Takashi Kumasaka

Scopus Author ID ResearcherID Researcher Name Resolver ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2023
Publications (10 Years): 25

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

Acta crystallographica. Section D, Structural biology

Nature communications

FEBS letters

Japan Synchrotron Radiation Research Institute

Tokyo Institute of Technology (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Japan Synchrotron Radiation Research Institute Apr 01 2017

Japan

Director :: Protein Crystal Analysis Division

Japan Synchrotron Radiation Research Institute Apr 01 2014 - Mar 31 2017

Japan

Deputy Director :: Protein Crystal Analysis Division

Japan Synchrotron Radiation Research Institute Mar 01 2007 - Mar 31 2014

Japan

Group Leader :: Structural Biology Group, Research & Utilization Division

Tokyo Institute of Technology Apr 01 2002 - Feb 28 2007

Japan

Associate Professor :: Department of Life Science

RIKEN Apr 01 1996 - Mar 31 2002

Japan

Research Scientist :: Structural Biophysics Laboratory

Education History

Tokyo Institute of Technology - Mar 31 1996

Japan

PHD :: Department of Life Science

Publications

Kenji Fukui, Tatsuya Yamamoto, Takeshi Murakawa, Seiki Baba, Takashi Kumasaka, Takato Yano
Catalytic mechanism of the zinc-dependent MutL endonuclease reaction. Life science alliance 6 (10) (2023)
Hideo Okumura, Naoki Sakai, Hironori Murakami, Nobuhiro Mizuno, Yuki Nakamura, Go Ueno, Takuya Masunaga, Takashi Kawamura, Seiki Baba, Kazuya Hasegawa, Masaki Yamamoto, Takashi Kumasaka
In situ crystal data-collection and ligand-screening system at SPring-8. Acta crystallographica. Section F, Structural biology communications 78 (Pt 6) (2022)
Yuya Nishida, Sachiko Yanagisawa, Rikuri Morita, Hideki Shigematsu, Kyoko Shinzawa-Itoh, Hitomi Yuki, Satoshi Ogasawara, Ken Shimuta, Takashi Iwamoto, Chisa Nakabayashi, Waka Matsumura, Hisakazu Kato, Chai Gopalasingam, Takemasa Nagao, Tasneem Qaqorh, Yusuke Takahashi, Satoru Yamazaki, Katsumasa Kamiya, Ryuhei Harada, Nobuhiro Mizuno, Hideyuki Takahashi, Yukihiro Akeda, Makoto Ohnishi, Yoshikazu Ishii, Takashi Kumasaka, Takeshi Murata, Kazumasa Muramoto, Takehiko Tosha, Yoshitsugu Shiro, Teruki Honma, Yasuteru Shigeta, Minoru Kubo, Seiji Takashima, Yasunori Shintani
Author Correction: Identifying antibiotics based on structural differences in the conserved allostery from mitochondrial heme-copper oxidases. Nature communications 13 (1) (2022)
Migiwa Takeda, Seiki Baba, Jiro Okuma, Yoshitsugu Hirose, Asuka Nishimura, Masaki Takata, Kohei Oda, Daisuke Shibata, Takashi Kumasaka, Yasuhiro Kondo
Metagenomic mining and structure-function studies of a hyper-thermostable cellobiohydrolase from hot spring sediment. Communications biology 5 (1) (2022)
Yuya Nishida, Sachiko Yanagisawa, Rikuri Morita, Hideki Shigematsu, Kyoko Shinzawa-Itoh, Hitomi Yuki, Satoshi Ogasawara, Ken Shimuta, Takashi Iwamoto, Chisa Nakabayashi, Waka Matsumura, Hisakazu Kato, Chai Gopalasingam, Takemasa Nagao, Tasneem Qaqorh, Yusuke Takahashi, Satoru Yamazaki, Katsumasa Kamiya, Ryuhei Harada, Nobuhiro Mizuno, Hideyuki Takahashi, Yukihiro Akeda, Makoto Ohnishi, Yoshikazu Ishii, Takashi Kumasaka, Takeshi Murata, Kazumasa Muramoto, Takehiko Tosha, Yoshitsugu Shiro, Teruki Honma, Yasuteru Shigeta, Minoru Kubo, Seiji Takashima, Yasunori Shintani
Author Correction: Identifying antibiotics based on structural differences in the conserved allostery from mitochondrial heme-copper oxidases. Nature communications 13 (1) (2022)
Seiki Baba, Hiroaki Matsuura, Takashi Kawamura, Naoki Sakai, Yuki Nakamura, Yoshiaki Kawano, Nobuhiro Mizuno, Takashi Kumasaka, Masaki Yamamoto, Kunio Hirata
