Mikel Hernaez

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 22

Top Topics

Transcription Factor

Radical Prostatectomy

Top Venues

Nature communications

Nucleic acids research

Communications biology

Genome research

This page only lists publications with an associated author ORCID identifier.

Publications

Guillermo Serrano, Nerea Berastegui, Aintzane Díaz-Mazkiaran, Paula Garcia-Olloqui, Carmen Rodriguez-Res, Sofia Huerga-Dominguez, Marina Ainciburu, Amaia Vilas-Zornoza, Patxi San Martin-Uriz, Paula Aguirre-Ruiz, Asier Ullate-Agote, Beñat Ariceta, Jose-Maria Lamo-Espinosa, Pamela Acha, Oriol Calvete, Tamara Jimenez, Antonieta Molero, Maria Julia Montoro, Maria Diez Campelo, David Valcarcel, Francisco Solé, Ana Alfonso, Idoia Ochoa, Felipe Prosper, Teresa Ezponda, Mikel Hernaez
Single-cell transcriptional profile of CD34+ hematopoietic progenitor cells from del(5q) myelodysplastic syndromes and impact of lenalidomide. Nature communications 15 (1) (2024)
Carlos Ruiz-Arenas, Irene Marín-Goñi, Liewei Wang, Idoia Ochoa, Luis A Pérez-Jurado, Mikel Hernaez
NetActivity enhances transcriptional signals by combining gene expression into robust gene set activity scores through interpretable autoencoders. Nucleic acids research 52 (9) (2024)
Guillermo Serrano, Nerea Berastegui, Aintzane Díaz-Mazkiaran, Paula Garcia-Olloqui, Carmen Rodriguez-Res, Sofia Huerga-Dominguez, Marina Ainciburu, Amaia Vilas-Zornoza, Patxi San Martin-Uriz, Paula Aguirre-Ruiz, Asier Ullate-Agote, Beñat Ariceta, Jose-Maria Lamo-Espinosa, Pamela Acha, Oriol Calvete, Tamara Jimenez, Antonieta Molero, Maria Julia Montoro, Maria Diez Campelo, David Valcarcel, Francisco Solé, Ana Alfonso, Idoia Ochoa, Felipe Prosper, Teresa Ezponda, Mikel Hernaez
Single-cell transcriptional profile of CD34+ hematopoietic progenitor cells from del(5q) myelodysplastic syndromes and impact of lenalidomide. Nature communications 15 (1) (2024)
Carlos Ruiz-Arenas, Irene Marín-Goñi, Liewei Wang, Idoia Ochoa, Luis A Pérez-Jurado, Mikel Hernaez
NetActivity enhances transcriptional signals by combining gene expression into robust gene set activity scores through interpretable autoencoders. Nucleic acids research 52 (9) (2024)
Carlos Ruiz-Arenas, Irene Marín-Goñi, Liewei Wang, Idoia Ochoa, Luis A Pérez-Jurado, Mikel Hernaez
NetActivity enhances transcriptional signals by combining gene expression into robust gene set activity scores through interpretable autoencoders. Nucleic acids research 52 (9) (2024)
Guillermo Serrano, Nerea Berastegui, Aintzane Díaz-Mazkiaran, Paula Garcia-Olloqui, Carmen Rodriguez-Res, Sofia Huerga-Dominguez, Marina Ainciburu, Amaia Vilas-Zornoza, Patxi San Martin-Uriz, Paula Aguirre-Ruiz, Asier Ullate-Agote, Beñat Ariceta, Jose-Maria Lamo-Espinosa, Pamela Acha, Oriol Calvete, Tamara Jimenez, Antonieta Molero, Maria Julia Montoro, Maria Diez Campelo, David Valcarcel, Francisco Solé, Ana Alfonso, Idoia Ochoa, Felipe Prosper, Teresa Ezponda, Mikel Hernaez
Single-cell transcriptional profile of CD34+ hematopoietic progenitor cells from del(5q) myelodysplastic syndromes and impact of lenalidomide. Nature communications 15 (1) (2024)
Maria Luisa Palacios-Berraquero, Paula Rodriguez-Marquez, Maria Eréndira Calleja-Cervantes, Nerea Berastegui, Aintzane Zabaleta, Leire Burgos, Diego Alignani, Patxi San Martin-Uriz, Amaia Vilas-Zornoza, Saray Rodriguez-Diaz, Susana I Inoges, Ascensión López-Diaz-de-Cerio, Sofia Huerga, Luis Esteban Tamariz-Amador, Jose J Rifon, Ana Alfonso, Juan Jose Lasarte, Juan José Lahuerta, Mikel Hernaez, Paula Rodriguez Otero, Jesús San F Miguel, Teresa Ezponda, Juan Roberto Rodriguez-Madoz, Felipe Prosper
