Biological imaging

Keyphrases

Publications

volume 4, 2024

Andy Zhang, Oscar Mickelin, Joe Kileel, Eric J Verbeke, Nicholas F Marshall, Marc Aurèle Gilles, Amit Singer
Moment-based metrics for molecules computable from cryogenic electron microscopy images. Biological imaging 4 (2024)
Hui Wang, Shiqing Liao, Xinye Yu, Jiayan Zhang, Z Hong Zhou
TomoNet: A streamlined cryogenic electron tomography software pipeline with automatic particle picking on flexible lattices. Biological imaging 4 (2024)
Hui Wang, Shiqing Liao, Xinye Yu, Jiayan Zhang, Z Hong Zhou
TomoNet: A streamlined cryogenic electron tomography software pipeline with automatic particle picking on flexible lattices. Biological imaging 4 (2024)
Hui Wang, Shiqing Liao, Xinye Yu, Jiayan Zhang, Z Hong Zhou
TomoNet: A streamlined cryogenic electron tomography software pipeline with automatic particle picking on flexible lattices. Biological imaging 4 (2024)
Qinwen Huang, Ye Zhou, Hsuan-Fu Liu, Alberto Bartesaghi
Joint micrograph denoising and protein localization in cryo-electron microscopy. Biological imaging 4 (2024)
Andy Zhang, Oscar Mickelin, Joe Kileel, Eric J Verbeke, Nicholas F Marshall, Marc Aurèle Gilles, Amit Singer
Moment-based metrics for molecules computable from cryogenic electron microscopy images. Biological imaging 4 (2024)
Marzieh Gheisari, Auguste Genovesio
Reconstructing interpretable features in computational super-resolution microscopy via regularized latent search. Biological imaging 4 (2024)
Tommi Muller, Adriana L Duncan, Eric J Verbeke, Joe Kileel
Algebraic constraints and algorithms for common lines in cryo-EM. Biological imaging 4 (2024)
Amit Singer, Ruiyi Yang
Alignment of density maps in Wasserstein distance. Biological imaging 4 (2024)
Amit Singer, Ruiyi Yang
Alignment of density maps in Wasserstein distance. Biological imaging 4 (2024)
Genevieve Buckley, Georg Ramm, Sylvain Trépout
GoldDigger and Checkers, computational developments in cryo-scanning transmission electron tomography to improve the quality of reconstructed volumes. Biological imaging 4 (2024)
Joshua A Bull, Eoghan J Mulholland, Simon J Leedham, Helen M Byrne
Extended correlation functions for spatial analysis of multiplex imaging data. Biological imaging 4 (2024)
Amit Singer, Ruiyi Yang
Alignment of density maps in Wasserstein distance. Biological imaging 4 (2024)
Hui Wang, Shiqing Liao, Xinye Yu, Jiayan Zhang, Z Hong Zhou
TomoNet: A streamlined cryogenic electron tomography software pipeline with automatic particle picking on flexible lattices. Biological imaging 4 (2024)
Genevieve Buckley, Georg Ramm, Sylvain Trépout
GoldDigger and Checkers, computational developments in cryo-scanning transmission electron tomography to improve the quality of reconstructed volumes. Biological imaging 4 (2024)
Genevieve Buckley, Georg Ramm, Sylvain Trépout
GoldDigger and Checkers, computational developments in cryo-scanning transmission electron tomography to improve the quality of reconstructed volumes. Biological imaging 4 (2024)
Amit Singer, Ruiyi Yang
Alignment of density maps in Wasserstein distance. Biological imaging 4 (2024)
Qinwen Huang, Ye Zhou, Hsuan-Fu Liu, Alberto Bartesaghi
Joint micrograph denoising and protein localization in cryo-electron microscopy. Biological imaging 4 (2024)
Joshua A Bull, Eoghan J Mulholland, Simon J Leedham, Helen M Byrne
Extended correlation functions for spatial analysis of multiplex imaging data. Biological imaging 4 (2024)

volume 4, 2023

Luca Panconi, Amy Tansell, Alexander J Collins, Maria Makarova, Dylan M Owen
Three-dimensional topology-based analysis segments volumetric and spatiotemporal fluorescence microscopy. Biological imaging 4 (2023)
Luca Panconi, Amy Tansell, Alexander J Collins, Maria Makarova, Dylan M Owen
Three-dimensional topology-based analysis segments volumetric and spatiotemporal fluorescence microscopy. Biological imaging 4 (2023)

