Efrem S Lim (Efrem Lim)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 45

Top Venues

Research square

Viruses

mBio

Microbiology spectrum

Arizona State University

University of Washington (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Arizona State University Aug 21 2017

United States

Assistant Professor :: School of Life Sciences

Education History

University of Washington Sep 26 2007 - Feb 29 2012

United States

PHD :: Microbiology

University of Michigan Sep 06 2005 - Apr 17 2007

United States

BSC :: Microbiology

Publications

Matthew F Smith, Rabia Maqsood, Regan A Sullins, Erin M Driver, Rolf U Halden, Efrem S Lim
Seasonality of respiratory, enteric, and urinary viruses revealed by wastewater genomic surveillance. mSphere 9 (5) (2024)
Eric D Do, Steven C Holland, Emily A Kaelin, Caroline Mitchell, Jaime Soria, Alberto La Rosa, Eduardo Ticona, Robert W Coombs, Lisa M Frenkel, Marta E Bull, Efrem S Lim
Genome sequences of human anelloviruses in the Lamedtorquevirus , Memtorquevirus , and Samektorquevirus genera identified from the female genital tract. Microbiology resource announcements (2024)
Rabia Maqsood, Matthew F Smith, LaRinda A Holland, Regan A Sullins, Steven C Holland, Michelle Tan, Gabrielle M Hernandez Barrera, Alexis W Thomas, Mario Islas, Joanna L Kramer, Lora Nordstrom, Mary Mulrow, Michael White, Vel Murugan, Efrem S Lim
Influenza Virus Genomic Surveillance, Arizona, USA, 2023-2024. Viruses 16 (5) (2024)
Ayla Žuštra, Victoria R Leonard, LaRinda A Holland, James C Hu, Tianchen Mu, Steven C Holland, Lily I Wu, Emily R Begnel, Ednah Ojee, Bhavna H Chohan, Barbra A Richardson, John Kinuthia, Dalton Wamalwa, Jennifer Slyker, Dara A Lehman, Soren Gantt, Efrem S Lim
Longitudinal dynamics of the nasopharyngal microbiome in response to SARS-CoV-2 Omicron variant and HIV infection in Kenyan women and their infants. Research square (2024)
Rabia Maqsood, Lily I Wu, Daniel C Brennan, Efrem S Lim
Longitudinal alterations in the urinary virome of kidney transplant recipients are influenced by BK viremia and patient sex. Microbiology spectrum (2024)
Rabia Maqsood, LaRinda A Holland, Lily I Wu, Emily R Begnel, Judith Adhiambo, Prestone Owiti, Bhavna H Chohan, Soren Gantt, John Kinuthia, Dalton Wamalwa, Ednah Ojee, Barbra A Richardson, Jennifer Slyker, Dara A Lehman, Efrem S Lim
Gut virome and microbiome dynamics before and after SARS-CoV-2 infection in women living with HIV and their infants. Research square (2024)
Rabia Maqsood, LaRinda A Holland, Lily I Wu, Emily R Begnel, Judith Adhiambo, Prestone Owiti, Bhavna H Chohan, Soren Gantt, John Kinuthia, Dalton Wamalwa, Ednah Ojee, Barbra A Richardson, Jennifer Slyker, Dara A Lehman, Efrem S Lim
Gut virome and microbiome dynamics before and after SARS-CoV-2 infection in women living with HIV and their infants. Research square (2024)
Emily A Kaelin, Caroline Mitchell, Jamie Soria, Alberto La Rosa, Eduardo Ticona, Robert W Coombs, Lisa M Frenkel, Marta E Bull, Efrem S Lim
Longitudinal cervicovaginal microbiome and virome alterations during ART and discordant shedding in women living with HIV. Research square (2024)