Molecular mechanisms promoting long-term cytopenia after BCMA CAR-T therapy in Multiple Myeloma. Blood advances (2024)
Fabian Müntefering, Yeremia Gunawan Adhisantoso, Shubham Chandak, Jörn Ostermann, Mikel Hernaez, Jan Voges
Genie: the first open-source ISO/IEC encoder for genomic data. Communications biology 7 (1) (2024)
Carlos Ruiz-Arenas, Irene Marín-Goñi, Liewei Wang, Idoia Ochoa, Luis A Pérez-Jurado, Mikel Hernaez
NetActivity enhances transcriptional signals by combining gene expression into robust gene set activity scores through interpretable autoencoders. Nucleic acids research 52 (9) (2024)
Carlos Ruiz-Arenas, Irene Marín-Goñi, Liewei Wang, Idoia Ochoa, Luis A Pérez-Jurado, Mikel Hernaez
NetActivity enhances transcriptional signals by combining gene expression into robust gene set activity scores through interpretable autoencoders. Nucleic acids research (2024)
Fabian Müntefering, Yeremia Gunawan Adhisantoso, Shubham Chandak, Jörn Ostermann, Mikel Hernaez, Jan Voges
Genie: the first open-source ISO/IEC encoder for genomic data. Communications biology 7 (1) (2024)
Fabian Müntefering, Yeremia Gunawan Adhisantoso, Shubham Chandak, Jörn Ostermann, Mikel Hernaez, Jan Voges
Genie: the first open-source ISO/IEC encoder for genomic data. Communications biology 7 (1) (2024)
Guillermo Serrano, Nerea Berastegui, Aintzane Díaz-Mazkiaran, Paula Garcia-Olloqui, Carmen Rodriguez-Res, Sofia Huerga-Dominguez, Marina Ainciburu, Amaia Vilas-Zornoza, Patxi San Martin-Uriz, Paula Aguirre-Ruiz, Asier Ullate-Agote, Beñat Ariceta, Jose-Maria Lamo-Espinosa, Pamela Acha, Oriol Calvete, Tamara Jimenez, Antonieta Molero, Maria Julia Montoro, Maria Diez Campelo, David Valcarcel, Francisco Solé, Ana Alfonso, Idoia Ochoa, Felipe Prosper, Teresa Ezponda, Mikel Hernaez
Single-cell transcriptional profile of CD34+ hematopoietic progenitor cells from del(5q) myelodysplastic syndromes and impact of lenalidomide. Nature communications 15 (1) (2024)
Charles A Blatti, Jesús de la Fuente Cedeño, Huanyao Gao, Irene Marín-Goñi, Zikun Chen, Sihai Dave Zhao, Winston Tan, Richard M Weinshilboum, Krishna R Kalari, Liewei Wang, Mikel Hernaez
Bayesian machine learning enables identification of transcriptional network disruptions associated with drug-resistant prostate cancer. Cancer research (2023)
Ian M Traniello, Syed Abbas Bukhari, Payam Dibaeinia, Guillermo Serrano, Arián Avalos, Amy Cash Ahmed, Alison L Sankey, Mikel Hernaez, Saurabh Sinha, Sihai Dave Zhao, Julian M Catchen, Gene E Robinson
Single-cell dissection of aggression in honeybee colonies. Nature ecology & evolution (2023)
Nerea Berastegui, Marina Ainciburu, Juan P Romero, Paula Garcia-Olloqui, Ana Alfonso-Pierola, Céline Philippe, Amaia Vilas-Zornoza, Patxi San Martin-Uriz, Raquel Ruiz-Hernandez, Ander Abarrategi, Raquel Ordoñez, Diego Alignani, Sarai Sarvide, Laura Castro-Labrador, José M Lamo-Espinosa, Mikel San-Julián, Tamara Jimenez, Félix López-Cadenas, Sandra Muntion, Fermin M Sanchez-Guijo, Antonieta Molero, Maria Julia Montoro, Bárbara Tazón, Guillermo Serrano, Aintzane Diaz-Mazkiaran, Mikel Hernaez, Sofía Huerga, Findlay Bewicke-Copley, Ana Rio-Machin, Matthew T Maurano, Maria Diez Campelo, David Valcarcel, Kevin Rouault-Pierre, David Lara-Astiaso, Teresa Ezponda, Felipe Prosper
The transcription factor DDIT3 is a potential driver of dyserythropoiesis in myelodysplastic syndromes. Nature communications 13 (1) (2022)