volume 3, 2023

Pablo Conesa, Yunior C Fonseca, Jorge Jiménez de la Morena, Grigory Sharov, Jose Miguel de la Rosa-Trevín, Ana Cuervo, Alberto García Mena, Borja Rodríguez de Francisco, Daniel Del Hoyo, David Herreros, Daniel Marchan, David Strelak, Estrella Fernández-Giménez, Erney Ramírez-Aportela, Federico Pedro de Isidro-Gómez, Irene Sánchez, James Krieger, José Luis Vilas, Laura Del Cano, Marcos Gragera, Mikel Iceta, Marta Martínez, Patricia Losana, Roberto Melero, Roberto Marabini, José María Carazo, Carlos Oscar Sánchez Sorzano
Scipion3: A workflow engine for cryo-electron microscopy image processing and structural biology. Biological imaging 3 (2023)
Angela Zhang, B S Manjunath, Cezar Borba, Yishen Miao, Michael Goebel, Raphael Ruschel, Kerrianne Ryan, William Smith, B S Manjunath
Erratum: Automatic classification and neurotransmitter prediction of synapses in electron microscopy - CORRIGENDUM. Biological imaging 3 (2023)
Ruixiong Wang, Daniel Butt, Stephen J Cross, Paul Verkade, Alin Achim
Bright-field to fluorescence microscopy image translation for cell nuclei health quantification. Biological imaging 3 (2023)
Kristofer Delas Peñas, Mariia Dmitrieva, Dominic Waithe, Jens Rittscher
Annotation-free learning of a spatio-temporal manifold of the cell life cycle. Biological imaging 3 (2023)
Andrea Behanova, Christophe Avenel, Axel Andersson, Eduard Chelebian, Anna Klemm, Lina Wik, Arne Östman, Carolina Wählby
Visualization and quality control tools for large-scale multiplex tissue analysis in TissUUmaps3. Biological imaging 3 (2023)
Chaichontat Sriworarat, Annie B Nguyen, Nicholas J Eagles, Leonardo Collado-Torres, Keri Martinowich, Kristen R Maynard, Stephanie C Hicks
Performant web-based interactive visualization tool for spatially-resolved transcriptomics experiments. Biological imaging 3 (2023)
Sneha N Naik, Roberta Forlano, Pinelopi Manousou, Robert Goldin, Elsa D Angelini
Fibrosis severity scoring on Sirius red histology with multiple-instance deep learning. Biological imaging 3 (2023)
Neville B Y Yee, Elaine M L Ho, Win Tun, Jake L R Smith, Maud Dumoux, Michael Grange, Michele C Darrow, Mark Basham
Ot2Rec: A semi-automatic, extensible, multi-software tomographic reconstruction workflow. Biological imaging 3 (2023)
Ana Cayuela Lopez, Eva M García-Cuesta, Sofía R Gardeta, José Miguel Rodríguez-Frade, Mario Mellado, José Antonio Gómez-Pedrero, Carlos Oscar S Sorzano
TrackAnalyzer: A Fiji/ImageJ toolbox for a holistic analysis of tracks. Biological imaging 3 (2023)
Guy Sharon, Yoel Shkolnisky, Tamir Bendory
Signal enhancement for two-dimensional cryo-EM data processing. Biological imaging 3 (2023)
Sayed Muhammed Rassul, Masahiro Otsu, Iain B Styles, Robert K Neely, Daniel Fulton
Single-molecule tracking of myelin basic protein during oligodendrocyte differentiation. Biological imaging 3 (2023)
Qinwen Huang, Ye Zhou, Hsuan-Fu Liu, Alberto Bartesaghi
Multiple-image super-resolution of cryo-electron micrographs based on deep internal learning. Biological imaging 3 (2023)
Anne-Lise Paupiah, Xavier Marques, Zaha Merlaud, Marion Russeau, Sabine Levi, Marianne Renner
Introducing Diinamic, a flexible and robust method for clustering analysis in single-molecule localization microscopy. Biological imaging 3 (2023)
Daniel Zyss, Susana A Ribeiro, Mary J C Ludlam, Thomas Walter, Amin Fehri
Cell segmentation in images without structural fluorescent labels. Biological imaging 3 (2023)
Madhavi Tippani, Heena R Divecha, Joseph L Catallini, Sang H Kwon, Lukas M Weber, Abby Spangler, Andrew E Jaffe, Thomas M Hyde, Joel E Kleinman, Stephanie C Hicks, Keri Martinowich, Leonardo Collado-Torres, Stephanie C Page, Kristen R Maynard
