatekaew, Sarunporn Tandhavanant, Natnaree Saiprom, Rungnapa Phunpang, Janjira Thaipadungpanit, Elizabeth M Batty, Nicholas P J Day, Wasun Chantratita, Timothy Eoin West, Nicholas R Thomson, Julian Parkhill, Claire Chewapreecha, Narisara Chantratita
Genetic diversity, determinants, and dissemination of Burkholderia pseudomallei lineages implicated in melioidosis in Northeast Thailand. Nature communications 15 (1) (2024)
Fatemeh A Ghomi, Jakob J Jung, Gemma C Langridge, Amy K Cain, Christine J Boinett, Moataz Abd El Ghany, Derek J Pickard, Robert A Kingsley, Nicholas R Thomson, Julian Parkhill, Paul P Gardner, Lars Barquist
High-throughput transposon mutagenesis in the family Enterobacteriaceae reveals core essential genes and rapid turnover of essentiality. mBio (2024)
Aidan J Taylor, Koji Yahara, Ben Pascoe, Seungwon Ko, Leonardos Mageiros, Evangelos Mourkas, Jessica K Calland, Santeri Puranen, Matthew D Hitchings, Keith A Jolley, Carolin M Kobras, Sion Bayliss, Nicola J Williams, Arnoud H M van Vliet, Julian Parkhill, Martin Christopher James Maiden, Jukka Corander, Laurence D Hurst, Daniel Falush, Paul S Keim, Xavier Didelot, David J Kelly, Samuel K Sheppard
Epistasis, core-genome disharmony, and adaptation in recombining bacteria. mBio (2024)
Tengfei Ma, Ning Xie, Yuan Gao, Jiani Fu, Chun E Tan, Qiu E Yang, Shaolin Wang, Zhangqi Shen, Quanjiang Ji, Julian Parkhill, Congming Wu, Wang Yang, Timothy R Walsh, Jianzhong Shen
VirBR, a transcription regulator, promotes IncX3 plasmid transmission, and persistence of bla NDM-5 in zoonotic bacteria. Nature communications 15 (1) (2024)
Rathanin Seng, Chalita Chomkatekaew, Sarunporn Tandhavanant, Natnaree Saiprom, Rungnapa Phunpang, Janjira Thaipadungpanit, Elizabeth M Batty, Nicholas P J Day, Wasun Chantratita, Timothy Eoin West, Nicholas R Thomson, Julian Parkhill, Claire Chewapreecha, Narisara Chantratita
Genetic diversity, determinants, and dissemination of Burkholderia pseudomallei lineages implicated in melioidosis in Northeast Thailand. Nature communications 15 (1) (2024)
Tengfei Ma, Ning Xie, Yuan Gao, Jiani Fu, Chun E Tan, Qiu E Yang, Shaolin Wang, Zhangqi Shen, Quanjiang Ji, Julian Parkhill, Congming Wu, Wang Yang, Timothy R Walsh, Jianzhong Shen
VirBR, a transcription regulator, promotes IncX3 plasmid transmission, and persistence of bla NDM-5 in zoonotic bacteria. Nature communications 15 (1) (2024)
Rathanin Seng, Chalita Chomkatekaew, Sarunporn Tandhavanant, Natnaree Saiprom, Rungnapa Phunpang, Janjira Thaipadungpanit, Elizabeth M Batty, Nicholas P J Day, Wasun Chantratita, Timothy Eoin West, Nicholas R Thomson, Julian Parkhill, Claire Chewapreecha, Narisara Chantratita
Genetic diversity, determinants, and dissemination of Burkholderia pseudomallei lineages implicated in melioidosis in Northeast Thailand. Nature communications 15 (1) (2024)
Kavita De, Juan Manuel Belardinelli, Arun Prasad Pandurangan, Teddy Ehianeta, Elena Lian, Zuzana Palčeková, Ha Lam, Mercedes Gonzalez-Juarrero, Josephine M Bryant, Tom L Blundell, Julian Parkhill, R Andres Floto, Todd L Lowary, William H Wheat, Mary Jackson
Lipoarabinomannan modification as a source of phenotypic heterogeneity in host-adapted Mycobacterium abscessus isolates. Proceedings of the National Academy of Sciences of the United States of America 121 (17) (2024)
Tengfei Ma, Ning Xie, Yuan Gao, Jiani Fu, Chun E Tan, Qiu E Yang, Shaolin Wang, Zhangqi Shen, Quanjiang Ji, Julian Parkhill, Congming Wu, Wang Yang, Timothy R Walsh, Jianzhong Shen
VirBR, a transcription regulator, promotes IncX3 plasmid transmission, and persistence of bla NDM-5 in zoonotic bacteria. Nature communications 15 (1) (2024)
Tamim Khawaja, Tommi Mäklin, Teemu Kallonen, Rebecca A Gladstone, Anna Kaarina Pöntinen, Sointu Mero, Harry A Thorpe, Ørjan Samuelsen, Julian Parkhill, Mateen Izhar, M Waheed Akhtar, Jukka Corander, Anu Kantele
Deep sequencing of Escherichia coli exposes colonisation diversity and impact of antibiotics in Punjab, Pakistan. Nature communications 15 (1) (2024)
Aidan J Taylor, Koji Yahara, Ben Pascoe, Seungwon Ko, Leonardos Mageiros, Evangelos Mourkas, Jessica K Calland, Santeri Puranen, Matthew D Hitchings, Keith A Jolley, Carolin M Kobras, Sion Bayliss, Nicola J Williams, Arnoud H M van Vliet, Julian Parkhill, Martin Christopher James Maiden, Jukka Corander, Laurence D Hurst, Daniel Falush, Paul S Keim, Xavier Didelot, David J Kelly, Samuel K Sheppard
Epistasis, core-genome disharmony, and adaptation in recombining bacteria. mBio 15 (6) (2024)
