Hashem Koohy

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 25

Top Venues

Nature reviews. Immunology

Nature methods

Immunotherapy advances

F1000Research

Oxford University

University of Warwick (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Oxford University Jun 01 2017

United Kingdom

Group Head :: Department of Medicine, MRC Human Immunology Unit

Babraham Institute Aug 01 2013

United Kingdom

Postdoctoral Fellow :: Nuclear Dynamics

Wellcome Trust Sanger Institute Sep 01 2010 - Aug 31 2013

United Kingdom

Postdoctoral Fellow :: Machine Learning

Education History

University of Warwick Aug 01 2007 - Jan 17 2011

United Kingdom

PHD :: Systems Biology

Publications

Benjamin McMaster, Christopher Thorpe, Graham S Ogg, Charlotte M Deane, Hashem Koohy
Can AlphaFold's breakthrough in protein structure help decode the fundamental principles of adaptive cellular immunity? Nature methods 21 (5) (2024)
Benjamin McMaster, Christopher Thorpe, Graham S Ogg, Charlotte M Deane, Hashem Koohy
Can AlphaFold's breakthrough in protein structure help decode the fundamental principles of adaptive cellular immunity? Nature methods (2024)
Benjamin McMaster, Christopher Thorpe, Graham S Ogg, Charlotte M Deane, Hashem Koohy
Can AlphaFold's breakthrough in protein structure help decode the fundamental principles of adaptive cellular immunity? Nature methods 21 (5) (2024)
Benjamin McMaster, Christopher Thorpe, Graham S Ogg, Charlotte M Deane, Hashem Koohy
Can AlphaFold's breakthrough in protein structure help decode the fundamental principles of adaptive cellular immunity? Nature methods 21 (5) (2024)
Paul R Buckley, Chloe H Lee, Agne Antanaviciute, Alison Simmons, Hashem Koohy
A systems approach evaluating the impact of SARS-CoV-2 variant of concern mutations on CD8+ T cell responses. Immunotherapy advances 3 (1) (2023)
Paul R Buckley, Chloe H Lee, Agne Antanaviciute, Alison Simmons, Hashem Koohy
A systems approach evaluating the impact of SARS-CoV-2 variant of concern mutations on CD8+ T cell responses. Immunotherapy advances 3 (1) (2023)
Dan Hudson, Ricardo A Fernandes, Mark Basham, Graham Ogg, Hashem Koohy
Can we predict T cell specificity with digital biology and machine learning? Nature reviews. Immunology (2023)
Dan Hudson, Ricardo A Fernandes, Mark Basham, Graham Ogg, Hashem Koohy
Can we predict T cell specificity with digital biology and machine learning? Nature reviews. Immunology (2023)
Paul R Buckley, Chloe H Lee, Agne Antanaviciute, Alison Simmons, Hashem Koohy
A systems approach evaluating the impact of SARS-CoV-2 variant of concern mutations on CD8+ T cell responses. Immunotherapy advances 3 (1) (2023)
Dan Hudson, Ricardo A Fernandes, Mark Basham, Graham Ogg, Hashem Koohy
Can we predict T cell specificity with digital biology and machine learning? Nature reviews. Immunology (2023)
Dan Hudson, Ricardo A Fernandes, Mark Basham, Graham Ogg, Hashem Koohy
Can we predict T cell specificity with digital biology and machine learning? Nature reviews. Immunology (2023)
Paul R Buckley, Chloe H Lee, Agne Antanaviciute, Alison Simmons, Hashem Koohy
A systems approach evaluating the impact of SARS-CoV-2 variant of concern mutations on CD8+ T cell responses. Immunotherapy advances 3 (1) (2023)
Dan Hudson, Ricardo A Fernandes, Mark Basham, Graham Ogg, Hashem Koohy
Can we predict T cell specificity with digital biology and machine learning? Nature reviews. Immunology (2023)