VistoSeg : Processing utilities for high-resolution images for spatially resolved transcriptomics data. Biological imaging 3 (2023)
François Marelli, Alexander Ernst, Nadia Mercader, Michael Liebling
PAAQ: Paired Alternating AcQuisitions for virtual high frame rate multichannel cardiac fluorescence microscopy. Biological imaging 3 (2023)
Guy Sharon, Yoel Shkolnisky, Tamir Bendory
Signal enhancement for two-dimensional cryo-EM data processing. Biological imaging 3 (2023)
Madhavi Tippani, Heena R Divecha, Joseph L Catallini, Sang H Kwon, Lukas M Weber, Abby Spangler, Andrew E Jaffe, Thomas M Hyde, Joel E Kleinman, Stephanie C Hicks, Keri Martinowich, Leonardo Collado-Torres, Stephanie C Page, Kristen R Maynard
VistoSeg : Processing utilities for high-resolution images for spatially resolved transcriptomics data. Biological imaging 3 (2023)
Anca-Ioana Grapa, Georgios Efthymiou, Ellen Van Obberghen-Schilling, Laure Blanc-Féraud, Xavier Descombes
A spatial statistical framework for the parametric study of fiber networks: Application to fibronectin deposition by normal and activated fibroblasts. Biological imaging 3 (2023)
François Marelli, Alexander Ernst, Nadia Mercader, Michael Liebling
PAAQ: Paired Alternating AcQuisitions for virtual high frame rate multichannel cardiac fluorescence microscopy. Biological imaging 3 (2023)
Anca Caranfil, Yann Le Cunff, Charles Kervrann
BayesTICS: Local temporal image correlation spectroscopy and Bayesian simulation technique for sparse estimation of diffusion in fluorescence imaging. Biological imaging 3 (2023)
Sayed Muhammed Rassul, Masahiro Otsu, Iain B Styles, Robert K Neely, Daniel Fulton
Single-molecule tracking of myelin basic protein during oligodendrocyte differentiation. Biological imaging 3 (2023)
Lisa Balsollier, Frédéric Lavancier, Jean Salamero, Charles Kervrann
A generative model to simulate spatiotemporal dynamics of biomolecules in cells. Biological imaging 3 (2023)
Eduardo A González-Solares, Ali Dariush, Carlos González-Fernández, Aybüke Küpcü Yoldaş, Alireza Molaeinezhad, Mohammad Al Sa'd, Leigh Smith, Tristan Whitmarsh, Neil Millar, Nicholas Chornay, Ilaria Falciatori, Atefeh Fatemi, Daniel Goodwin, Laura Kuett, Claire M Mulvey, Marta Páez Ribes, Fatime Qosaj, Andrew Roth, Ignacio Vázquez-García, Spencer S Watson, Jonas Windhager, Samuel Aparicio, Bernd Bodenmiller, Ed Boyden, Carlos Caldas, Owen Harris, Sohrab P Shah, Simon Tavaré, null null, Dario Bressan, Gregory J Hannon, Nicholas A Walton
Imaging and Molecular Annotation of Xenographs and Tumours (IMAXT): High throughput data and analysis infrastructure. Biological imaging 3 (2023)
Ana Cayuela Lopez, Eva M García-Cuesta, Sofía R Gardeta, José Miguel Rodríguez-Frade, Mario Mellado, José Antonio Gómez-Pedrero, Carlos Oscar S Sorzano
TrackAnalyzer: A Fiji/ImageJ toolbox for a holistic analysis of tracks. Biological imaging 3 (2023)
Dale Gottlieb, Bahar Asadipour, Polina Kostina, Thi Phuong Lien Ung, Chiara Stringari
FLUTE: A Python GUI for interactive phasor analysis of FLIM data. Biological imaging 3 (2023)
Lisa Balsollier, Frédéric Lavancier, Jean Salamero, Charles Kervrann
A generative model to simulate spatiotemporal dynamics of biomolecules in cells. Biological imaging 3 (2023)
Anca-Ioana Grapa, Georgios Efthymiou, Ellen Van Obberghen-Schilling, Laure Blanc-Féraud, Xavier Descombes
A spatial statistical framework for the parametric study of fiber networks: Application to fibronectin deposition by normal and activated fibroblasts. Biological imaging 3 (2023)
Kristofer Delas Peñas, Mariia Dmitrieva, Dominic Waithe, Jens Rittscher
Annotation-free learning of a spatio-temporal manifold of the cell life cycle. Biological imaging 3 (2023)