Aaron Weimann, Adam M Dinan, Christopher Ruis, Audrey Bernut, Stéphane Pont, Karen P Brown, Judy Ryan, Lúcia Santos, Louise Ellison, Emem Ukor, Arun Prasad Pandurangan, Sina Krokowski, Thomas L Blundell, Martin Welch, Beth Blane, Kim Judge, Rachel Bousfield, Nicholas M Brown, Josephine M Bryant, Irena Kukavica-Ibrulj, Giordano Rampioni, Livia Leoni, Patrick T Harrison, Sharon J Peacock, Nicholas R Thomson, Jeff Gauthier, Joanne L Fothergill, Roger C Levesque, Julian Parkhill, R Andres Floto
Evolution and host-specific adaptation of Pseudomonas aeruginosa . Science (New York, N.Y.) 385 (6704) (2024)
Rathanin Seng, Chalita Chomkatekaew, Sarunporn Tandhavanant, Natnaree Saiprom, Rungnapa Phunpang, Janjira Thaipadungpanit, Elizabeth M Batty, Nicholas P J Day, Wasun Chantratita, Timothy Eoin West, Nicholas R Thomson, Julian Parkhill, Claire Chewapreecha, Narisara Chantratita
Genetic diversity, determinants, and dissemination of Burkholderia pseudomallei lineages implicated in melioidosis in Northeast Thailand. Nature communications 15 (1) (2024)
Aidan J Taylor, Koji Yahara, Ben Pascoe, Seungwon Ko, Leonardos Mageiros, Evangelos Mourkas, Jessica K Calland, Santeri Puranen, Matthew D Hitchings, Keith A Jolley, Carolin M Kobras, Sion Bayliss, Nicola J Williams, Arnoud H M van Vliet, Julian Parkhill, Martin Christopher James Maiden, Jukka Corander, Laurence D Hurst, Daniel Falush, Paul S Keim, Xavier Didelot, David J Kelly, Samuel K Sheppard
Epistasis, core-genome disharmony, and adaptation in recombining bacteria. mBio 15 (6) (2024)
Kavita De, Juan Manuel Belardinelli, Arun Prasad Pandurangan, Teddy Ehianeta, Elena Lian, Zuzana Palčeková, Ha Lam, Mercedes Gonzalez-Juarrero, Josephine M Bryant, Tom L Blundell, Julian Parkhill, R Andres Floto, Todd L Lowary, William H Wheat, Mary Jackson
Lipoarabinomannan modification as a source of phenotypic heterogeneity in host-adapted Mycobacterium abscessus isolates. Proceedings of the National Academy of Sciences of the United States of America 121 (17) (2024)
Tamim Khawaja, Tommi Mäklin, Teemu Kallonen, Rebecca A Gladstone, Anna Kaarina Pöntinen, Sointu Mero, Harry A Thorpe, Ørjan Samuelsen, Julian Parkhill, Mateen Izhar, M Waheed Akhtar, Jukka Corander, Anu Kantele
Deep sequencing of Escherichia coli exposes colonisation diversity and impact of antibiotics in Punjab, Pakistan. Nature communications 15 (1) (2024)
Rathanin Seng, Chalita Chomkatekaew, Sarunporn Tandhavanant, Natnaree Saiprom, Rungnapa Phunpang, Janjira Thaipadungpanit, Elizabeth M Batty, Nicholas P J Day, Wasun Chantratita, Timothy Eoin West, Nicholas R Thomson, Julian Parkhill, Claire Chewapreecha, Narisara Chantratita
Genetic diversity, determinants, and dissemination of Burkholderia pseudomallei lineages implicated in melioidosis in Northeast Thailand. Nature communications 15 (1) (2024)
Rathanin Seng, Chalita Chomkatekaew, Sarunporn Tandhavanant, Natnaree Saiprom, Rungnapa Phunpang, Janjira Thaipadungpanit, Elizabeth M Batty, Nicholas P J Day, Wasun Chantratita, Timothy Eoin West, Nicholas R Thomson, Julian Parkhill, Claire Chewapreecha, Narisara Chantratita
Genetic diversity, determinants, and dissemination of Burkholderia pseudomallei lineages implicated in melioidosis in Northeast Thailand. Nature communications 15 (1) (2024)
Tamim Khawaja, Tommi Mäklin, Teemu Kallonen, Rebecca A Gladstone, Anna Kaarina Pöntinen, Sointu Mero, Harry A Thorpe, Ørjan Samuelsen, Julian Parkhill, Mateen Izhar, M Waheed Akhtar, Jukka Corander, Anu Kantele
Deep sequencing of Escherichia coli exposes colonisation diversity and impact of antibiotics in Punjab, Pakistan. Nature communications 15 (1) (2024)
Susannah J Salter, Robyn L Marsh, Julian Parkhill
Complete Genome Sequence of Ornithobacterium hominis Type Strain MSHR-COH1 (ATCC TSD-185). Microbiology resource announcements (2023)
Jody E Phelan, Paula Josefina Gomez-Gonzalez, Nuria Andreu, Yosuke Omae, Licht Toyo-Oka, Hideki Yanai, Reiko Miyahara, Supalert Nedsuwan, Paola Florez de Sessions, Susana Campino, Neneh Sallah, Julian Parkhill, Nat Smittipat, Prasit Palittapongarnpim, Taisei Mushiroda, Michiaki Kubo, Katsushi Tokunaga, Surakameth Mahasirimongkol, Martin Lloyd Hibberd, Taane Gregory Clark
Genome-wide host-pathogen analyses reveal genetic interaction points in tuberculosis disease. Nature communications 14 (1) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Liping Li, Francesca L Short, Karl A Hassan, Varsha Naidu, Alaska Pokhrel, Stephanie S Nagy, Farzana T Prity, Bhumika S Shah, Nusrat Afrin, Stephen Baker, Julian Parkhill, Amy K Cain, Ian T Paulsen
