Masaki Yamamoto

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 26

Top Venues

Acta crystallographica. Section D, Structural biology

Journal of synchrotron radiation

IUCrJ

Acta crystallographica. Section F, Structural biology communications

RIKEN SPring-8 Center

Osaka University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

RIKEN SPring-8 Center Nov 01 2008

Japan

Group Director :: Research Infrastructure Group

RIKEN Nov 01 1995 - Oct 31 2008

Japan

Reserach Scientist :: SR biophysics & Coherent optics Lab.

RIKEN Oct 01 1991 - Oct 31 1995

Japan

Research Scientist :: Biophysics Laboratory

Education History

Osaka University Apr 01 1988 - Sep 30 1991

Japan

PHD :: Institute for Protein Research

Publications

Riki Imaizumi, Hiroaki Matsuura, Taro Yanai, Kohei Takeshita, Shuto Misawa, Haruhiko Yamaguchi, Naoki Sakai, Yukino Miyagi-Inoue, Miki Suenaga-Hiromori, Toshiyuki Waki, Kunishige Kataoka, Toru Nakayama, Masaki Yamamoto, Seiji Takahashi, Satoshi Yamashita
Structural-Functional Correlations between Unique N-terminal Region and C-terminal Conserved Motif in Short-chain cis-Prenyltransferase from Tomato. Chembiochem : a European journal of chemical biology (2024)
Riki Imaizumi, Hiroaki Matsuura, Taro Yanai, Kohei Takeshita, Shuto Misawa, Haruhiko Yamaguchi, Naoki Sakai, Yukino Miyagi-Inoue, Miki Suenaga-Hiromori, Toshiyuki Waki, Kunishige Kataoka, Toru Nakayama, Masaki Yamamoto, Seiji Takahashi, Satoshi Yamashita
Structural-Functional Correlations between Unique N-terminal Region and C-terminal Conserved Motif in Short-chain cis-Prenyltransferase from Tomato. Chembiochem : a European journal of chemical biology 25 (7) (2024)
Riki Imaizumi, Hiroaki Matsuura, Taro Yanai, Kohei Takeshita, Shuto Misawa, Haruhiko Yamaguchi, Naoki Sakai, Yukino Miyagi-Inoue, Miki Suenaga-Hiromori, Toshiyuki Waki, Kunishige Kataoka, Toru Nakayama, Masaki Yamamoto, Seiji Takahashi, Satoshi Yamashita
Structural-Functional Correlations between Unique N-terminal Region and C-terminal Conserved Motif in Short-chain cis-Prenyltransferase from Tomato. Chembiochem : a European journal of chemical biology 25 (7) (2024)
Hiroaki Matsuura, Naoki Sakai, Sachiko Toma-Fukai, Norifumi Muraki, Koki Hayama, Hironari Kamikubo, Shigetoshi Aono, Yoshiaki Kawano, Masaki Yamamoto, Kunio Hirata
Elucidating polymorphs of crystal structures by intensity-based hierarchical clustering analysis of multiple diffraction data sets. Acta crystallographica. Section D, Structural biology (2023)
Hideo Okumura, Naoki Sakai, Hironori Murakami, Nobuhiro Mizuno, Yuki Nakamura, Go Ueno, Takuya Masunaga, Takashi Kawamura, Seiki Baba, Kazuya Hasegawa, Masaki Yamamoto, Takashi Kumasaka
In situ crystal data-collection and ligand-screening system at SPring-8. Acta crystallographica. Section F, Structural biology communications 78 (Pt 6) (2022)
Seiki Baba, Hiroaki Matsuura, Takashi Kawamura, Naoki Sakai, Yuki Nakamura, Yoshiaki Kawano, Nobuhiro Mizuno, Takashi Kumasaka, Masaki Yamamoto, Kunio Hirata
Guidelines for de novo phasing using multiple small-wedge data collection. Corrigendum. Journal of synchrotron radiation 29 (Pt 2) (2022)
