Martin H Schaefer

ORCID

Publication Activity (10 Years)

Years Active: 2016-2023
Publications (10 Years): 24

Top Venues

Nucleic acids research

Genome biology

Genome medicine

Nature communications

Istituto Europeo di Oncologia

Max Delbrück Center for Molecular Medicine (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Istituto Europeo di Oncologia Oct 01 2018

Italy

Group leader :: Department of Experimental Oncology

Centre de Regulació Genòmica Nov 01 2017 - Sep 30 2018

Spain

Staff scientist

Centre de Regulació Genòmica May 01 2013 - Oct 31 2017

Spain

PostDoc

Education History

Max Delbrück Center for Molecular Medicine Aug 01 2008 - Mar 02 2013

Germany

PHD

Publications

Xavier Hernandez-Alias, Christopher D Katanski, Wen Zhang, Mahdi Assari, Christopher P Watkins, Martin H Schaefer, Luis Serrano, Tao Pan
Single-read tRNA-seq analysis reveals coordination of tRNA modification and aminoacylation and fragmentation. Nucleic acids research 51 (3) (2023)
Gaia Sambruni, Angeli D Macandog, Jakob Wirbel, Danilo Cagnina, Carlotta Catozzi, Tiziano Dallavilla, Francesca Borgo, Nicola Fazio, Uberto Fumagalli-Romario, Wanda L Petz, Teresa Manzo, Simona P Ravenda, Georg Zeller, Luigi Nezi, Martin H Schaefer
Location and condition based reconstruction of colon cancer microbiome from human RNA sequencing data. Genome medicine 15 (1) (2023)
Gaia Sambruni, Angeli D Macandog, Jakob Wirbel, Danilo Cagnina, Carlotta Catozzi, Tiziano Dallavilla, Francesca Borgo, Nicola Fazio, Uberto Fumagalli-Romario, Wanda L Petz, Teresa Manzo, Simona P Ravenda, Georg Zeller, Luigi Nezi, Martin H Schaefer
Location and condition based reconstruction of colon cancer microbiome from human RNA sequencing data. Genome medicine 15 (1) (2023)
Gaia Sambruni, Angeli D Macandog, Jakob Wirbel, Danilo Cagnina, Carlotta Catozzi, Tiziano Dallavilla, Francesca Borgo, Nicola Fazio, Uberto Fumagalli-Romario, Wanda L Petz, Teresa Manzo, Simona P Ravenda, Georg Zeller, Luigi Nezi, Martin H Schaefer
Location and condition based reconstruction of colon cancer microbiome from human RNA sequencing data. Genome medicine 15 (1) (2023)
Gaia Sambruni, Angeli D Macandog, Jakob Wirbel, Danilo Cagnina, Carlotta Catozzi, Tiziano Dallavilla, Francesca Borgo, Nicola Fazio, Uberto Fumagalli-Romario, Wanda L Petz, Teresa Manzo, Simona P Ravenda, Georg Zeller, Luigi Nezi, Martin H Schaefer
Location and condition based reconstruction of colon cancer microbiome from human RNA sequencing data. Genome medicine 15 (1) (2023)
Fabio Alfieri, Giulio Caravagna, Martin H Schaefer
Cancer genomes tolerate deleterious coding mutations through somatic copy number amplifications of wild-type regions. Nature communications 14 (1) (2023)
Xavier Hernandez-Alias, Hannah Benisty, Leandro G Radusky, Luis Serrano, Martin H Schaefer
Using protein-per-mRNA differences among human tissues in codon optimization. Genome biology 24 (1) (2023)
Xavier Hernandez-Alias, Christopher D Katanski, Wen Zhang, Mahdi Assari, Christopher P Watkins, Martin H Schaefer, Luis Serrano, Tao Pan
Single-read tRNA-seq analysis reveals coordination of tRNA modification and aminoacylation and fragmentation. Nucleic acids research 51 (3) (2023)
Fabio Alfieri, Giulio Caravagna, Martin H Schaefer
Author Correction: Cancer genomes tolerate deleterious coding mutations through somatic copy number amplifications of wild-type regions. Nature communications 14 (1) (2023)
Xavier Hernandez-Alias, Hannah Benisty, Leandro G Radusky, Luis Serrano, Martin H Schaefer
Using protein-per-mRNA differences among human tissues in codon optimization. Genome biology 24 (1) (2023)
Xavier Hernandez-Alias, Hannah Benisty, Leandro G Radusky, Luis Serrano, Martin H Schaefer
Using protein-per-mRNA differences among human tissues in codon optimization. Genome biology 24 (1) (2023)
