Martin Culka

Publication Activity (10 Years)

Years Active: 2017-2023
Publications (10 Years): 13

Top Topics

Bone Regeneration

Infectious Diseases

Electron Transfer

Top Venues

The journal of physical chemistry. B

Chemical science

Journal of the American Chemical Society

ACS chemical biology

This page only lists publications with an associated author ORCID identifier.

Publications

Zuzana Osifová, Tadeáš Kalvoda, Jakub Galgonek, Martin Culka, Jiří Vondrášek, Petr Bouř, Lucie Bednarova, Valery Andrushchenko, Martin Dračínský, Lubomír Rulíšek
What are the minimal folding seeds in proteins? Experimental and theoretical assessment of secondary structure propensities of small peptide fragments. Chemical science 15 (2) (2023)
Zuzana Osifová, Tadeáš Kalvoda, Jakub Galgonek, Martin Culka, Jiří Vondrášek, Petr Bouř, Lucie Bednarova, Valery Andrushchenko, Martin Dračínský, Lubomír Rulíšek
What are the minimal folding seeds in proteins? Experimental and theoretical assessment of secondary structure propensities of small peptide fragments. Chemical science 15 (2) (2023)
Tadeáš Kalvoda, Martin Culka, Lubomír Rulíšek, Erik Andris
Exhaustive Mapping of the Conformational Space of Natural Dipeptides by the DFT-D3//COSMO-RS Method. The journal of physical chemistry. B 126 (32) (2022)
Daniel Bím, Michal Navrátil, Ondrej Gutten, Jan Konvalinka, Zsófia Kutil, Martin Culka, Václav Navrátil, Anastassia N Alexandrova, Cyril Barinka, Lubomír Rulíšek
Predicting Effects of Site-Directed Mutagenesis on Enzyme Kinetics by QM/MM and QM Calculations: A Case of Glutamate Carboxypeptidase II. The journal of physical chemistry. B 126 (1) (2022)
Martin Culka, Tadeáš Kalvoda, Ondrej Gutten, Lubomír Rulíšek
Mapping Conformational Space of All 8000 Tripeptides by Quantum Chemical Methods: What Strain Is Affordable within Folded Protein Chains? The journal of physical chemistry. B 125 (1) (2021)
Roberto Benoni, Martin Culka, Oldřich Hudeček, Lenka Gahurova, Hana Cahová
Dinucleoside Polyphosphates as RNA Building Blocks with Pairing Ability in Transcription Initiation. ACS chemical biology 15 (7) (2020)
Oldřich Hudeček, Roberto Benoni, Paul E Reyes-Gutierrez, Martin Culka, Hana Šanderová, Martin Hubálek, Lubomír Rulíšek, Josef Cvačka, Libor Krásný, Hana Cahová
Dinucleoside polyphosphates act as 5'-RNA caps in bacteria. Nature communications 11 (1) (2020)
Daniel Bím, Jakub Chalupský, Martin Culka, Edward I Solomon, Lubomír Rulíšek, Martin Srnec
Proton-Electron Transfer to the Active Site Is Essential for the Reaction Mechanism of Soluble Δ9-Desaturase. Journal of the American Chemical Society 142 (23) (2020)
Martin Culka, Lubomír Rulíšek
Interplay between Conformational Strain and Intramolecular Interaction in Protein Structures: Which of Them Is Evolutionarily Conserved? The journal of physical chemistry. B 124 (16) (2020)
Martin Culka, Jakub Galgonek, Jiri Vymetal, Jiri Vondrasek, Lubomír Rulíšek
Toward Ab Initio Protein Folding: Inherent Secondary Structure Propensity of Short Peptides from the Bioinformatics and Quantum-Chemical Perspective. The journal of physical chemistry. B 123 (6) (2019)
Martin Culka, Lubomír Rulíšek
Factors Stabilizing β-Sheets in Protein Structures from a Quantum-Chemical Perspective. The journal of physical chemistry. B 123 (30) (2019)
Martin Culka, Simona G Huwiler, Matthias Boll, G Matthias Ullmann
Breaking Benzene Aromaticity-Computational Insights into the Mechanism of the Tungsten-Containing Benzoyl-CoA Reductase. Journal of the American Chemical Society 139 (41) (2017)
Christina Diederich, Mario Leypold, Martin Culka, Hansjörg Weber, Rolf Breinbauer, G Matthias Ullmann, Wulf Blankenfeldt
Mechanisms and Specificity of Phenazine Biosynthesis Protein PhzF. Scientific reports 7 (1) (2017)