Matthew Scotch (M Scotch)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 39

Top Venues

Microbiology resource announcements

Viruses

Influenza and other respiratory viruses

medRxiv : the preprint server for health sciences

Arizona State University

University of Pittsburgh (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Arizona State University Aug 01 2016

United States

Associate Professor :: Biomedical Informatics

Arizona State University Jul 01 2010 - Jul 31 2016

United States

Assistant Professor :: Biomedical Informatics

Yale University Jul 01 2008 - Jun 30 2010

United States

Associate Research Scientist :: Yale Center for Medical Informatics

Education History

University of Pittsburgh Aug 01 2002 - May 01 2006

United States

PHD :: Biomedical Informatics

Publications

Xinye Wang, Ki Wook Kim, Gregory Walker, Sacha Stelzer-Braid, Matthew Scotch, William D Rawlinson
Genome characterization of influenza A and B viruses in New South Wales, Australia, in 2019: A retrospective study using high-throughput whole genome sequencing. Influenza and other respiratory viruses 18 (1) (2024)
Brenda Bermudez-Rivera, Brooklyn Hampton, Cian Wheeler, Jacqueline Vargas, Srivatsan Swaminathan, Erin M Driver, Rolf U Halden, Darren P Martin, Matthew Scotch, Temitope Oluwasegun Cephas Faleye
Nine Rhizobium phage genomes recovered from wastewater in Tempe, AZ, October 2019-March 2020. Microbiology resource announcements (2024)
Temitope O C Faleye, Peter Skidmore, Amir Elyaderani, Sangeet Adhikari, Nicole Kaiser, Abriana Smith, Allan Yanez, Tyler Perleberg, Erin M Driver, Rolf U Halden, Darren P Martin, Matthew Scotch
Exploring Canine Picornavirus Diversity in the USA Using Wastewater Surveillance: From High-Throughput Genomic Sequencing to Immuno-Informatics and Capsid Structure Modeling. Viruses 16 (8) (2024)
Xinye Wang, Ki Wook Kim, Gregory Walker, Sacha Stelzer-Braid, Matthew Scotch, William D Rawlinson
Genome characterization of influenza A and B viruses in New South Wales, Australia, in 2019: A retrospective study using high-throughput whole genome sequencing. Influenza and other respiratory viruses 18 (1) (2024)
Xinye Wang, Ki Wook Kim, Gregory Walker, Sacha Stelzer-Braid, Matthew Scotch, William D Rawlinson
Genome characterization of influenza A and B viruses in New South Wales, Australia, in 2019: A retrospective study using high-throughput whole genome sequencing. Influenza and other respiratory viruses 18 (1) (2024)
Temitope O C Faleye, Peter Skidmore, Amir Elyaderani, Sangeet Adhikari, Nicole Kaiser, Abriana Smith, Allan Yanez, Tyler Perleberg, Erin M Driver, Rolf U Halden, Darren P Martin, Matthew Scotch
Exploring Canine Picornavirus Diversity in the USA Using Wastewater Surveillance: From High-Throughput Genomic Sequencing to Immuno-Informatics and Capsid Structure Modeling. Viruses 16 (8) (2024)
Temitope Oluwasegun Cephas Faleye, Erin M Driver, Devin A Bowes, Abriana Smith, Nicole A Kaiser, Jillian M Wright, Ainsley R Chapman, Rolf U Halden, Arvind Varsani, Matthew Scotch
Canine Parvovirus 2C Identified in Dog Feces from Poop Bags Collected from Outdoor Waste Bins in Arizona USA, June 2022. Transboundary and emerging diseases 2023 (2023)
Davy Weissenbacher, Karen O'Connor, Ari Klein, Su Golder, Ivan Flores, Amir Elyaderani, Matthew Scotch, Graciela Gonzalez-Hernandez