Xavier Hernandez-Alias, Hannah Benisty, Leandro G Radusky, Luis Serrano, Martin H Schaefer
Using protein-per-mRNA differences among human tissues in codon optimization. Genome biology 24 (1) (2023)
Xavier Hernandez-Alias, Christopher D Katanski, Wen Zhang, Mahdi Assari, Christopher P Watkins, Martin H Schaefer, Luis Serrano, Tao Pan
Single-read tRNA-seq analysis reveals coordination of tRNA modification and aminoacylation and fragmentation. Nucleic acids research (2022)
Silvia Tiberti, Carlotta Catozzi, Ottavio Croci, Mattia Ballerini, Danilo Cagnina, Chiara Soriani, Caterina Scirgolea, Zheng Gong, Jiatai He, Angeli D Macandog, Amir Nabinejad, Carina B Nava Lauson, Arianna Quinte', Giovanni Bertalot, Wanda L Petz, Simona P Ravenda, Valerio Licursi, Paola Paci, Marco Rasponi, Luca Rotta, Nicola Fazio, Guangwen Ren, Uberto Fumagalli Romario, Martin H Schaefer, Stefano Campaner, Enrico Lugli, Luigi Nezi, Teresa Manzo
Author Correction: GZMK high CD8 + T effector memory cells are associated with CD15 high neutrophil abundance in non-metastatic colorectal tumors and predict poor clinical outcome. Nature communications 13 (1) (2022)
Gökçe Senger, Stefano Santaguida, Martin H Schaefer
Regulation of protein complex partners as a compensatory mechanism in aneuploid tumors. eLife 11 (2022)
Xavier Hernandez-Alias, Christopher D Katanski, Wen Zhang, Mahdi Assari, Christopher P Watkins, Martin H Schaefer, Luis Serrano, Tao Pan
Single-read tRNA-seq analysis reveals coordination of tRNA modification and aminoacylation and fragmentation. Nucleic acids research (2022)
Xavier Hernandez-Alias, Christopher D Katanski, Wen Zhang, Mahdi Assari, Christopher P Watkins, Martin H Schaefer, Luis Serrano, Tao Pan
Single-read tRNA-seq analysis reveals coordination of tRNA modification and aminoacylation and fragmentation. Nucleic acids research (2022)
Silvia Tiberti, Carlotta Catozzi, Ottavio Croci, Mattia Ballerini, Danilo Cagnina, Chiara Soriani, Caterina Scirgolea, Zheng Gong, Jiatai He, Angeli D Macandog, Amir Nabinejad, Carina B Nava Lauson, Arianna Quinte', Giovanni Bertalot, Wanda L Petz, Simona P Ravenda, Valerio Licursi, Paola Paci, Marco Rasponi, Luca Rotta, Nicola Fazio, Guangwen Ren, Uberto Fumagalli Romario, Martin H Schaefer, Stefano Campaner, Enrico Lugli, Luigi Nezi, Teresa Manzo
GZMK high CD8 + T effector memory cells are associated with CD15 high neutrophil abundance in non-metastatic colorectal tumors and predict poor clinical outcome. Nature communications 13 (1) (2022)
Xavier Hernandez-Alias, Hannah Benisty, Martin H Schaefer, Luis Serrano
Translational efficiency across healthy and tumor tissues is proliferation-related. Molecular systems biology 16 (3) (2021)
Richard Heery, Martin H Schaefer
DNA methylation variation along the cancer epigenome and the identification of novel epigenetic driver events. Nucleic acids research (2021)
Sarah A Head, Xavier Hernandez-Alias, Jae-Seong Yang, Ludovica Ciampi, Violeta Beltran-Sastre, Antonio Torres-Mendez, Manuel Irimia, Martin H Schaefer, Luis Serrano
Silencing of SRRM4 suppresses microexon inclusion and promotes tumor growth across cancers. PLoS biology 19 (2) (2021)
Hannah Benisty, Marc Weber, Xavier Hernandez-Alias, Martin H Schaefer, Luis Serrano
Mutation bias within oncogene families is related to proliferation-specific codon usage. Proceedings of the National Academy of Sciences of the United States of America 117 (48) (2020)
Luis Zapata, Oriol Pich, Luis Serrano, Fyodor A Kondrashov, Stephan Ossowski, Martin H Schaefer
Negative selection in tumor genome evolution acts on essential cellular functions and the immunopeptidome. Genome biology 19 (1) (2018)
Dina Cramer, Luis Serrano, Martin H Schaefer
A network of epigenetic modifiers and DNA repair genes controls tissue-specific copy number alteration preference. eLife 5 (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Martin H Schaefer