Julian M Catchen (Julian Catchen)

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 33

Top Venues

Scientific reports

Genes

Molecular ecology resources

Nature ecology & evolution

University of Illinois at Urbana-Champaign

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Illinois at Urbana-Champaign Jan 05 2015

United States

Assistant Professor :: Evolution, Ecology, and Behavior

Publications

Kira M Long, Angel G Rivera-Colón, Kevin F P Bennett, Julian M Catchen, Michael J Braun, Jeffrey D Brawn
Ongoing introgression of a secondary sexual plumage trait in a stable avian hybrid zone. Evolution; international journal of organic evolution 78 (9) (2024)
Giovanni Madrigal, Bushra Fazal Minhas, Julian M Catchen
Klumpy: A tool to evaluate the integrity of long-read genome assemblies and illusive sequence motifs. Molecular ecology resources (2024)
Alida de Flamingh, Thomas P Gnoske, Angel G Rivera-Colón, Velizar A Simeonovski, Julian C Kerbis Peterhans, Nobuyuki Yamaguchi, Kelsey E Witt, Julian M Catchen, Alfred L Roca, Ripan Singh Malhi
Genomic analysis supports Cape Lion population connectivity prior to colonial eradication and extinction. The Journal of heredity 115 (2) (2024)
Kira M Long, Angel G Rivera-Colón, Kevin F P Bennett, Julian M Catchen, Michael J Braun, Jeffrey D Brawn
Ongoing introgression of a secondary sexual plumage trait in a stable avian hybrid zone. Evolution; international journal of organic evolution (2024)
Bushra Fazal Minhas, Emily A Beck, C-H Christina Cheng, Julian M Catchen
Novel mitochondrial genome rearrangements including duplications and extensive heteroplasmy could underlie temperature adaptations in Antarctic notothenioid fishes. Scientific reports 13 (1) (2023)
Bushra Fazal Minhas, Emily A Beck, C-H Christina Cheng, Julian M Catchen
Novel mitochondrial genome rearrangements including duplications and extensive heteroplasmy could underlie temperature adaptations in Antarctic notothenioid fishes. Scientific reports 13 (1) (2023)
Chi-Hing Christina Cheng, Angel G Rivera-Colón, Bushra Fazal Minhas, Loralee Wilson, Niraj Rayamajhi, Luis Vargas-Chacoff, Julian M Catchen
Chromosome-Level Genome Assembly and Circadian Gene Repertoire of the Patagonia Blennie Eleginops maclovinus -The Closest Ancestral Proxy of Antarctic Cryonotothenioids. Genes 14 (6) (2023)
Angel G Rivera-Colón, Niraj Rayamajhi, Bushra Fazal Minhas, Giovanni Madrigal, Kevin T Bilyk, Veronica Yoon, Mathias Hüne, Susan Gregory, C-H Christina Cheng, Julian M Catchen
Genomics of Secondarily Temperate Adaptation in the Only Non-Antarctic Icefish. Molecular biology and evolution (2023)
Angel G Rivera-Colón, Niraj Rayamajhi, Bushra Fazal Minhas, Giovanni Madrigal, Kevin T Bilyk, Veronica Yoon, Mathias Hüne, Susan Gregory, Chi-Hing Christina Cheng, Julian M Catchen
Genomics of Secondarily Temperate Adaptation in the Only Non-Antarctic Icefish. Molecular biology and evolution 40 (3) (2023)
Chi-Hing Christina Cheng, Angel G Rivera-Colón, Bushra Fazal Minhas, Loralee Wilson, Niraj Rayamajhi, Luis Vargas-Chacoff, Julian M Catchen
Chromosome-Level Genome Assembly and Circadian Gene Repertoire of the Patagonia Blennie Eleginops maclovinus -The Closest Ancestral Proxy of Antarctic Cryonotothenioids. Genes 14 (6) (2023)
Chi-Hing Christina Cheng, Angel G Rivera-Colón, Bushra Fazal Minhas, Loralee Wilson, Niraj Rayamajhi, Luis Vargas-Chacoff, Julian M Catchen