Text mining biomedical literature to identify extremely unbalanced data for digital epidemiology and systematic reviews: dataset and methods for a SARS-CoV-2 genomic epidemiology study. medRxiv : the preprint server for health sciences (2023)
Ainsley R Chapman, Jillian M Wright, Nicole A Kaiser, Peter M Jones, Erin M Driver, Rolf U Halden, Darren P Martin, Matthew Scotch, Temitope Oluwasegun Cephas Faleye
Rhizobium Phage-Like Microvirus Genome Sequence Identified in Wastewater in Arizona, USA, in November 2020 Encodes an Endolysin and a Putative Multiheme Cytochrome c -like Protein. Microbiology resource announcements 12 (5) (2023)
Saif Sherif Khairat, Sue S Feldman, Arif Rana, Mohammad Faysel, Saptarshi Purkayastha, Matthew Scotch, Christina Eldredge
Foundational domains and competencies for baccalaureate health informatics education. Journal of the American Medical Informatics Association : JAMIA (2023)
Ainsley R Chapman, Jillian M Wright, Nicole A Kaiser, Peter M Jones, Erin M Driver, Rolf U Halden, Darren P Martin, Matthew Scotch, Temitope Oluwasegun Cephas Faleye
Rhizobium Phage-Like Microvirus Genome Sequence Identified in Wastewater in Arizona, USA, in November 2020 Encodes an Endolysin and a Putative Multiheme Cytochrome c -like Protein. Microbiology resource announcements 12 (5) (2023)
Temitope Oluwasegun Cephas Faleye, Erin M Driver, Devin A Bowes, Abriana Smith, Nicole A Kaiser, Jillian M Wright, Ainsley R Chapman, Rolf U Halden, Arvind Varsani, Matthew Scotch
Canine Parvovirus 2C Identified in Dog Feces from Poop Bags Collected from Outdoor Waste Bins in Arizona USA, June 2022. Transboundary and emerging diseases 2023 (2023)
Ainsley R Chapman, Jillian M Wright, Nicole A Kaiser, Peter M Jones, Erin M Driver, Rolf U Halden, Darren P Martin, Matthew Scotch, Temitope Oluwasegun Cephas Faleye
Rhizobium Phage-Like Microvirus Genome Sequence Identified in Wastewater in Arizona, USA, in November 2020 Encodes an Endolysin and a Putative Multiheme Cytochrome c -like Protein. Microbiology resource announcements (2023)
Ainsley R Chapman, Jillian M Wright, Nicole A Kaiser, Peter M Jones, Erin M Driver, Rolf U Halden, Darren P Martin, Matthew Scotch, Temitope Oluwasegun Cephas Faleye
Rhizobium Phage-Like Microvirus Genome Sequence Identified in Wastewater in Arizona, USA, in November 2020 Encodes an Endolysin and a Putative Multiheme Cytochrome c -like Protein. Microbiology resource announcements (2023)
Karen O'Connor, Davy Weissenbacher, Amir Elyaderani, Matthew Scotch, Graciela Gonzalez-Hernandez
Patient-Related Metadata Reported in Sequencing Studies of SARS-CoV-2: Protocol for a Scoping Review and Bibliometric Analysis. medRxiv : the preprint server for health sciences (2023)
Ainsley R Chapman, Jillian M Wright, Nicole A Kaiser, Peter M Jones, Erin M Driver, Rolf U Halden, Darren P Martin, Matthew Scotch, Temitope Oluwasegun Cephas Faleye
Rhizobium Phage-Like Microvirus Genome Sequence Identified in Wastewater in Arizona, USA, in November 2020 Encodes an Endolysin and a Putative Multiheme Cytochrome c -like Protein. Microbiology resource announcements 12 (5) (2023)
Matthew Scotch, Kimberly Lauer, Eric D Wieben, Yesesri Cherukuri, Julie M Cunningham, Eric W Klee, Jonathan J Harrington, Julie S Lau, Samantha J McDonough, Mark Mutawe, John C O'Horo, Chad E Rentmeester, Nicole R Schlicher, Valerie T White, Susan K Schneider, Peter T Vedell, Xiong Wang, Joseph D Yao, Bobbi S Pritt, Andrew P Norgan
Genomic epidemiology reveals the dominance of Hennepin County in the transmission of SARS-CoV-2 in Minnesota from 2020 to 2022. mSphere (2023)