Systematic analyses identify modes of action of ten clinically relevant biocides and antibiotic antagonism in Acinetobacter baumannii. Nature microbiology (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Kesorn Angchagun, Phumrapee Boonklang, Chalita Chomkatekaew, Sukritpong Pakdeerat, Gumphol Wongsuwan, Premjit Amornchai, Vanaporn Wuthiekanun, Salwaluk Panapipat, Thatsanun Ngernseng, Naomi Waithira, Steve Walton, Direk Limmathurotsakul, Anoree Surawong, Suwatthiya Siriboon, Parinya Chamnan, Narisara Chantratita, Susanna J Dunachie, Jukka Corander, Emma E Davenport, Julian Knight, Julian Parkhill, Sharon J Peacock, Nicholas R Thomson, Nicholas Philip John Day, Claire Chewapreecha
BurkHostGEN: a study protocol for evaluating variations in the Burkholderia pseudomallei and host genomes associated with melioidosis infection. Wellcome open research 8 (2023)
Romney M Humphries, Eugene Bragin, Julian Parkhill, Grace Morales, Jonathan E Schmitz, Paul A Rhodes
Machine-Learning Model for Prediction of Cefepime Susceptibility in Escherichia coli from Whole-Genome Sequencing Data. Journal of clinical microbiology (2023)
Juan Manuel Belardinelli, Divya Arora, Charlotte Avanzi, William H Wheat, Josephine M Bryant, John S Spencer, Tom L Blundell, Julian Parkhill, R Andres Floto, Mary Jackson
Clinically relevant mutations in the PhoR sensor kinase of host-adapted Mycobacterium abscessus isolates impact response to acidic pH and virulence. Microbiology spectrum (2023)
Romney M Humphries, Eugene Bragin, Julian Parkhill, Grace Morales, Jonathan E Schmitz, Paul A Rhodes
Machine-Learning Model for Prediction of Cefepime Susceptibility in Escherichia coli from Whole-Genome Sequencing Data. Journal of clinical microbiology 61 (3) (2023)
Ram P Maharjan, Geraldine J Sullivan, Felise G Adams, Bhumika S Shah, Jane Hawkey, Natasha Delgado, Lucie Semenec, Hue Dinh, Liping Li, Francesca L Short, Julian Parkhill, Ian T Paulsen, Lars Barquist, Bart A Eijkelkamp, Amy K Cain
DksA is a conserved master regulator of stress response in Acinetobacter baumannii. Nucleic acids research (2023)
Francesca Gaccioli, Katie Stephens, Ulla Sovio, Flora Jessop, Hilary S Wong, Susanne Lager, Emma Cook, Marcus C de Goffau, Kirsty Le Doare, Sharon J Peacock, Julian Parkhill, David Stephen Charnock-Jones, Gordon C S Smith
Placental Streptococcus agalactiae DNA is associated with neonatal unit admission and foetal pro-inflammatory cytokines in term infants. Nature microbiology 8 (12) (2023)
Jody E Phelan, Paula Josefina Gomez-Gonzalez, Nuria Andreu, Yosuke Omae, Licht Toyo-Oka, Hideki Yanai, Reiko Miyahara, Supalert Nedsuwan, Paola Florez de Sessions, Susana Campino, Neneh Sallah, Julian Parkhill, Nat Smittipat, Prasit Palittapongarnpim, Taisei Mushiroda, Michiaki Kubo, Katsushi Tokunaga, Surakameth Mahasirimongkol, Martin Lloyd Hibberd, Taane Gregory Clark
Genome-wide host-pathogen analyses reveal genetic interaction points in tuberculosis disease. Nature communications 14 (1) (2023)
Jody E Phelan, Paula Josefina Gomez-Gonzalez, Nuria Andreu, Yosuke Omae, Licht Toyo-Oka, Hideki Yanai, Reiko Miyahara, Supalert Nedsuwan, Paola Florez de Sessions, Susana Campino, Neneh Sallah, Julian Parkhill, Nat Smittipat, Prasit Palittapongarnpim, Taisei Mushiroda, Michiaki Kubo, Katsushi Tokunaga, Surakameth Mahasirimongkol, Martin Lloyd Hibberd, Taane Gregory Clark
Genome-wide host-pathogen analyses reveal genetic interaction points in tuberculosis disease. Nature communications 14 (1) (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Romney M Humphries, Eugene Bragin, Julian Parkhill, Grace Morales, Jonathan E Schmitz, Paul A Rhodes
Machine-Learning Model for Prediction of Cefepime Susceptibility in Escherichia coli from Whole-Genome Sequencing Data. Journal of clinical microbiology 61 (3) (2023)
Rathanin Seng, Chalita Chomkatekaew, Sarunporn Tandhavanant, Natnaree Saiprom, Rungnapa Phunpang, Janjira Thaipadungpanit, Elizabeth M Batty, Nicholas Pj Day, Wasun Chantratita, T Eoin West, Nicholas R Thomson, Julian Parkhill, Claire Chewapreecha, Narisara Chantratita
Genetic diversity, determinants, and dissemination of Burkholderia pseudomallei lineages implicated in melioidosis in northeast Thailand. bioRxiv : the preprint server for biology (2023)
Katherine M Kennedy, Marcus C de Goffau, Maria Elisa Perez-Munoz, Marie-Claire Arrieta, Fredrik Bäckhed, Peer Bork, Thorsten Braun, Frederic D Bushman, Joel Dore, Willem M de Vos, Ashlee M Earl, Jonathan A Eisen, Michal A Elovitz, Stephanie Christine Ganal-Vonarburg, Michael G Gaenzle, Wendy S Garrett, Lindsay J Hall, Mathias W Hornef, Curtis Huttenhower, Liza Konnikova, Sarah Lebeer, Andrew J Macpherson, Ruth C Massey, Alice Carolyn McHardy, Omry Koren, Trevor D Lawley, Ruth E Ley, Corina M Berset, Paul W O' Toole, Eric G Pamer, Julian Parkhill, Jeroen Raes, Thomas Rattei, Anne Salonen, Eran Segal, Nicola Segata, Fergus Shanahan, Deborah M Sloboda, Gordon C S Smith, Harry Sokol, Timothy D Spector, Michael G Surette, Gerald W Tannock, Alan William Walker, Moran Yassour, Jens Walter