Steven C Holland, Matthew F Smith, LaRinda A Holland, Rabia Maqsood, James C Hu, Vel Murugan, Erin M Driver, Rolf U Halden, Efrem S Lim
Human adenovirus outbreak at a university campus monitored by wastewater and clinical surveillance. medRxiv : the preprint server for health sciences (2024)
Rabia Maqsood, Matthew F Smith, LaRinda A Holland, Regan A Sullins, Steven C Holland, Michelle Tan, Gabrielle M Hernandez Barrera, Alexis W Thomas, Mario Islas, Joanna L Kramer, Lora Nordstrom, Mary Mulrow, Michael White, Vel Murugan, Efrem S Lim
Influenza Virus Genomic Surveillance, Arizona, USA, 2023-2024. Viruses 16 (5) (2024)
Rabia Maqsood, Lily I Wu, Daniel C Brennan, Efrem S Lim
Longitudinal alterations in the urinary virome of kidney transplant recipients are influenced by BK viremia and patient sex. Microbiology spectrum 12 (8) (2024)
Rabia Maqsood, LaRinda A Holland, Lily I Wu, Emily R Begnel, Judith Adhiambo, Prestone Owiti, Bhavna H Chohan, Soren Gantt, John Kinuthia, Dalton Wamalwa, Ednah Ojee, Barbra A Richardson, Jennifer Slyker, Dara A Lehman, Efrem S Lim
Gut virome and microbiome dynamics before and after SARS-CoV-2 infection in women living with HIV and their infants. Gut microbes 16 (1) (2024)
Matthew F Smith, Rabia Maqsood, Regan A Sullins, Erin M Driver, Rolf U Halden, Efrem S Lim
Seasonality of respiratory, enteric, and urinary viruses revealed by wastewater genomic surveillance. mSphere 9 (5) (2024)
Rabia Maqsood, LaRinda A Holland, Lily I Wu, Emily R Begnel, Judith Adhiambo, Prestone Owiti, Bhavna H Chohan, Soren Gantt, John Kinuthia, Dalton Wamalwa, Ednah Ojee, Barbra A Richardson, Jennifer Slyker, Dara A Lehman, Efrem S Lim
Gut virome and microbiome dynamics before and after SARS-CoV-2 infection in women living with HIV and their infants. Gut microbes 16 (1) (2024)
Rabia Maqsood, LaRinda A Holland, Lily I Wu, Emily R Begnel, Judith Adhiambo, Prestone Owiti, Bhavna H Chohan, Soren Gantt, John Kinuthia, Dalton Wamalwa, Ednah Ojee, Barbra A Richardson, Jennifer Slyker, Dara A Lehman, Efrem S Lim
Gut virome and microbiome dynamics before and after SARS-CoV-2 infection in women living with HIV and their infants. Research square (2024)
Steven C Holland, Matthew F Smith, LaRinda A Holland, Rabia Maqsood, James C Hu, Vel Murugan, Erin M Driver, Rolf U Halden, Efrem S Lim
Human adenovirus outbreak at a university campus monitored by wastewater and clinical surveillance. medRxiv : the preprint server for health sciences (2024)
Emily A Kaelin, Caroline Mitchell, Jamie Soria, Alberto La Rosa, Eduardo Ticona, Robert W Coombs, Lisa M Frenkel, Marta E Bull, Efrem S Lim
Longitudinal cervicovaginal microbiome and virome alterations during ART and discordant shedding in women living with HIV. Research square (2024)
Rabia Maqsood, Lily I Wu, Daniel C Brennan, Efrem S Lim
Longitudinal alterations in the urinary virome of kidney transplant recipients are influenced by BK viremia and patient sex. Microbiology spectrum (2024)
Steven C Holland, Matthew F Smith, LaRinda A Holland, Rabia Maqsood, James C Hu, Vel Murugan, Erin M Driver, Rolf U Halden, Efrem S Lim
Human adenovirus outbreak at a university campus monitored by wastewater and clinical surveillance. medRxiv : the preprint server for health sciences (2024)
