Mark Basham

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 23

Top Topics

Convolutional Neural Network

Machine Learning

Top Venues

Acta crystallographica. Section D, Structural biology

Nature reviews. Immunology

Journal of applied crystallography

This page only lists publications with an associated author ORCID identifier.

Publications

James M Parkhurst, Trond Varslot, Maud Dumoux, C Alistair Siebert, Michele Darrow, Mark Basham, Angus Kirkland, Michael Grange, Gwyndaf Evans, James H Naismith
Pillar data-acquisition strategies for cryo-electron tomography of beam-sensitive biological samples. Acta crystallographica. Section D, Structural biology 80 (Pt 6) (2024)
Yishun Lu, Ramona Duman, James Beilsten-Edmands, Graeme Winter, Mark Basham, Gwyndaf Evans, Jos J A G Kamps, Allen M Orville, Hok-Sau Kwong, Konstantinos Beis, Wesley Armour, Armin Wagner
Ray-tracing analytical absorption correction for X-ray crystallography based on tomographic reconstructions. Journal of applied crystallography 57 (Pt 3) (2024)
James M Parkhurst, Trond Varslot, Maud Dumoux, C Alistair Siebert, Michele Darrow, Mark Basham, Angus Kirkland, Michael Grange, Gwyndaf Evans, James H Naismith
Pillar data-acquisition strategies for cryo-electron tomography of beam-sensitive biological samples. Acta crystallographica. Section D, Structural biology 80 (Pt 6) (2024)
James M Parkhurst, Trond Varslot, Maud Dumoux, C Alistair Siebert, Michele Darrow, Mark Basham, Angus Kirkland, Michael Grange, Gwyndaf Evans, James H Naismith
Pillar data-acquisition strategies for cryo-electron tomography of beam-sensitive biological samples. Acta crystallographica. Section D, Structural biology (2024)
James M Parkhurst, Trond Varslot, Maud Dumoux, C Alistair Siebert, Michele Darrow, Mark Basham, Angus Kirkland, Michael Grange, Gwyndaf Evans, James H Naismith
Pillar data-acquisition strategies for cryo-electron tomography of beam-sensitive biological samples. Acta crystallographica. Section D, Structural biology 80 (Pt 6) (2024)
Yishun Lu, Ramona Duman, James Beilsten-Edmands, Graeme Winter, Mark Basham, Gwyndaf Evans, Jos J A G Kamps, Allen M Orville, Hok-Sau Kwong, Konstantinos Beis, Wesley Armour, Armin Wagner
Ray-tracing analytical absorption correction for X-ray crystallography based on tomographic reconstructions. Journal of applied crystallography 57 (Pt 3) (2024)
James M Parkhurst, Trond Varslot, Maud Dumoux, C Alistair Siebert, Michele Darrow, Mark Basham, Angus Kirkland, Michael Grange, Gwyndaf Evans, James H Naismith
Pillar data-acquisition strategies for cryo-electron tomography of beam-sensitive biological samples. Acta crystallographica. Section D, Structural biology 80 (Pt 6) (2024)
Neville B Y Yee, Elaine M L Ho, Win Tun, Jake L R Smith, Maud Dumoux, Michael Grange, Michele C Darrow, Mark Basham
Ot2Rec: A semi-automatic, extensible, multi-software tomographic reconstruction workflow. Biological imaging 3 (2023)
Maud Dumoux, Thomas Glen, Jake L R Smith, Elaine M L Ho, Luis M A Perdigão, Avery Pennington, Sven Klumpe, Neville B Y Yee, David Andrew Farmer, Pui Y A Lai, William Bowles, Ron Kelley, Juergen M Plitzko, Liang Wu, Mark Basham, Daniel K Clare, C Alistair Siebert, Michele C Darrow, James H Naismith, Michael Grange
Cryo-plasma FIB/SEM volume imaging of biological specimens. eLife 12 (2023)
Dan Hudson, Ricardo A Fernandes, Mark Basham, Graham Ogg, Hashem Koohy
Can we predict T cell specificity with digital biology and machine learning? Nature reviews. Immunology (2023)
Dan Hudson, Ricardo A Fernandes, Mark Basham, Graham Ogg, Hashem Koohy
Can we predict T cell specificity with digital biology and machine learning? Nature reviews. Immunology (2023)