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature 613 (7945) (2023)
Rathanin Seng, Chalita Chomkatekaew, Sarunporn Tandhavanant, Natnaree Saiprom, Rungnapa Phunpang, Janjira Thaipadungpanit, Elizabeth M Batty, Nicholas Pj Day, Wasun Chantratita, T Eoin West, Nicholas R Thomson, Julian Parkhill, Claire Chewapreecha, Narisara Chantratita
Genetic diversity, determinants, and dissemination of Burkholderia pseudomallei lineages implicated in melioidosis in northeast Thailand. bioRxiv : the preprint server for biology (2023)
Rathanin Seng, Chalita Chomkatekaew, Sarunporn Tandhavanant, Natnaree Saiprom, Rungnapa Phunpang, Janjira Thaipadungpanit, Elizabeth M Batty, Nicholas Pj Day, Wasun Chantratita, T Eoin West, Nicholas R Thomson, Julian Parkhill, Claire Chewapreecha, Narisara Chantratita
Genetic diversity, determinants, and dissemination of Burkholderia pseudomallei lineages implicated in melioidosis in northeast Thailand. bioRxiv : the preprint server for biology (2023)
Jody E Phelan, Paula Josefina Gomez-Gonzalez, Nuria Andreu, Yosuke Omae, Licht Toyo-Oka, Hideki Yanai, Reiko Miyahara, Supalert Nedsuwan, Paola Florez de Sessions, Susana Campino, Neneh Sallah, Julian Parkhill, Nat Smittipat, Prasit Palittapongarnpim, Taisei Mushiroda, Michiaki Kubo, Katsushi Tokunaga, Surakameth Mahasirimongkol, Martin Lloyd Hibberd, Taane Gregory Clark
Genome-wide host-pathogen analyses reveal genetic interaction points in tuberculosis disease. Nature communications 14 (1) (2023)
Jody E Phelan, Paula Josefina Gomez-Gonzalez, Nuria Andreu, Yosuke Omae, Licht Toyo-Oka, Hideki Yanai, Reiko Miyahara, Supalert Nedsuwan, Paola Florez de Sessions, Susana Campino, Neneh Sallah, Julian Parkhill, Nat Smittipat, Prasit Palittapongarnpim, Taisei Mushiroda, Michiaki Kubo, Katsushi Tokunaga, Surakameth Mahasirimongkol, Martin Lloyd Hibberd, Taane Gregory Clark
Genome-wide host-pathogen analyses reveal genetic interaction points in tuberculosis disease. Nature communications 14 (1) (2023)
Rathanin Seng, Chalita Chomkatekaew, Sarunporn Tandhavanant, Natnaree Saiprom, Rungnapa Phunpang, Janjira Thaipadungpanit, Elizabeth M Batty, Nicholas Pj Day, Wasun Chantratita, T Eoin West, Nicholas R Thomson, Julian Parkhill, Claire Chewapreecha, Narisara Chantratita
Genetic diversity, determinants, and dissemination of Burkholderia pseudomallei lineages implicated in melioidosis in northeast Thailand. bioRxiv : the preprint server for biology (2023)
Christopher Ruis, Aaron Weimann, Gerry Tonkin-Hill, Arun Prasad Pandurangan, Marta Matuszewska, Gemma G R Murray, Roger C Levesque, Thomas L Blundell, R Andres Floto, Julian Parkhill
Mutational spectra are associated with bacterial niche. Nature communications 14 (1) (2023)
Romney M Humphries, Eugene Bragin, Julian Parkhill, Grace Morales, Jonathan E Schmitz, Paul A Rhodes
Machine-Learning Model for Prediction of Cefepime Susceptibility in Escherichia coli from Whole-Genome Sequencing Data. Journal of clinical microbiology 61 (3) (2023)
Jesper Larsen, Claire L Raisen, Xiaoliang Ba, Nicholas J Sadgrove, Guillermo Federico Padilla-González, Monique S J Simmonds, Igor Loncaric, Heidrun Kerschner, Petra Apfalter, Rainer Hartl, Ariane Deplano, Stien Vandendriessche, Barbora Černá Bolfíková, Pavel Hulva, Maiken C Arendrup, Rasmus K Hare, Céline Barnadas, Marc Stegger, Raphael N Sieber, Robert Leo Skov, Andreas Petersen, Øystein Angen, Sophie Lund Rasmussen, Carmen Espinosa-Gongora, Frank Møller Aarestrup, Laura J Lindholm, Suvi M Nykäsenoja, Frederic Laurent, Karsten Becker, Birgit Walther, Corinna Kehrenberg, Christiane Cuny, Franziska Layer, Guido Werner, Wolfgang Witte, Ivonne Stamm, Paolo Moroni, Hannah J Jørgensen, Herminia de Lencastre, Emilia Cercenado, Fernando García-Garrote, Stefan Börjesson, Sara Hæggman, Vincent Perreten, Christopher J Teale, Andrew S Waller, Bruno Pichon, Martin D Curran, Matthew J Ellington, John J Welch, Sharon J Peacock, David J Seilly, Fiona J E Morgan, Julian Parkhill, Nazreen F Hadjirin, Jodi A Lindsay, Matthew T G Holden, Giles F Edwards, Geoffrey Foster, Gavin K Paterson, Xavier Didelot, Mark A Holmes, Ewan M Harrison, Anders R Larsen
Emergence of methicillin resistance predates the clinical use of antibiotics. Nature 602 (7895) (2022)
Francesc Coll, Theodore Gouliouris, Sebastian Bruchmann, Jody E Phelan, Kathy E Raven, Taane Gregory Clark, Julian Parkhill, Sharon J Peacock
PowerBacGWAS: a computational pipeline to perform power calculations for bacterial genome-wide association studies. Communications biology 5 (1) (2022)