Guidelines for de novo phasing using multiple small-wedge data collection. Corrigendum. Journal of synchrotron radiation 29 (Pt 2) (2022)
Yuya Nishida, Sachiko Yanagisawa, Rikuri Morita, Hideki Shigematsu, Kyoko Shinzawa-Itoh, Hitomi Yuki, Satoshi Ogasawara, Ken Shimuta, Takashi Iwamoto, Chisa Nakabayashi, Waka Matsumura, Hisakazu Kato, Chai Gopalasingam, Takemasa Nagao, Tasneem Qaqorh, Yusuke Takahashi, Satoru Yamazaki, Katsumasa Kamiya, Ryuhei Harada, Nobuhiro Mizuno, Hideyuki Takahashi, Yukihiro Akeda, Makoto Ohnishi, Yoshikazu Ishii, Takashi Kumasaka, Takeshi Murata, Kazumasa Muramoto, Takehiko Tosha, Yoshitsugu Shiro, Teruki Honma, Yasuteru Shigeta, Minoru Kubo, Seiji Takashima, Yasunori Shintani
Identifying antibiotics based on structural differences in the conserved allostery from mitochondrial heme-copper oxidases. Nature communications 13 (1) (2022)
Ryo Suzuki, Seiki Baba, Nobuhiro Mizuno, Kazuya Hasegawa, Haruhiko Koizumi, Kenichi Kojima, Takashi Kumasaka, Masaru Tachibana
Radiation-induced defects in protein crystals observed by X-ray topography. Acta crystallographica. Section D, Structural biology 78 (Pt 2) (2022)
Samuel L Rose, Seiki Baba, Hideo Okumura, Svetlana V Antonyuk, Daisuke Sasaki, Tobias M Hedison, Muralidharan Shanmugam, Derren J Heyes, Nigel S Scrutton, Takashi Kumasaka, Takehiko Tosha, Robert R Eady, Masaki Yamamoto, S Samar Hasnain
Single crystal spectroscopy and multiple structures from one crystal (MSOX) define catalysis in copper nitrite reductases. Proceedings of the National Academy of Sciences of the United States of America 119 (30) (2022)
Yuya Nishida, Sachiko Yanagisawa, Rikuri Morita, Hideki Shigematsu, Kyoko Shinzawa-Itoh, Hitomi Yuki, Satoshi Ogasawara, Ken Shimuta, Takashi Iwamoto, Chisa Nakabayashi, Waka Matsumura, Hisakazu Kato, Chai Gopalasingam, Takemasa Nagao, Tasneem Qaqorh, Yusuke Takahashi, Satoru Yamazaki, Katsumasa Kamiya, Ryuhei Harada, Nobuhiro Mizuno, Hideyuki Takahashi, Yukihiro Akeda, Makoto Ohnishi, Yoshikazu Ishii, Takashi Kumasaka, Takeshi Murata, Kazumasa Muramoto, Takehiko Tosha, Yoshitsugu Shiro, Teruki Honma, Yasuteru Shigeta, Minoru Kubo, Seiji Takashima, Yasunori Shintani
Author Correction: Identifying antibiotics based on structural differences in the conserved allostery from mitochondrial heme-copper oxidases. Nature communications 13 (1) (2022)
Takashi Nomura, Tetsunari Kimura, Yusuke Kanematsu, Daichi Yamada, Keitaro Yamashita, Kunio Hirata, Go Ueno, Hironori Murakami, Tamao Hisano, Raika Yamagiwa, Hanae Takeda, Chai Gopalasingam, Ryota Kousaka, Sachiko Yanagisawa, Osami Shoji, Takashi Kumasaka, Masaki Yamamoto, Yu Takano, Hiroshi Sugimoto, Takehiko Tosha, Minoru Kubo, Yoshitsugu Shiro
Short-lived intermediate in N2O generation by P450 NO reductase captured by time-resolved IR spectroscopy and XFEL crystallography. Proceedings of the National Academy of Sciences of the United States of America 118 (21) (2021)
Kazuya Hasegawa, Seiki Baba, Takashi Kawamura, Masaki Yamamoto, Takashi Kumasaka
Evaluation of the data-collection strategy for room-temperature micro-crystallography studied by serial synchrotron rotation crystallography combined with the humid air and glue-coating method. Acta crystallographica. Section D, Structural biology 77 (Pt 3) (2021)
Seiki Baba, Hiroaki Matsuura, Takashi Kawamura, Naoki Sakai, Yuki Nakamura, Yoshiaki Kawano, Nobuhiro Mizuno, Takashi Kumasaka, Masaki Yamamoto, Kunio Hirata
Guidelines for de novo phasing using multiple small-wedge data collection. Journal of synchrotron radiation 28 (Pt 5) (2021)