Yoshiaki Kawano, Masahide Hikita, Naohiro Matsugaki, Masaki Yamamoto, Toshiya Senda
A crystal-processing machine using a deep-ultraviolet laser: application to long-wavelength native SAD experiments. Acta crystallographica. Section F, Structural biology communications 78 (Pt 2) (2022)
Kazuya Hasegawa, Seiki Baba, Takashi Kawamura, Masaki Yamamoto, Takashi Kumasaka
Evaluation of the data-collection strategy for room-temperature micro-crystallography studied by serial synchrotron rotation crystallography combined with the humid air and glue-coating method. Acta crystallographica. Section D, Structural biology 77 (Pt 3) (2021)
Seiki Baba, Hiroaki Matsuura, Takashi Kawamura, Naoki Sakai, Yuki Nakamura, Yoshiaki Kawano, Nobuhiro Mizuno, Takashi Kumasaka, Masaki Yamamoto, Kunio Hirata
Guidelines for de novo phasing using multiple small-wedge data collection. Journal of synchrotron radiation 28 (Pt 5) (2021)
Samuel L Rose, Svetlana V Antonyuk, Daisuke Sasaki, Keitaro Yamashita, Kunio Hirata, Go Ueno, Hideo Ago, Robert R Eady, Takehiko Tosha, Masaki Yamamoto, S Samar Hasnain
An unprecedented insight into the catalytic mechanism of copper nitrite reductase from atomic-resolution and damage-free structures. Science advances 7 (1) (2021)
Hironori Murakami, Kazuya Hasegawa, Go Ueno, Naoto Yagi, Masaki Yamamoto, Takashi Kumasaka
Development of SPACE-II for rapid sample exchange at SPring-8 macromolecular crystallography beamlines. Acta crystallographica. Section D, Structural biology 76 (Pt 2) (2020)
Yuki Nakamura, Seiki Baba, Nobuhiro Mizuno, Takaki Irie, Go Ueno, Kunio Hirata, Sho Ito, Kazuya Hasegawa, Masaki Yamamoto, Takashi Kumasaka
Computer-controlled liquid-nitrogen drizzling device for removing frost from cryopreserved crystals. Acta crystallographica. Section F, Structural biology communications 76 (Pt 12) (2020)
Masatoshi Maeki, Sho Ito, Reo Takeda, Go Ueno, Akihiko Ishida, Hirofumi Tani, Masaki Yamamoto, Manabu Tokeshi
Room-temperature crystallography using a microfluidic protein crystal array device and its application to protein-ligand complex structure analysis. Chemical science 11 (34) (2020)
Kunio Hirata, Keitaro Yamashita, Go Ueno, Yoshiaki Kawano, Kazuya Hasegawa, Takashi Kumasaka, Masaki Yamamoto
ZOO: an automatic data-collection system for high-throughput structure analysis in protein microcrystallography. Acta crystallographica. Section D, Structural biology 75 (Pt 2) (2019)
Thomas P Halsted, Keitaro Yamashita, Chai C Gopalasingam, Rajesh T Shenoy, Kunio Hirata, Hideo Ago, Go Ueno, Matthew P Blakeley, Robert R Eady, Svetlana V Antonyuk, Masaki Yamamoto, S Samar Hasnain
Catalytically important damage-free structures of a copper nitrite reductase obtained by femtosecond X-ray laser and room-temperature neutron crystallography. IUCrJ 6 (Pt 4) (2019)
Go Ueno, Atsuhiro Shimada, Eiki Yamashita, Kazuya Hasegawa, Takashi Kumasaka, Kyoko Shinzawa-Itoh, Shinya Yoshikawa, Tomitake Tsukihara, Masaki Yamamoto
Low-dose X-ray structure analysis of cytochrome c oxidase utilizing high-energy X-rays. Journal of synchrotron radiation 26 (Pt 4) (2019)