Siva Kumar Shanmugam, Narender Kumar, Tamilzhalagan Sembulingam, Suresh Babu Ramalingam, Ashok Selvaraj, Udhayakumar Rajendhiran, Sudha Solaiyappan, Srikanth P Tripathy, Mohan Natrajan, Padmapriyadarsini Chandrasekaran, Soumya Swaminathan, Julian Parkhill, Sharon J Peacock, Uma Devi K Ranganathan
Mycobacterium tuberculosis Lineages Associated with Mutations and Drug Resistance in Isolates from India. Microbiology spectrum 10 (3) (2022)
Lucas Boeck, Sophie Burbaud, Marcin J Skwark, Will H Pearson, Jasper Sangen, Andreas W Wuest, Eleanor K P Marshall, Aaron Weimann, Isobel Everall, Josephine M Bryant, Sony Malhotra, Bridget P Bannerman, Katrin Kierdorf, Tom L Blundell, Marc S Dionne, Julian Parkhill, R Andres Floto
Mycobacterium abscessus pathogenesis identified by phenogenomic analyses. Nature microbiology 7 (9) (2022)
Janine Zara Bowring, Yue Su, Ahlam Alsaadi, Sine L Svenningsen, Julian Parkhill, Hanne Ingmer
Screening for Highly Transduced Genes in Staphylococcus aureus Revealed Both Lateral and Specialized Transduction. Microbiology spectrum 10 (1) (2022)
Kathy E Raven, Eugene Bragin, Beth Blane, Danielle Leek, Narender Kumar, Paul A Rhodes, David A Enoch, Rachel Thaxter, Nicholas M Brown, Julian Parkhill, Sharon J Peacock
Large-Scale Evaluation of a Rapid Fully Automated Analysis Platform to Detect and Refute Outbreaks Based on MRSA Genome Comparisons. mSphere (2022)
Sara Frosth, Ellen Ruth A Morris, Hayley J Brodrick, Lars Frykberg, Karin Jacobsson, Julian Parkhill, Jan-Ingmar Flock, Tim Wood, Bengt Guss, David M Aanensen, Ashley G Boyle, Miia Riihimäki, Noah D Cohen, Andrew S Waller
Conservation of vaccine antigen sequences encoded by sequenced strains of Streptococcus equi subsp. equi. Equine veterinary journal (2022)
Noémie Lefrancq, Valérie Bouchez, Nadia Fernandes, Alex-Mikael Barkoff, Thijs Bosch, Tine Dalby, Thomas Åkerlund, Jessica Darenberg, Katerina Fabianova, Didrik F Vestrheim, Norman K Fry, Juan José González-López, Karolina Gullsby, Adele Habington, Qiushui He, David J Litt, Helena Martini, Denis Piérard, Paola Stefanelli, Marc Stegger, Jana Zavadilova, Nathalie Armatys, Annie Landier, Sophie Guillot, Samuel Leandro Hong, Philippe Lemey, Julian Parkhill, Julie Toubiana, Simon Cauchemez, Henrik Salje, Sylvain Brisse
Global spatial dynamics and vaccine-induced fitness changes of Bordetella pertussis . Science translational medicine 14 (642) (2022)
Anna Kaarina Pöntinen, Janetta Top, Sergio Arredondo-Alonso, Gerry Tonkin-Hill, Ana R Freitas, Carla Novais, Rebecca A Gladstone, Maiju E Pesonen, Rodrigo Meneses, Henri Pesonen, John A Lees, Dorota Jamrozy, Stephen D Bentley, Val F Lanza, Carmen Torres, Luisa Peixe, Teresa M Coque, Julian Parkhill, Anita C Schürch, Rob J L Willems, Jukka Corander
Apparent nosocomial adaptation of Enterococcus faecalis predates the modern hospital era. Nature communications 12 (1) (2021)
Mark Achtman, Zhemin Zhou, Nabil-Fareed Alikhan, William Tyne, Julian Parkhill, Martin Cormican, Chien-Shun Chiou, Mia Torpdahl, Eva Litrup, Deirdre M Prendergast, John E Moore, Sam Strain, Christian Kornschober, Richard J Meinersmann, Alexandra Uesbeck, François-Xavier Weill, Aidan Coffey, Helene Andrews-Polymenis, Roy Curtiss Rd, Séamus Fanning
Genomic diversity of Salmonella enterica -The UoWUCC 10K genomes project. Wellcome open research 5 (2021)
Marcus C de Goffau, Amadou T Jallow, Chilel Sanyang, Andrew M Prentice, Niamh Meagher, David J Price, Peter A Revill, Julian Parkhill, Dora I A Pereira, Josef Wagner
Gut microbiomes from Gambian infants reveal the development of a non-industrialized Prevotella-based trophic network. Nature microbiology 7 (1) (2021)
Jo Dicks, Jake D Turnbull, Julie Russell, Julian Parkhill, Sarah Alexander
Genome Sequencing of a Historic Staphylococcus aureus Collection Reveals New Enterotoxin Genes and Sheds Light on the Evolution and Genomic Organization of This Key Virulence Gene Family. Journal of bacteriology 203 (10) (2021)
Laura M Nolan, Amy K Cain, Thomas Clamens, R Christopher D Furniss, Eleni Manoli, Maria A Sainz-Polo, Gordon Dougan, David Albesa-Jové, Julian Parkhill, Despoina A I Mavridou, Alain Filloux
Identification of Tse8 as a Type VI secretion system toxin from Pseudomonas aeruginosa that targets the bacterial transamidosome to inhibit protein synthesis in prey cells. Nature microbiology 6 (9) (2021)
Josephine M Bryant, Karen P Brown, Sophie Burbaud, Isobel Everall, Juan Manuel Belardinelli, Daniela Rodriguez-Rincon, Dorothy M Grogono, Chelsea M Peterson, Deepshikha Verma, Ieuan E S Evans, Christopher Ruis, Aaron Weimann, Divya Arora, Sony Malhotra, Bridget P Bannerman, Charlotte Passemar, Kerra Templeton, Gordon MacGregor, Kasim Jiwa, Andrew J Fisher, Thomas L Blundell, Diane J Ordway, Mary Jackson, Julian Parkhill, R Andres Floto