Rabia Maqsood, Matthew F Smith, LaRinda A Holland, Regan A Sullins, Steven C Holland, Michelle Tan, Gabrielle M Hernandez Barrera, Alexis W Thomas, Mario Islas, Joanna L Kramer, Lora Nordstrom, Mary Mulrow, Michael White, Vel Murugan, Efrem S Lim
Influenza Virus Genomic Surveillance, Arizona, USA, 2023-2024. Viruses 16 (5) (2024)
Matthew F Smith, Rabia Maqsood, Regan A Sullins, Erin M Driver, Rolf U Halden, Efrem S Lim
Seasonality of respiratory, enteric, and urinary viruses revealed by wastewater genomic surveillance. mSphere 9 (5) (2024)
Ayla Žuštra, Victoria R Leonard, LaRinda A Holland, James C Hu, Tianchen Mu, Steven C Holland, Lily I Wu, Emily R Begnel, Ednah Ojee, Bhavna H Chohan, Barbra A Richardson, John Kinuthia, Dalton Wamalwa, Jennifer Slyker, Dara A Lehman, Soren Gantt, Efrem S Lim
Longitudinal dynamics of the nasopharyngal microbiome in response to SARS-CoV-2 Omicron variant and HIV infection in Kenyan women and their infants. Research square (2024)
Steven C Holland, Matthew F Smith, LaRinda A Holland, Rabia Maqsood, James C Hu, Vel Murugan, Erin M Driver, Rolf U Halden, Efrem S Lim
Human adenovirus outbreak at a university campus monitored by wastewater and clinical surveillance. medRxiv : the preprint server for health sciences (2024)
Rabia Maqsood, LaRinda A Holland, Lily I Wu, Emily R Begnel, Judith Adhiambo, Prestone Owiti, Bhavna H Chohan, Soren Gantt, John Kinuthia, Dalton Wamalwa, Ednah Ojee, Barbra A Richardson, Jennifer Slyker, Dara A Lehman, Efrem S Lim
Gut virome and microbiome dynamics before and after SARS-CoV-2 infection in women living with HIV and their infants. Gut microbes 16 (1) (2024)
Matthew F Smith, Rabia Maqsood, Regan A Sullins, Erin M Driver, Rolf U Halden, Efrem S Lim
Seasonality of respiratory, enteric, and urinary viruses revealed by wastewater genomic surveillance. mSphere (2024)
Rabia Maqsood, LaRinda A Holland, Lily I Wu, Emily R Begnel, Judith Adhiambo, Prestone Owiti, Bhavna H Chohan, Soren Gantt, John Kinuthia, Dalton Wamalwa, Ednah Ojee, Barbra A Richardson, Jennifer Slyker, Dara A Lehman, Efrem S Lim
Gut virome and microbiome dynamics before and after SARS-CoV-2 infection in women living with HIV and their infants. Gut microbes 16 (1) (2024)
Matthew F Smith, Steven C Holland, Mihyun B Lee, James C Hu, Nghia C Pham, Regan A Sullins, LaRinda A Holland, Tianchen Mu, Alexis W Thomas, Remington Fitch, Erin M Driver, Rolf U Halden, Michelle Villegas-Gold, Sheri Sanders, Jennifer L Krauss, Lora Nordstrom, Mary Mulrow, Michael White, Vel Murugan, Efrem S Lim
Baseline Sequencing Surveillance of Public Clinical Testing, Hospitals, and Community Wastewater Reveals Rapid Emergence of SARS-CoV-2 Omicron Variant of Concern in Arizona, USA. mBio 14 (1) (2023)
Matthew F Smith, Steven C Holland, Mihyun B Lee, James C Hu, Nghia C Pham, Regan A Sullins, LaRinda A Holland, Tianchen Mu, Alexis W Thomas, Remington Fitch, Erin M Driver, Rolf U Halden, Michelle Villegas-Gold, Sheri Sanders, Jennifer L Krauss, Lora Nordstrom, Mary Mulrow, Michael White, Vel Murugan, Efrem S Lim
Baseline Sequencing Surveillance of Public Clinical Testing, Hospitals, and Community Wastewater Reveals Rapid Emergence of SARS-CoV-2 Omicron Variant of Concern in Arizona, USA. mBio 14 (1) (2023)