Seiki Baba, Atsuhiro Shimada, Nobuhiro Mizuno, Junpei Baba, Hideo Ago, Masaki Yamamoto, Takashi Kumasaka
A temperature-controlled cold-gas humidifier and its application to protein crystals with the humid-air and glue-coating method. Journal of applied crystallography 52 (Pt 4) (2019)
Shibom Basu, Vincent Olieric, Filip Leonarski, Naohiro Matsugaki, Yoshiaki Kawano, Tomizaki Takashi, Chia-Ying Huang, Yusuke Yamada, Laura Vera, Natacha Olieric, Jerome Basquin, Justyna A Wojdyla, Oliver Bunk, Kay Diederichs, Masaki Yamamoto, Meitian Wang
Long-wavelength native-SAD phasing: opportunities and challenges. IUCrJ 6 (Pt 3) (2019)
Sho Ito, Go Ueno, Masaki Yamamoto
DeepCentering: fully automated crystal centering using deep learning for macromolecular crystallography. Journal of synchrotron radiation 26 (Pt 4) (2019)
Michihiro Suga, Fusamichi Akita, Keitaro Yamashita, Yoshiki Nakajima, Go Ueno, Hongjie Li, Takahiro Yamane, Kunio Hirata, Yasufumi Umena, Shinichiro Yonekura, Long-Jiang Yu, Hironori Murakami, Takashi Nomura, Tetsunari Kimura, Minoru Kubo, Seiki Baba, Takashi Kumasaka, Kensure Tono, Makina Yabashi, Hiroshi Isobe, Kizashi Yamaguchi, Masaki Yamamoto, Hideo Ago, Jian Ren Shen
An oxyl/oxo mechanism for oxygen-oxygen coupling in PSII revealed by an x-ray free-electron laser. Science (New York, N.Y.) 366 (6463) (2019)
Chai C Gopalasingam, Rachel M Johnson, George N Chiduza, Takehiko Tosha, Masaki Yamamoto, Yoshitsugu Shiro, Svetlana V Antonyuk, Stephen P Muench, S Samar Hasnain
Dimeric structures of quinol-dependent nitric oxide reductases (qNORs) revealed by cryo-electron microscopy. Science advances 5 (8) (2019)
Thomas P Halsted, Keitaro Yamashita, Kunio Hirata, Hideo Ago, Go Ueno, Takehiko Tosha, Robert R Eady, Svetlana V Antonyuk, Masaki Yamamoto, S Samar Hasnain
An unprecedented dioxygen species revealed by serial femtosecond rotation crystallography in copper nitrite reductase. IUCrJ 5 (Pt 1) (2018)
Keitaro Yamashita, Kunio Hirata, Masaki Yamamoto
KAMO: towards automated data processing for microcrystals. Acta crystallographica. Section D, Structural biology 74 (Pt 5) (2018)
Gareth S A Wright, Akane Saeki, Jeffrey C Hansen, Yoko Nishizono, Tamao Hisano, Misaki Kamaya, Kohei Nukina, Hideo Nishitani, Hiro Nakamura, Masaki Yamamoto, Svetlana V Antonyuk, S Samar Hasnain, Yoshitsugu Shiro, Hitomi Sawai
Architecture of the complete oxygen-sensing FixL-FixJ two-component signal transduction system. Science signaling 11 (525) (2018)
Amane Kobayashi, Yuki Takayama, Koji Okajima, Mao Oide, Takahiro Yamamoto, Yuki Sekiguchi, Tomotaka Oroguchi, Masayoshi Nakasako, Yoshiki Kohmura, Masaki Yamamoto, Takahiko Hoshi, Yasufumi Torizuka
Diffraction apparatus and procedure in tomography X-ray diffraction imaging for biological cells at cryogenic temperature using synchrotron X-ray radiation. Journal of synchrotron radiation 25 (Pt 6) (2018)
Masaki Yamamoto, Kunio Hirata, Keitaro Yamashita, Kazuya Hasegawa, Go Ueno, Hideo Ago, Takashi Kumasaka
Protein microcrystallography using synchrotron radiation. IUCrJ 4 (Pt 5) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Masaki Yamamoto