Stepwise pathogenic evolution of Mycobacterium abscessus. Science (New York, N.Y.) 372 (6541) (2021)
Andries J van Tonder, Mark J Thornton, Andrew James Kerr Conlan, Keith A Jolley, Lee Goolding, Andrew P Mitchell, James Dale, Eleftheria Palkopoulou, Philip J Hogarth, R Glyn Hewinson, James L N Wood, Julian Parkhill
Inferring Mycobacterium bovis transmission between cattle and badgers using isolates from the Randomised Badger Culling Trial. PLoS pathogens 17 (11) (2021)
Brekhna Hassan, Muhammad Ijaz, Asadullah Khan, Kirsty Sands, Georgios-Ion Serfas, Liam Clayfield, Maisra Mohammed El-Bouseary, Giulia Lai, Edward Portal, Afifah Khan, William J Watkins, Julian Parkhill, Timothy Rutland Walsh
A role for arthropods as vectors of multidrug-resistant Enterobacterales in surgical site infections from South Asia. Nature microbiology 6 (10) (2021)
Christopher Ruis, Josephine M Bryant, Scott Cameron Bell, Rachel M Thomson, Rebecca M Davidson, Nabeeh A Hasan, Jakko van Ingen, Michael Strong, R Andres Floto, Julian Parkhill
Dissemination of Mycobacterium abscessus via global transmission networks. Nature microbiology 6 (10) (2021)
Matthew J Dorman, Daryl Domman, Tomás Javier Poklepovich, Charlotte Tolley, Gisella Zolezzi, Leanne Kane, María Rosa Viñas, Marcela Panagópulo, Miriam Moroni, Norma Binsztein, María Inés Caffer, Simon Clare, Gordon Dougan, George P C Salmond, Julian Parkhill, Josefina Campos, Nicholas R Thomson
Genomics of the Argentinian cholera epidemic elucidate the contrasting dynamics of epidemic and endemic Vibrio cholerae. Nature communications 11 (1) (2020)
Francesca L Short, Gianna Di Sario, Nathalie T Reichmann, Colin Kleanthous, Julian Parkhill, Peter W Taylor
Genomic Profiling Reveals Distinct Routes To Complement Resistance in Klebsiella pneumoniae. Infection and immunity 88 (8) (2020)
Evangelos Mourkas, Aidan J Taylor, Guillaume Méric, Sion C Bayliss, Ben Pascoe, Leonardos Mageiros, Jessica K Calland, Matthew D Hitchings, Anne Ridley, Ana Vidal, Ken J Forbes, Norval J C Strachan, Craig T Parker, Julian Parkhill, Keith A Jolley, Alison J Cody, Martin Christopher James Maiden, David J Kelly, Samuel K Sheppard
Agricultural intensification and the evolution of host specialism in the enteric pathogen Campylobacter jejuni. Proceedings of the National Academy of Sciences of the United States of America 117 (20) (2020)
Sophia David, Victoria Cohen, Sandra Reuter, Anna E Sheppard, Tommaso Giani, Julian Parkhill, null null, null null, Gian Maria Rossolini, Edward J Feil, Hajo Grundmann, David M Aanensen
Integrated chromosomal and plasmid sequence analyses reveal diverse modes of carbapenemase gene spread among Klebsiella pneumoniae. Proceedings of the National Academy of Sciences of the United States of America 117 (40) (2020)
Dorota Jamrozy, Merijn W Bijlsma, Marcus C de Goffau, Diederik van de Beek, Taco W Kuijpers, Julian Parkhill, Arie van der Ende, Stephen D Bentley
Increasing incidence of group B streptococcus neonatal infections in the Netherlands is associated with clonal expansion of CC17 and CC23. Scientific reports 10 (1) (2020)
Shui Ping Wang, Luis A Rubio, Sylvia H Duncan, Gillian E Donachie, Grietje Holtrop, Galiana Lo, Freda M Farquharson, Josef Wagner, Julian Parkhill, Petra Louis, Alan William Walker, Harry J Flint
Pivotal Roles for pH, Lactate, and Lactate-Utilizing Bacteria in the Stability of a Human Colonic Microbial Ecosystem. mSystems 5 (5) (2020)
John A Lees, T Tien Mai, Marco Galardini, Nicole E Wheeler, Samuel T Horsfield, Julian Parkhill, Jukka Corander
Improved Prediction of Bacterial Genotype-Phenotype Associations Using Interpretable Pangenome-Spanning Regressions. mBio 11 (4) (2020)
Alex J Mullins, Cerith Jones, Matthew J Bull, Gordon Webster, Julian Parkhill, Thomas Richard Connor, James A H Murray, Gregory L Challis, Eshwar Mahenthiralingam
Genomic Assemblies of Members of Burkholderia and Related Genera as a Resource for Natural Product Discovery. Microbiology resource announcements 9 (42) (2020)
Amy K Cain, Lars Barquist, Andrew L Goodman, Ian T Paulsen, Julian Parkhill, Tim van Opijnen
A decade of advances in transposon-insertion sequencing. Nature reviews. Genetics 21 (9) (2020)
Mark Achtman, Zhemin Zhou, Nabil-Fareed Alikhan, William Tyne, Julian Parkhill, Martin Cormican, Chien-Shun Chiou, Mia Torpdahl, Eva Litrup, Deirdre M Prendergast, John E Moore, Sam Strain, Christian Kornschober, Richard J Meinersmann, Alexandra Uesbeck, François-Xavier Weill, Aidan Coffey, Helene Andrews-Polymenis, Roy Curtiss Rd, Séamus Fanning
Genomic diversity of Salmonella enterica -The UoWUCC 10K genomes project. Wellcome open research 5 (2020)