Hironori Murakami, Kazuya Hasegawa, Go Ueno, Naoto Yagi, Masaki Yamamoto, Takashi Kumasaka
Development of SPACE-II for rapid sample exchange at SPring-8 macromolecular crystallography beamlines. Acta crystallographica. Section D, Structural biology 76 (Pt 2) (2020)
Yuki Nakamura, Seiki Baba, Nobuhiro Mizuno, Takaki Irie, Go Ueno, Kunio Hirata, Sho Ito, Kazuya Hasegawa, Masaki Yamamoto, Takashi Kumasaka
Computer-controlled liquid-nitrogen drizzling device for removing frost from cryopreserved crystals. Acta crystallographica. Section F, Structural biology communications 76 (Pt 12) (2020)
Kunio Hirata, Keitaro Yamashita, Go Ueno, Yoshiaki Kawano, Kazuya Hasegawa, Takashi Kumasaka, Masaki Yamamoto
ZOO: an automatic data-collection system for high-throughput structure analysis in protein microcrystallography. Acta crystallographica. Section D, Structural biology 75 (Pt 2) (2019)
Go Ueno, Atsuhiro Shimada, Eiki Yamashita, Kazuya Hasegawa, Takashi Kumasaka, Kyoko Shinzawa-Itoh, Shinya Yoshikawa, Tomitake Tsukihara, Masaki Yamamoto
Low-dose X-ray structure analysis of cytochrome c oxidase utilizing high-energy X-rays. Journal of synchrotron radiation 26 (Pt 4) (2019)
Seiki Baba, Atsuhiro Shimada, Nobuhiro Mizuno, Junpei Baba, Hideo Ago, Masaki Yamamoto, Takashi Kumasaka
A temperature-controlled cold-gas humidifier and its application to protein crystals with the humid-air and glue-coating method. Journal of applied crystallography 52 (Pt 4) (2019)
Michihiro Suga, Fusamichi Akita, Keitaro Yamashita, Yoshiki Nakajima, Go Ueno, Hongjie Li, Takahiro Yamane, Kunio Hirata, Yasufumi Umena, Shinichiro Yonekura, Long-Jiang Yu, Hironori Murakami, Takashi Nomura, Tetsunari Kimura, Minoru Kubo, Seiki Baba, Takashi Kumasaka, Kensure Tono, Makina Yabashi, Hiroshi Isobe, Kizashi Yamaguchi, Masaki Yamamoto, Hideo Ago, Jian Ren Shen
An oxyl/oxo mechanism for oxygen-oxygen coupling in PSII revealed by an x-ray free-electron laser. Science (New York, N.Y.) 366 (6463) (2019)
Kenji Fukui, Seiki Baba, Takashi Kumasaka, Takato Yano
Multiple zinc ions maintain the open conformation of the catalytic site in the DNA mismatch repair endonuclease MutL from Aquifex aeolicus. FEBS letters 592 (9) (2018)
Takeshi Murakawa, Seiki Baba, Yoshiaki Kawano, Hideyuki Hayashi, Takato Yano, Takashi Kumasaka, Masaki Yamamoto, Katsuyuki Tanizawa, Toshihide Okajima
In crystallo thermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase. Proceedings of the National Academy of Sciences of the United States of America 116 (1) (2018)
Ryo Suzuki, Haruhiko Koizumi, Keiichi Hirano, Takashi Kumasaka, Kenichi Kojima, Masaru Tachibana
Analysis of oscillatory rocking curve by dynamical diffraction in protein crystals. Proceedings of the National Academy of Sciences of the United States of America 115 (14) (2018)
Haoliang Ke, Shigeyuki Matsumoto, Yosuke Murashima, Haruka Taniguchi-Tamura, Ryo Miyamoto, Yoko Yoshikawa, Chiemi Tsuda, Takashi Kumasaka, Eiichi Mizohata, Hironori Edamatsu, Tohru Kataoka
Structural basis for intramolecular interaction of post-translationally modified H-Ras•GTP prepared by protein ligation. FEBS letters 591 (16) (2017)
Masaki Yamamoto, Kunio Hirata, Keitaro Yamashita, Kazuya Hasegawa, Go Ueno, Hideo Ago, Takashi Kumasaka
Protein microcrystallography using synchrotron radiation. IUCrJ 4 (Pt 5) (2017)
Yutaka Yorinaga, Takashi Kumasaka, Masaki Yamamoto, Kensaku Hamada, Makoto Kawamukai
Crystal structure of a family 80 chitosanase from Mitsuaria chitosanitabida. FEBS letters 591 (3) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Takashi Kumasaka