Jiri Vondrasek (Jiří Vondrášek)

ORCID

Publication Activity (10 Years)

Years Active: 2017-2022
Publications (10 Years): 18

Top Venues

International journal of molecular sciences

Journal of chemical theory and computation

Journal of cheminformatics

Biochemistry

Institute of Organic Chemistry and Biochemistry

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Institute of Organic Chemistry and Biochemistry

Czechia

group leader :: Bioinformatics

Publications

Jiri Vymetal, Jiri Vondrasek
Iterative Landmark-Based Umbrella Sampling (ILBUS) Protocol for Sampling of Conformational Space of Biomolecules. Journal of chemical information and modeling 62 (19) (2022)
Kristyna Vydra Bousova, Monika Zouharova, Petr Herman, Jiri Vymetal, Veronika Vetyskova, Katerina Jiraskova, Jiri Vondrasek
TRPM5 Channel Binds Calcium-Binding Proteins Calmodulin and S100A1. Biochemistry 61 (6) (2022)
Adriano Rutz, Maria Sorokina, Jakub Galgonek, Daniel Mietchen, Egon L Wilighagen, Arnaud Gaudry, James G Graham, Ralf Stephan, Roderic M P Page, Jiri Vondrasek, Christoph Steinbeck, Guido F Pauli, Jean-Luc Wolfender, Jonathan Bisson, Pierre-Marie Allard
The LOTUS initiative for open knowledge management in natural products research. eLife 11 (2022)
Jiří Vymětal, Kateřina Mertová, Kristýna Boušová, Josef Šulc, Konstantinos Tripsianes, Jiri Vondrasek
Fusion of two unrelated protein domains in a chimera protein and its 3D prediction: Justification of the x-ray reference structures as a prediction benchmark. Proteins 90 (12) (2022)
Kristyna Vydra Bousova, Lucie Bednarova, Monika Zouharova, Veronika Vetyskova, Klara Postulkova, Kateřina Hofbauerová, Olivia Petrvalska, Ondřej Vaněk, Konstantinos Tripsianes, Jiri Vondrasek
The order of PDZ3 and TrpCage in fusion chimeras determines their properties-a biophysical characterization. Protein science : a publication of the Protein Society 30 (8) (2021)
Jakub Galgonek, Jiri Vondrasek
IDSM ChemWebRDF: SPARQLing small-molecule datasets. Journal of cheminformatics 13 (1) (2021)
Kateřina Faltejsková, David Jakubec, Jiri Vondrasek
Hydrophobic Amino Acids as Universal Elements of Protein-Induced DNA Structure Deformation. International journal of molecular sciences 21 (11) (2020)
David Jakubec, Jiri Vondrasek
Efficient Estimation of Absolute Binding Free Energy for a Homeodomain-DNA Complex from Nonequilibrium Pulling Simulations. Journal of chemical theory and computation 16 (4) (2020)
Miroslav Kratochvíl, Jiri Vondrasek, Jakub Galgonek
Correction to: Interoperable chemical structure search service. Journal of cheminformatics 12 (1) (2020)
Veronika Vetyskova, Monika Zouharova, Lucie Bednarova, Ondřej Vaněk, Petra Sázelová, Václav Kašička, Jiri Vymetal, Jaroslav Srp, Michaela Rumlová, Tatsiana Charnavets, Klara Postulkova, Janne Elin Reseland, Kristyna Bousova, Jiri Vondrasek
Characterization of AMBN I and II Isoforms and Study of Their Ca2+-Binding Properties. International journal of molecular sciences 21 (23) (2020)
Kristyna Bousova, Ivan Barvik, Petr Herman, Kateřina Hofbauerová, Lenka Monincova, Pavel Majer, Monika Zouharova, Veronika Vetyskova, Klara Postulkova, Jiri Vondrasek
Mapping of CaM, S100A1 and PIP2-Binding Epitopes in the Intracellular N- and C-Termini of TRPM4. International journal of molecular sciences 21 (12) (2020)
Martin Culka, Jakub Galgonek, Jiri Vymetal, Jiri Vondrasek, Lubomír Rulíšek
Toward Ab Initio Protein Folding: Inherent Secondary Structure Propensity of Short Peptides from the Bioinformatics and Quantum-Chemical Perspective. The journal of physical chemistry. B 123 (6) (2019)
Monika Zouharova, Petr Herman, Kateřina Hofbauerová, Jiri Vondrasek, Kristyna Bousova
TRPM6 N-Terminal CaM- and S100A1-Binding Domains. International journal of molecular sciences 20 (18) (2019)
Miroslav Kratochvíl, Jiri Vondrasek, Jakub Galgonek
Interoperable chemical structure search service. Journal of cheminformatics 11 (1) (2019)
David Jakubec, Jiri Vondrasek
Can All-Atom Molecular Dynamics Simulations Quantitatively Describe Homeodomain-DNA Binding Equilibria? Journal of chemical theory and computation 15 (4) (2019)
Jiri Vymetal, Veronika Jurásková, Jiri Vondrasek
AMBER and CHARMM Force Fields Inconsistently Portray the Microscopic Details of Phosphorylation. Journal of chemical theory and computation 15 (1) (2018)
David Jakubec, Miroslav Kratochvíl, Jiri Vymetal, Jiri Vondrasek
Widespread evolutionary crosstalk among protein domains in the context of multi-domain proteins. PloS one 13 (8) (2018)
Olga A Stasyuk, David Jakubec, Jiri Vondrasek, Pavel Hobza
Noncovalent Interactions in Specific Recognition Motifs of Protein-DNA Complexes. Journal of chemical theory and computation 13 (2) (2017)

Jiri Vondrasek.css-eqlu8i{font-size:small;padding-left:4px;} (Jiří Vondrášek)

Publication Activity (10 Years)

Top Topics

Top Venues

Jiri Vondrasek (Jiří Vondrášek)