C Coral Dominguez-Medina, Nicola L Rash, Sylvain Robillard, Carl Robinson, Androulla Efstratiou, Karen Broughton, Julian Parkhill, Matthew T G Holden, María Rocío López-Álvarez, Romain Paillot, Andrew S Waller
SpeS: A Novel Superantigen and Its Potential as a Vaccine Adjuvant against Strangles. International journal of molecular sciences 21 (12) (2020)
Elisa Venturini, Sarah L Svensson, Sandra Maaß, Rick Gelhausen, Florian Eggenhofer, Lei Li, Amy K Cain, Julian Parkhill, Dörte Becher, Rolf Backofen, Lars Barquist, Cynthia Mira Sharma, Alexander J Westermann, Jörg Vogel
A global data-driven census of Salmonella small proteins and their potential functions in bacterial virulence. microLife 1 (1) (2020)
Francesca Gaccioli, Susanne Lager, Marcus C de Goffau, Ulla Sovio, Justyna Dopierala, Sungsam Gong, Emma Cook, Andrew Sharkey, Ashley Moffett, Wai Kwong Lee, Christian Delles, Cristina Venturini, Judith Breuer, Julian Parkhill, Sharon J Peacock, David Stephen Charnock-Jones, Gordon C S Smith
Fetal inheritance of chromosomally integrated human herpesvirus 6 predisposes the mother to pre-eclampsia. Nature microbiology 5 (7) (2020)
Joleen Masschelein, Paulina K Sydor, Christian Hobson, Rhiannon Howe, Cerith Jones, Douglas M Roberts, Zhong Ling Yap, Julian Parkhill, Eshwar Mahenthiralingam, Gregory L Challis
A dual transacylation mechanism for polyketide synthase chain release in enacyloxin antibiotic biosynthesis. Nature chemistry 11 (10) (2019)
Jake D Turnbull, Julie E Russell, Mohammed-Abbas Fazal, Nicholas E Grayson, Ana Deheer-Graham, Karen Oliver, Nancy Holroyd, Julian Parkhill, Sarah Alexander
Whole-Genome Sequences of Five Strains of Kocuria rosea, NCTC2676, NCTC7514, NCTC7512, NCTC7528, and NCTC7511. Microbiology resource announcements 8 (44) (2019)
Nicholas M Brown, Beth Blane, Kathy E Raven, Narender Kumar, Danielle Leek, Eugene Bragin, Paul A Rhodes, David A Enoch, Rachel Thaxter, Julian Parkhill, Sharon J Peacock
Pilot Evaluation of a Fully Automated Bioinformatics System for Analysis of Methicillin-Resistant Staphylococcus aureus Genomes and Detection of Outbreaks. Journal of clinical microbiology 57 (11) (2019)
Catherine Ludden, Kathy E Raven, Dorota Jamrozy, Theodore Gouliouris, Beth Blane, Francesc Coll, Marcus de Goffau, Plamena Naydenova, Carolyne Horner, Juan Hernandez-Garcia, Paul Wood, Nazreen Hadjirin, Milorad Radakovic, Nicholas M Brown, Mark Holmes, Julian Parkhill, Sharon J Peacock
One Health Genomic Surveillance of Escherichia coli Demonstrates Distinct Lineages and Mobile Genetic Elements in Isolates from Humans versus Livestock. mBio 10 (1) (2019)
Leonor Sánchez-Busó, Daniel Golparian, Jukka Corander, Yonatan Hagai Grad, Makoto Ohnishi, Rebecca Flemming, Julian Parkhill, Stephen D Bentley, Magnus Unemo, Simon R Harris
The impact of antimicrobials on gonococcal evolution. Nature microbiology 4 (11) (2019)
Claire Chewapreecha, Alison E Mather, Simon R Harris, Martin Hunt, Matthew T G Holden, Chutima Chaichana, Vanaporn Wuthiekanun, Gordon Dougan, Nicholas P J Day, Direk Limmathurotsakul, Julian Parkhill, Sharon J Peacock
Genetic variation associated with infection and the environment in the accidental pathogen Burkholderia pseudomallei. Communications biology 2 (2019)
Mark R Davies, Liam McIntyre, Ankur Mutreja, Jake A Lacey, John A Lees, Rebecca J Towers, Sebastián Duchêne, Pierre R Smeesters, Hannah R Frost, David J Price, Matthew T G Holden, Sophia David, Philip M Giffard, Kate A Worthing, Anna C Seale, James Alexander Berkley, Simon R Harris, Tania Rivera-Hernandez, Olga Berking, Amanda J Cork, Rosângela S L A Torres, Trevor Lithgow, Richard A Strugnell, Rene Bergmann, Patric Nitsche-Schmitz, Gusharan S Chhatwal, Stephen D Bentley, John D Fraser, Nicole J Moreland, Jonathan R Carapetis, Andrew C Steer, Julian Parkhill, Allan Saul, Deborah A Williamson, Bart J Currie, Steven Y C Tong, Gordon Dougan, Mark J Walker
Atlas of group A streptococcal vaccine candidates compiled using large-scale comparative genomics. Nature genetics 51 (6) (2019)
Mohammed-Abbas Fazal, Sarah Alexander, Nicholas E Grayson, Ana Deheer-Graham, Karen Oliver, Nancy Holroyd, Julian Parkhill, Julie E Russell
Complete Whole-Genome Sequences of Two Raoultella terrigena Strains, NCTC 13097 and NCTC 13098, Isolated from Human Cases. Microbiology resource announcements 8 (27) (2019)
Matthew Jenner, Xinyun Jian, Yousef Dashti, Joleen Masschelein, Christian Hobson, Douglas M Roberts, Cerith Jones, Simon R Harris, Julian Parkhill, Huzefa A Raja, Nicholas H Oberliels, Cedric J Pearce, Eshwar Mahenthiralingam, Gregory L Challis
An unusual Burkholderia gladioli double chain-initiating nonribosomal peptide synthetase assembles 'fungal' icosalide antibiotics. Chemical science 10 (21) (2019)