Steven C Holland, LaRinda A Holland, Matthew F Smith, Mihyun B Lee, James C Hu, Efrem S Lim
Digital PCR Discriminates between SARS-CoV-2 Omicron Variants and Immune Escape Mutations. Microbiology spectrum (2023)
Matthew F Smith, Steven C Holland, Mihyun B Lee, James C Hu, Nghia C Pham, Regan A Sullins, LaRinda A Holland, Tianchen Mu, Alexis W Thomas, Remington Fitch, Erin M Driver, Rolf U Halden, Michelle Villegas-Gold, Sheri Sanders, Jennifer L Krauss, Lora Nordstrom, Mary Mulrow, Michael White, Vel Murugan, Efrem S Lim
Baseline Sequencing Surveillance of Public Clinical Testing, Hospitals, and Community Wastewater Reveals Rapid Emergence of SARS-CoV-2 Omicron Variant of Concern in Arizona, USA. mBio (2023)
Matthew F Smith, Steven C Holland, Mihyun B Lee, James C Hu, Nghia C Pham, Regan A Sullins, LaRinda A Holland, Tianchen Mu, Alexis W Thomas, Remington Fitch, Erin M Driver, Rolf U Halden, Michelle Villegas-Gold, Sheri Sanders, Jennifer L Krauss, Lora Nordstrom, Mary Mulrow, Michael White, Vel Murugan, Efrem S Lim
Baseline Sequencing Surveillance of Public Clinical Testing, Hospitals, and Community Wastewater Reveals Rapid Emergence of SARS-CoV-2 Omicron Variant of Concern in Arizona, USA. mBio 14 (1) (2023)
Rabia Maqsood, Peter T Skidmore, LaRinda A Holland, Joshua L Au, Adam K Khan, Lily I Wu, Ningxin Ma, Emily R Begnel, Bhavna H Chohan, Judith Adhiambo, Grace John-Stewart, James Kiarie, John Kinuthia, Michael H Chung, Barbra A Richardson, Jennifer Slyker, Dara A Lehman, Efrem S Lim
Dynamic Changes in Breast Milk Microbiome in the Early Postpartum Period of Kenyan Women Living with HIV Are Influenced by Antibiotics but Not Antiretrovirals. Microbiology spectrum 10 (2) (2022)
Isabela Rivabem Zanetti, Michelle Burgin, Liqiang Zhang, Steve T Yeh, Sriram Ambadapadi, Jacquelyn Kilbourne, Jordan R Yaron, Kenneth M Lowe, Juliane Daggett-Vondras, David Fonseca, Ryan Boyd, Dara Wakefield, William Clapp, Efrem S Lim, Hao Chen, Alexandra Lucas
Virus-Derived Chemokine Modulating Protein Pre-Treatment Blocks Chemokine-Glycosaminoglycan Interactions and Significantly Reduces Transplant Immune Damage. Pathogens (Basel, Switzerland) 11 (5) (2022)
Emily A Kaelin, Peter T Skidmore, Paweł Łaniewski, LaRinda A Holland, Dana M Chase, Melissa M Herbst-Kralovetz, Efrem S Lim
Cervicovaginal DNA Virome Alterations Are Associated with Genital Inflammation and Microbiota Composition. mSystems 7 (2) (2022)
Emily A Kaelin, Cynthia Rodriguez, Carla Hall-Moore, Julie A Hoffmann, Laura A Linneman, I Malick Ndao, Barbara B Warner, Phillip I Tarr, Lori R Holtz, Efrem S Lim
Longitudinal gut virome analysis identifies specific viral signatures that precede necrotizing enterocolitis onset in preterm infants. Nature microbiology 7 (5) (2022)
Steven C Holland, Ajeet Bains, LaRinda A Holland, Matthew F Smith, Regan A Sullins, Nicholas J Mellor, Alexis W Thomas, Nathaniel Johnson, Vel Murugan, Efrem S Lim
SARS-CoV-2 Delta Variant N Gene Mutations Reduce Sensitivity to the TaqPath COVID-19 Multiplex Molecular Diagnostic Assay. Viruses 14 (6) (2022)