Nerea Berastegui, Marina Ainciburu, Juan P Romero, Paula Garcia-Olloqui, Ana Alfonso-Pierola, Céline Philippe, Amaia Vilas-Zornoza, Patxi San Martin-Uriz, Raquel Ruiz-Hernandez, Ander Abarrategi, Raquel Ordoñez, Diego Alignani, Sarai Sarvide, Laura Castro-Labrador, José M Lamo-Espinosa, Mikel San-Julián, Tamara Jimenez, Félix López-Cadenas, Sandra Muntion, Fermin M Sanchez-Guijo, Antonieta Molero, Maria Julia Montoro, Bárbara Tazón, Guillermo Serrano, Aintzane Diaz-Mazkiaran, Mikel Hernaez, Sofía Huerga, Findlay Bewicke-Copley, Ana Rio-Machin, Matthew T Maurano, Maria Diez Campelo, David Valcarcel, Kevin Rouault-Pierre, David Lara-Astiaso, Teresa Ezponda, Felipe Prosper
The transcription factor DDIT3 is a potential driver of dyserythropoiesis in myelodysplastic syndromes. Nature communications 13 (1) (2022)
Nerea Berastegui, Marina Ainciburu, Juan P Romero, Paula Garcia-Olloqui, Ana Alfonso-Pierola, Céline Philippe, Amaia Vilas-Zornoza, Patxi San Martin-Uriz, Raquel Ruiz-Hernandez, Ander Abarrategi, Raquel Ordoñez, Diego Alignani, Sarai Sarvide, Laura Castro-Labrador, José M Lamo-Espinosa, Mikel San-Julián, Tamara Jimenez, Félix López-Cadenas, Sandra Muntion, Fermin M Sanchez-Guijo, Antonieta Molero, Maria Julia Montoro, Bárbara Tazón, Guillermo Serrano, Aintzane Diaz-Mazkiaran, Mikel Hernaez, Sofía Huerga, Findlay Bewicke-Copley, Ana Rio-Machin, Matthew T Maurano, Maria Diez Campelo, David Valcarcel, Kevin Rouault-Pierre, David Lara-Astiaso, Teresa Ezponda, Felipe Prosper
The transcription factor DDIT3 is a potential driver of dyserythropoiesis in myelodysplastic syndromes. Nature communications 13 (1) (2022)
Jianhao Peng, Guillermo Serrano, Ian M Traniello, Maria Eréndira Calleja-Cervantes, Ullas Valiya Chembazhi, Sushant Bangru, Teresa Ezponda, Juan Roberto Rodriguez-Madoz, Auinash Kalsotra, Felipe Prosper, Idoia Ochoa, Mikel Hernaez
SimiC enables the inference of complex gene regulatory dynamics across cell phenotypes. Communications biology 5 (1) (2022)
Paula Rodriguez-Marquez, Maria Eréndira Calleja-Cervantes, Guillermo Serrano, Marta Garrote, Maria L Palacios-Berraquero, Angel Martin-Mallo, Cristina Calviño-Sampedro, Marta Español-Rego, Candela Ceballos, Teresa Lozano, Patxi San Martin-Uriz, Amaia Vilas-Zornoza, Saray Rodriguez-Diaz, Rebeca Martinez-Turrillas, Patricia Jauregui, Diego Alignani, María Cruz Viguria, Margarita Redondo, Mariona Pascal, Beatriz Martin-Antonio, Manel Juan, Alvaro Urbano-Ispizua, Paula Rodriguez Otero, Ana Alfonso, Juan José Lahuerta, Juan Jose Lasarte, Susana Inoges, Ascensión López-Díaz de Cerio, Jesús San F Miguel, Carlos Fernández de Larrea, Mikel Hernaez, Juan Roberto Rodriguez-Madoz, Felipe Prosper
CAR density influences antitumoral efficacy of BCMA CAR T cells and correlates with clinical outcome. Science advances 8 (39) (2022)
Nerea Berastegui, Marina Ainciburu, Juan P Romero, Paula Garcia-Olloqui, Ana Alfonso-Pierola, Céline Philippe, Amaia Vilas-Zornoza, Patxi San Martin-Uriz, Raquel Ruiz-Hernandez, Ander Abarrategi, Raquel Ordoñez, Diego Alignani, Sarai Sarvide, Laura Castro-Labrador, José M Lamo-Espinosa, Mikel San-Julián, Tamara Jimenez, Félix López-Cadenas, Sandra Muntion, Fermin M Sanchez-Guijo, Antonieta Molero, Maria Julia Montoro, Bárbara Tazón, Guillermo Serrano, Aintzane Diaz-Mazkiaran, Mikel Hernaez, Sofía Huerga, Findlay Bewicke-Copley, Ana Rio-Machin, Matthew T Maurano, Maria Diez Campelo, David Valcarcel, Kevin Rouault-Pierre, David Lara-Astiaso, Teresa Ezponda, Felipe Prosper
The transcription factor DDIT3 is a potential driver of dyserythropoiesis in myelodysplastic syndromes. Nature communications 13 (1) (2022)
Ullas Valiya Chembazhi, Sushant Bangru, Mikel Hernaez, Auinash Kalsotra
Cellular plasticity balances the metabolic and proliferation dynamics of a regenerating liver. Genome research 31 (4) (2021)