Asma Munir, Narender Kumar, Suresh Babu Ramalingam, Sembulingam Tamilzhalagan, Siva Kumar Shanmugam, Alangudi Natarajan Palaniappan, Dina Nair, Padma Priyadarshini, Mohan Natarajan, Srikanth Tripathy, Uma Devi Ranganathan, Sharon J Peacock, Julian Parkhill, Thomas L Blundell, Sony Malhotra
Identification and Characterization of Genetic Determinants of Isoniazid and Rifampicin Resistance in Mycobacterium tuberculosis in Southern India. Scientific reports 9 (1) (2019)
Arun Gonzales Decano, Catherine Ludden, Theresa Feltwell, Kim Judge, Julian Parkhill, Tim Downing
Complete Assembly of Escherichia coli Sequence Type 131 Genomes Using Long Reads Demonstrates Antibiotic Resistance Gene Variation within Diverse Plasmid and Chromosomal Contexts. mSphere 4 (3) (2019)
Álvaro Chiner-Oms, Michael Berney, Christine Boinett, Fernando Gonzáles-Candelas, Douglas B Young, Sebastien Gagneux, William R Jacobs, Julian Parkhill, Teresa Cortes, Iñaki Comas
Genome-wide mutational biases fuel transcriptional diversity in the Mycobacterium tuberculosis complex. Nature communications 10 (1) (2019)
John A Lees, Bart Ferwerda, Philip H C Kremer, Nicole E Wheeler, Mercedes Valls Serón, Nicholas J Croucher, Rebecca A Gladstone, Hester J Bootsma, Nynke Y Rots, Alienke J Wijmega-Monsuur, Elisabeth A M Sanders, Krzysztof Trzciński, Anne L Wyllie, Aeilko H Zwinderman, Leonard H van den Berg, Wouter Van Rheenen, Jan H Veldink, Zitta B Harboe, Lene F Lundbo, Lisette C P G M de Groot, Natasja M van Schoor, Nathalie van der Velde, Lars H Ängquist, Thorkild I A Sørensen, Ellen A Nohr, Alexander J Mentzer, Tara C Mills, Julian C Knight, Mignon du Plessis, Susan Nzenze, Jeffrey N Weiser, Julian Parkhill, Shabir Madhi, Thomas Benfield, Anne von Gottberg, Arie van der Ende, Matthijs C Brouwer, Jeffrey C Barrett, Stephen D Bentley, Diederik van de Beek
Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis. Nature communications 10 (1) (2019)
Leonor Sánchez-Busó, Daniel Golparian, Julian Parkhill, Magnus Unemo, Simon R Harris
Genetic variation regulates the activation and specificity of Restriction-Modification systems in Neisseria gonorrhoeae. Scientific reports 9 (1) (2019)
Gordon Webster, Alex J Mullins, Aimee S Bettridge, Cerith Jones, Edward Cunningham-Oakes, Thomas Richard Connor, Julian Parkhill, Eshwar Mahenthiralingam
The Genome Sequences of Three Paraburkholderia sp. Strains Isolated from Wood-Decay Fungi Reveal Them as Novel Species with Antimicrobial Biosynthetic Potential. Microbiology resource announcements 8 (34) (2019)
Eike J Steinig, Sebastian Duchene, D Ashley Robinson, Stefan Monecke, Maho Yokoyama, Maisem Laabei, Peter Slickers, Patiyan Andersson, Deborah Ann Williamson, Angela Kearns, Richard V Goering, Elizabeth Dickson, Ralf Ehricht, Margaret Ip, Matthew V N O'Sullivan, Geoffrey W Coombs, Andreas Petersen, Grainne Brennan, Anna C Shore, David C Coleman, Annalisa Pantosti, Herminia de Lencastre, Henrik Westh, Nobumichi Kobayashi, Helen Heffernan, Birgit Strommenger, Franziska Layer, Stefan Weber, Hege Vangstein Aamot, Leila Skakni, Sharon J Peacock, Derek Sarovich, Simon Harris, Julian Parkhill, Ruth C Massey, Matthew T G Holden, Stephen D Bentley, Steven Y C Tong
Evolution and Global Transmission of a Multidrug-Resistant, Community-Associated Methicillin-Resistant Staphylococcus aureus Lineage from the Indian Subcontinent. mBio 10 (6) (2019)
Kathy E Raven, Beth Blane, Danielle Leek, Carol Churcher, Paula Kokko-Gonzales, Dhamayanthi Pugazhendhi, Louise Fraser, Jason Betley, Julian Parkhill, Sharon J Peacock
Methodology for Whole-Genome Sequencing of Methicillin-Resistant Staphylococcus aureus Isolates in a Routine Hospital Microbiology Laboratory. Journal of clinical microbiology 57 (6) (2019)
Ewan M Harrison, Xiaoliang Ba, Francesc Coll, Beth Blane, Olivier Restif, Henry Carvell, Claudio Umberto Köser, Dorota Jamrozy, Sandra Reuter, Andrew Lovering, Nicholas Gleadall, Katherine L Bellis, Anne-Catrin Uhlemann, Franklin D Lowy, Ruth C Massey, Inês R Grilo, Rita Sobral, Jesper Larsen, Anders Rhod Larsen, Carina Vingsbo Lundberg, Julian Parkhill, Gavin K Paterson, Matthew T G Holden, Sharon J Peacock, Mark A Holmes
Genomic identification of cryptic susceptibility to penicillins and β-lactamase inhibitors in methicillin-resistant Staphylococcus aureus. Nature microbiology 4 (10) (2019)
Mohammed-Abbas Fazal, Sarah Alexander, Nicholas E Grayson, Ana Deheer-Graham, Karen Oliver, Nancy Holroyd, Julian Parkhill, Julie E Russell
Complete Whole-Genome Sequence of Haemophilus haemolyticus NCTC 10839. Microbiology resource announcements 8 (25) (2019)

Julian Parkhill.css-eqlu8i{font-size:small;padding-left:4px;} (J Parkhill)

Publication Activity (10 Years)

Top Topics

Top Venues

Julian Parkhill (J Parkhill)