Punnag Saha, Peter T Skidmore, LaRinda A Holland, Ayan Mondal, Dipro Bose, Ratanesh K Seth, Kimberly Sullivan, Patricia A Janulewicz, Ronnie Horner, Nancy Klimas, Mitzi Nagarkatti, Prakash S Nagarkatti, Efrem S Lim, Saurabh Chatterjee
Andrographolide Attenuates Gut-Brain-Axis Associated Pathology in Gulf War Illness by Modulating Bacteriome-Virome Associated Inflammation and Microglia-Neuron Proinflammatory Crosstalk. Brain sciences 11 (7) (2021)
Rabia Maqsood, Joshua B Reus, Lily I Wu, LaRinda A Holland, Ruth Nduati, Dorothy Mbori-Ngacha, Elizabeth Maleche-Obimbo, Emily R Begnel, Soren Gantt, Ednah Ojee, Dalton Wamalwa, Grace John-Stewart, Jennifer Slyker, Dara A Lehman, Efrem S Lim
Breast Milk Virome and Bacterial Microbiome Resilience in Kenyan Women Living with HIV. mSystems 6 (2) (2021)
Kathleen Apakupakul, Sharon L Deem, Rabia Maqsood, Peeti Sithiyopasakul, David Wang, Efrem S Lim
Endogenization of a Prosimian Retrovirus during Lemur Evolution. Viruses 13 (3) (2021)
LaRinda A Holland, Emily A Kaelin, Rabia Maqsood, Bereket Estifanos, Lily I Wu, Arvind Varsani, Rolf U Halden, Brenda G Hogue, Matthew Scotch, Efrem S Lim
An 81 base-pair deletion in SARS-CoV-2 ORF7a identified from sentinel surveillance in Arizona (Jan-Mar 2020). medRxiv : the preprint server for health sciences (2020)
Jordan R Yaron, Sriram Ambadapadi, Liqiang Zhang, Ramani N Chavan, Scott A Tibbetts, Shahar Keinan, Darren P Martin, Juan Maldonado, Simona Kraberger, Amanda M Tafoya, Whitney L Bullard, Jacquelyn Kilbourne, Alison Stern-Harbutte, Rosa Krajmalnik-Brown, Barbara H Munk, Erling O Koppang, Efrem S Lim, Alexandra R Lucas
Immune protection is dependent on the gut microbiome in a lethal mouse gammaherpesviral infection. Scientific reports 10 (1) (2020)
Jason T Ladner, Brendan B Larsen, Jolene R Bowers, Crystal M Hepp, Evan Bolyen, Megan Folkerts, Krystal Sheridan, Ashlyn Pfeiffer, Hayley Yaglom, Darrin Lemmer, Jason W Sahl, Emily A Kaelin, Rabia Maqsood, Nicholas A Bokulich, Grace Quirk, Thomas D Watts, Kenneth K Komatsu, Victor Waddell, Efrem S Lim, J Gregory Caporaso, David M Engelthaler, Michael Worobey, Paul S Keim
An Early Pandemic Analysis of SARS-CoV-2 Population Structure and Dynamics in Arizona. mBio 11 (5) (2020)
LaRinda A Holland, Emily A Kaelin, Rabia Maqsood, Bereket Estifanos, Lily I Wu, Darren P Martin, Rolf U Halden, Brenda G Hogue, Matthew Scotch, Efrem S Lim
An 81-Nucleotide Deletion in SARS-CoV-2 ORF7a Identified from Sentinel Surveillance in Arizona (January to March 2020). Journal of virology 94 (14) (2020)
Ratanesh K Seth, Rabia Maqsood, Ayan Mondal, Dipro Bose, Diana Kimono, LaRinda A Holland, Patricia Janulewicz Lloyd, Nancy Klimas, Ronnie D Horner, Kimberly Sullivan, Efrem S Lim, Saurabh Chatterjee
Gut DNA Virome Diversity and Its Association with Host Bacteria Regulate Inflammatory Phenotype and Neuronal Immunotoxicity in Experimental Gulf War Illness. Viruses 11 (10) (2019)
Rina Amatya, Sharon L Deem, Ingrid J Porton, David Wang, Efrem S Lim
Complete Genome Sequence of Torque teno indri virus 1, a Novel Anellovirus in Blood from a Free-Living Lemur. Genome announcements 5 (30) (2017)

Efrem S Lim.css-eqlu8i{font-size:small;padding-left:4px;} (Efrem Lim)

Publication Activity (10 Years)

Top Topics

Top Venues

Efrem S Lim (Efrem Lim)