Maud Dumoux, Thomas Glen, Jake L R Smith, Elaine M L Ho, Luis M A Perdigão, Avery Pennington, Sven Klumpe, Neville B Y Yee, David Andrew Farmer, Pui Y A Lai, William Bowles, Ron Kelley, Juergen M Plitzko, Liang Wu, Mark Basham, Daniel K Clare, C Alistair Siebert, Michele C Darrow, James H Naismith, Michael Grange
Cryo-plasma FIB/SEM volume imaging of biological specimens. eLife 12 (2023)
Maud Dumoux, Thomas Glen, Jake L R Smith, Elaine M L Ho, Luis M A Perdigão, Avery Pennington, Sven Klumpe, Neville B Y Yee, David Andrew Farmer, Pui Y A Lai, William Bowles, Ron Kelley, Juergen M Plitzko, Liang Wu, Mark Basham, Daniel K Clare, C Alistair Siebert, Michele C Darrow, James H Naismith, Michael Grange
Cryo-plasma FIB/SEM volume imaging of biological specimens. eLife 12 (2023)
Dan Hudson, Ricardo A Fernandes, Mark Basham, Graham Ogg, Hashem Koohy
Can we predict T cell specificity with digital biology and machine learning? Nature reviews. Immunology (2023)
Maud Dumoux, Thomas Glen, Jake L R Smith, Elaine M L Ho, Luis M A Perdigão, Avery Pennington, Sven Klumpe, Neville B Y Yee, David Andrew Farmer, Pui Y A Lai, William Bowles, Ron Kelley, Juergen M Plitzko, Liang Wu, Mark Basham, Daniel K Clare, C Alistair Siebert, Michele C Darrow, James H Naismith, Michael Grange
Cryo-plasma FIB/SEM volume imaging of biological specimens. eLife 12 (2023)
Dan Hudson, Ricardo A Fernandes, Mark Basham, Graham Ogg, Hashem Koohy
Can we predict T cell specificity with digital biology and machine learning? Nature reviews. Immunology (2023)
Maud Dumoux, Thomas Glen, Jake L R Smith, Elaine M L Ho, Luis M A Perdigão, Avery Pennington, Sven Klumpe, Neville B Y Yee, David Andrew Farmer, Pui Y A Lai, William Bowles, Ron Kelley, Juergen M Plitzko, Liang Wu, Mark Basham, Daniel K Clare, C Alistair Siebert, Michele C Darrow, James H Naismith, Michael Grange
Cryo-plasma FIB/SEM volume imaging of biological specimens. eLife 12 (2023)
Dan Hudson, Ricardo A Fernandes, Mark Basham, Graham Ogg, Hashem Koohy
Can we predict T cell specificity with digital biology and machine learning? Nature reviews. Immunology (2023)
Patricia Smith, Oliver N F King, Avery Pennington, Win Tun, Mark Basham, Martin L Jones, Lucy M Collinson, Michele C Darrow, Helen Spiers
Online citizen science with the Zooniverse for analysis of biological volumetric data. Histochemistry and cell biology (2023)
Neville B Y Yee, Elaine M L Ho, Win Tun, Jake L R Smith, Maud Dumoux, Michael Grange, Michele C Darrow, Mark Basham
Ot2Rec: A semi-automatic, extensible, multi-software tomographic reconstruction workflow. Biological imaging 3 (2023)
Christina Reinhard, Michael Drakopoulos, Sharif I Ahmed, Hans Deyhle, Andrew James, Christopher M Charlesworth, Martin Burt, John Sutter, Steven Alexander, Peter Garland, Thomas Yates, Russell Marshall, Ben Kemp, Edmund Warrick, Armando Pueyos, Ben Bradnick, Maurizio Nagni, A Douglas Winter, Jacob Filik, Mark Basham, Nicola Wadeson, Oliver N F King, Navid Aslani, Andrew J Dent
Beamline K11 DIAD: a new instrument for dual imaging and diffraction at Diamond Light Source. Journal of synchrotron radiation 28 (Pt 6) (2021)
James M Parkhurst, Maud Dumoux, Mark Basham, Daniel K Clare, C Alistair Siebert, Trond Varslot, Angus I Kirkland, James H Naismith, Gwyndaf Evans
Parakeet: a digital twin software pipeline to assess the impact of experimental parameters on tomographic reconstructions for cryo-electron tomography. Open biology 11 (10) (2021)
Dimitrios Bellos, Mark Basham, Tony Pridmore, Andrew P French
A convolutional neural network for fast upsampling of undersampled tomograms in X-ray CT time-series using a representative highly sampled tomogram. Journal of synchrotron radiation 26 (Pt 3) (2019)