Yi-Ling Chen, Jessica Soo Weei Ng, Rosana Ottakandathil Babu, Jeongmin Woo, Janina Nahler, Clare S Hardman, Prathiba Kurupati, Lea Nussbaum, Fei Gao, Tao Dong, Kristin Ladell, David A Price, David A Duncan, David Johnson, Uzi Gileadi, Hashem Koohy, Graham S Ogg
Group A Streptococcus induces CD1a-autoreactive T cells and promotes psoriatic inflammation. Science immunology 8 (84) (2023)
Chloe H Lee, Jaesung Huh, Paul R Buckley, Myeongjun Jang, Mariana Pereira Pinho, Ricardo A Fernandes, Agne Antanaviciute, Alison Simmons, Hashem Koohy
A robust deep learning workflow to predict CD8 + T-cell epitopes. Genome medicine 15 (1) (2023)
Paul R Buckley, Chloe H Lee, Ruichong Ma, Isaac Woodhouse, Jeongmin Woo, Vasily O Tsvetkov, Dmitrii S Shcherbinin, Agne Antanaviciute, Mikhail Shughay, Margarida Rei, Alison Simmons, Hashem Koohy
Evaluating performance of existing computational models in predicting CD8+ T cell pathogenic epitopes and cancer neoantigens. Briefings in bioinformatics 23 (3) (2022)
Paul R Buckley, Chloe H Lee, Mariana Pereira Pinho, Rosanna Ottakandathil Babu, Jeongmin Woo, Agne Antanaviciute, Alison Simmons, Graham S Ogg, Hashem Koohy
HLA-dependent variation in SARS-CoV-2 CD8 + T cell cross-reactivity with human coronaviruses. Immunology 166 (1) (2022)
Ruichong Ma, Margarida Rei, Isaac Woodhouse, Katherine Ferris, Sophie Kirschner, Anandhakumar Chandran, Uzi Gileadi, Ji-Li Chen, Mariana Pereira Pinho, Yoanna Ariosa-Morejon, Skirmantas Kriaucionis, Nicola Ternette, Hashem Koohy, Olaf Ansorge, Graham Ogg, Puneet Plaha, Vincenzo Cerundolo
Decitabine increases neoantigen and cancer testis antigen expression to enhance T-cell-mediated toxicity against glioblastoma. Neuro-oncology 24 (12) (2022)
Anna Aulicino, Agne Antanaviciute, Joe Frost, Ana Sousa Geros, Esther Mellado, Moustafa Attar, Marta Jagielowicz, Philip Hublitz, Julia Sinz, Lorena Preciado-Llanes, Giorgio Napolitani, Rory Bowden, Hashem Koohy, Hal Drakesmith, Alison Simmons
Dual RNA sequencing reveals dendritic cell reprogramming in response to typhoidal Salmonella invasion. Communications biology 5 (1) (2022)
Vadim Karnaukhov, Wayne Paes, Isaac B Woodhouse, Thomas Partridge, Annalisa Nicastri, Simon Brackenridge, Dmitrii Scherbinin, Dmitry M Chudakov, Ivan V Zvyagin, Nicola Ternette, Hashem Koohy, Persephone Borrow, Mikhail Shugay
HLA binding of self-peptides is biased towards proteins with specific molecular functions. bioRxiv : the preprint server for biology (2021)
Chloe Hyun-Jung Lee, Hashem Koohy
In silico identification of vaccine targets for 2019-nCoV. F1000Research (2020)
Chloe Hyun-Jung Lee, Hashem Koohy
In silico identification of vaccine targets for 2019-nCoV. F1000Research 9 (2020)
Daniele Corridoni, Agne Antanaviciute, Tarun Gupta, David Fawkner-Corbett, Anna Aulicino, Marta Jagielowicz, Kaushal Parikh, Emmanouela Repapi, Steve Taylor, Dai Ishikawa, Ryo Hatano, Taketo Yamada, Wei Xin, Hubert Slawinski, Rory Bowden, Giorgio Napolitani, Oliver Brain, Chikao Morimoto, Hashem Koohy, Alison Simmons
Single-cell atlas of colonic CD8+ T cells in ulcerative colitis. Nature medicine 26 (9) (2020)
Hashem Koohy
The rise and fall of machine learning methods in biomedical research. F1000Research 6 (2017)
Hashem Koohy
The rise and fall of machine learning methods in biomedical research. F1000Research (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Hashem Koohy