Courtney L Collins, Simona Kraberger, Rafaela S Fontenele, Temitope O C Faleye, Deborah Adams, Sangeet Adhikari, Helen Sandrolini, Sarah Finnerty, Rolf U Halden, Matthew Scotch, Darren P Martin
Genome Sequences of Anelloviruses, Genomovirus, and Papillomavirus Isolated from Nasal Pharyngeal Swabs. Microbiology resource announcements 11 (9) (2022)
Abriana Smith, Nicole Kaiser, Allan Yanez, Tyler Perleberg, Amir Elyaderani, Peter Skidmore, Sangeet Adhikari, Erin M Driver, Rolf U Halden, Darren P Martin, Matthew Scotch, Temitope Oluwasegun Cephas Faleye
Genome Sequence of a Microvirus Recovered from Wastewater in Arizona, USA, in October 2020, Encodes a Previously Undescribed DNA-Binding Protein. Microbiology resource announcements 11 (10) (2022)
Temitope O C Faleye, Amir Elyaderani, Peter Skidmore, Sangeet Adhikari, Abriana Smith, Nicole Kaiser, Helen Sandrolini, Sarah Finnerty, Rolf U Halden, Arvind Varsani, Matthew Scotch
Surveillance of rhinovirus diversity among a university community identifies multiple types from all three species including an unassigned rhinovirus A genotype. Influenza and other respiratory viruses (2022)
Matthew Scotch, Kimberly Lauer, Eric D Wieben, Yesesri Cherukuri, Julie M Cunningham, Eric W Klee, Jonathan J Harrington, Julie S Lau, Samantha J McDonough, Mark Mutawe, John C Oâ Horo, Chad E Rentmeester, Nicole R Schlicher, Valerie T White, Susan K Schneider, Peter T Vedell, Xiong Wang, Joseph D Yao, Bobbi S Pritt, Andrew P Norgan
Genomic epidemiology and phylodynamics for county-to-county transmission of SARS-CoV-2 in Minnesota, from 19A to Omicron. medRxiv : the preprint server for health sciences (2022)
Temitope Oluwasegun Cephas Faleye, Erin M Driver, Devin A Bowes, Rochelle H Holm, Daymond Talley, Ray Yeager, Aruni Bhatnagar, Ted Smith, Arvind Varsani, Rolf U Halden, Matthew Scotch
Detection of human, porcine and canine picornaviruses in municipal sewage sludge using pan-enterovirus amplicon-based long-read Illumina sequencing. Emerging microbes & infections 11 (1) (2022)
Temitope O C Faleye, Peter Skidmore, Amir Elyaderani, Sangeet Adhikari, Nicole Kaiser, Abriana Smith, Allan Yanez, Tyler Perleberg, Erin M Driver, Rolf U Halden, Darren P Martin, Matthew Scotch
Impact of sample clarification by size exclusion on virus detection and diversity in wastewater-based epidemiology. medRxiv : the preprint server for health sciences (2022)
Courtney L Collins, Temitope Oluwasegun Cephas Faleye, Simona Kraberger, Rafaela S Fontenele, Deborah Adams, Sangeet Adhikari, Helen Sandrolini, Sarah Finnerty, Rolf U Halden, Matthew Scotch, Darren P Martin
Complete Coding Sequences of Rhinovirus Types A46, A39, C56, and C48. Microbiology resource announcements 11 (11) (2022)
Rachel Beard, Elizabeth Wentz, Matthew Scotch
Correction to: A systematic review of spatial decision support systems in public health informatics supporting the identification of high risk areas for zoonotic disease outbreaks. International journal of health geographics 20 (1) (2021)
Temitope O C Faleye, Erin M Driver, Devin Bowes, Sangeet Adhikari, Deborah Adams, Darren P Martin, Rolf U Halden, Matthew Scotch
Pan-Enterovirus Amplicon-Based High-Throughput Sequencing Detects the Complete Capsid of a EVA71 Genotype C1 Variant via Wastewater-Based Epidemiology in Arizona. Viruses 13 (1) (2021)
Temitope O C Faleye, Paloma I Beamer, Erin M Driver, Sangeet Adhikari, Deborah Adams, Darren P Martin, Rolf U Halden, Matthew Scotch
Wastewater-Based Epidemiology and Long-Read Sequencing to Identify Enterovirus Circulation in Three Municipalities in Maricopa County, Arizona, Southwest United States between June and October 2020. Viruses 13 (9) (2021)
T Islam, M Sadeghi Lahijani, Ashok Srinivasan, Sirish Namilae, Anuj Mubayi, Matthew Scotch
From bad to worse: airline boarding changes in response to COVID-19. Royal Society open science 8 (4) (2021)
Arjun Magge, Davy Weissenbacher, Karen O'Connor, Tasnia Tahsin, Graciela Gonzalez-Hernandez, Matthew Scotch
GeoBoost2: a natural languageprocessing pipeline for GenBank metadata enrichment for virus phylogeography. Bioinformatics (Oxford, England) 36 (20) (2021)
Wonsuk Yoo, Alexis Koskan, Matthew Scotch, Heidi L Pottinger, Warner K Huh, Deborah L Helitzer
Patterns and Disparities in Human Papillomavirus (HPV) Vaccine Uptake for Young Female Adolescents among U.S. States: NIS-Teen (2008-2016). Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 29 (7) (2020)
Matthew Scotch, Rolf U Halden, Anthony Denton, Helen Sandrolini, Rafaela S Fontenele, Darren P Martin
Coding-Complete Genome Sequence of a Human Respirovirus 1 Strain from a Clinical Sample in Arizona. Microbiology resource announcements 9 (24) (2020)
Xin Chen, Dillon Charles Adam, Abrar Ahmad Chughtai, Sacha Stelzer-Braid, Matthew Scotch, Chandini Raina MacIntyre
The Phylogeography of MERS-CoV in Hospital Outbreak-Associated Cases Compared to Sporadic Cases in Saudi Arabia. Viruses 12 (5) (2020)
LaRinda A Holland, Emily A Kaelin, Rabia Maqsood, Bereket Estifanos, Lily I Wu, Darren P Martin, Rolf U Halden, Brenda G Hogue, Matthew Scotch, Efrem S Lim
An 81-Nucleotide Deletion in SARS-CoV-2 ORF7a Identified from Sentinel Surveillance in Arizona (January to March 2020). Journal of virology 94 (14) (2020)
Dillon Charles Adam, Matthew Scotch, C Raina MacIntyre
Phylodynamics of Influenza A/H1N1pdm09 in India Reveals Circulation Patterns and Increased Selection for Clade 6b Residues and Other High Mortality Mutants. Viruses 11 (9) (2019)
Matthew Scotch, Tasnia Tahsin, Davy Weissenbacher, Karen O'Connor, Arjun Magge, Matteo Vaiente, Marc A Suchard, Graciela Gonzalez-Hernandez
Incorporating sampling uncertainty in the geospatial assignment of taxa for virus phylogeography. Virus evolution 5 (1) (2019)
Rachel Beard, Matthew Scotch
Identifying current and emerging resources and tools utilized for detection, prediction, and visualization of viral zoonotic disease clusters: a Delphi study. JAMIA open 2 (3) (2019)
Daniel Magee, Jesse E Taylor, Matthew Scotch
The Effects of Sampling Location and Predictor Point Estimate Certainty on Posterior Support in Bayesian Phylogeographic Generalized Linear Models. Scientific reports 8 (1) (2018)
Rachel Beard, Elizabeth Wentz, Matthew Scotch
A systematic review of spatial decision support systems in public health informatics supporting the identification of high risk areas for zoonotic disease outbreaks. International journal of health geographics 17 (1) (2018)
Daniel Magee, Marc A Suchard, Matthew Scotch
Bayesian phylogeography of influenza A/H3N2 for the 2014-15 season in the United States using three frameworks of ancestral state reconstruction. PLoS computational biology 13 (2) (2017)

Matthew Scotch.css-eqlu8i{font-size:small;padding-left:4px;} (M Scotch)

Publication Activity (10 Years)

Top Topics

Top Venues

Matthew Scotch (M Scotch)