Chromosome-Level Genome Assembly and Circadian Gene Repertoire of the Patagonia Blennie Eleginops maclovinus -The Closest Ancestral Proxy of Antarctic Cryonotothenioids. Genes 14 (6) (2023)
Chi-Hing Christina Cheng, Angel G Rivera-Colón, Bushra Fazal Minhas, Loralee Wilson, Niraj Rayamajhi, Luis Vargas-Chacoff, Julian M Catchen
Chromosome-Level Genome Assembly and Circadian Gene Repertoire of the Patagonia Blennie Eleginops maclovinus -The Closest Ancestral Proxy of Antarctic Cryonotothenioids. Genes 14 (6) (2023)
Bushra Fazal Minhas, Emily A Beck, C-H Christina Cheng, Julian M Catchen
Novel mitochondrial genome rearrangements including duplications and extensive heteroplasmy could underlie temperature adaptations in Antarctic notothenioid fishes. Scientific reports 13 (1) (2023)
Ian M Traniello, Syed Abbas Bukhari, Payam Dibaeinia, Guillermo Serrano, Arián Avalos, Amy Cash Ahmed, Alison L Sankey, Mikel Hernaez, Saurabh Sinha, Sihai Dave Zhao, Julian M Catchen, Gene E Robinson
Single-cell dissection of aggression in honeybee colonies. Nature ecology & evolution (2023)
Nicolas C Rochette, Angel G Rivera-Colón, Jessica Walsh, Thomas J Sanger, Shane C Campbell-Staton, Julian M Catchen
On the causes, consequences, and avoidance of PCR duplicates: Towards a theory of library complexity. Molecular ecology resources (2023)
Bushra Fazal Minhas, Emily A Beck, C-H Christina Cheng, Julian M Catchen
Novel mitochondrial genome rearrangements including duplications and extensive heteroplasmy could underlie temperature adaptations in Antarctic notothenioid fishes. Scientific reports 13 (1) (2023)
Bushra Fazal Minhas, Emily A Beck, C-H Christina Cheng, Julian M Catchen
Novel mitochondrial genome rearrangements including duplications and extensive heteroplasmy could underlie temperature adaptations in Antarctic notothenioid fishes. Scientific reports 13 (1) (2023)
Niraj Rayamajhi, Chi-Hing Christina Cheng, Julian M Catchen
Evaluating Illumina-, Nanopore-, and PacBio-based genome assembly strategies with the bald notothen, Trematomus borchgrevinki. G3 (Bethesda, Md.) 12 (11) (2022)
Angel G Rivera-Colón, Julian M Catchen
Population Genomics Analysis with RAD, Reprised: Stacks 2. Methods in molecular biology (Clifton, N.J.) 2498 (2022)
Clayton M Small, Hope M Healey, Mark C Currey, Emily A Beck, Julian M Catchen, Angela S P Lin, William A Cresko, Susan Bassham
Leafy and weedy seadragon genomes connect genic and repetitive DNA features to the extravagant biology of syngnathid fishes. Proceedings of the National Academy of Sciences of the United States of America 119 (26) (2022)
José Cerca, Bent Petersen, José Miguel Lazaro-Guevara, Angel G Rivera-Colón, Siri Birkeland, Joel Vizueta, Siyu Li, Qionghou Li, João Loureiro, Chatchai Kosawang, Patricia Jaramillo Díaz, Gonzalo Rivas-Torres, Mario Fernández-Mazuecos, Pablo Vargas, Ross A McCauley, Gitte Petersen, Luisa Dos Santos Bay Nielsen, Nathan Wales, Julian M Catchen, Daniel Machado, Michael D Nowak, Alexander Suh, Neelima R Sinha, Lene Rostgaard Nielsen, Ole Seberg, M Thomas P Gilbert, James H Leebens-Mack, Loren H Rieseberg, Michael D Martin
The genomic basis of the plant island syndrome in Darwin's giant daisies. Nature communications 13 (1) (2022)
Julian M Catchen, Angel Amores, Susan Bassham
Chromonomer: A Tool Set for Repairing and Enhancing Assembled Genomes Through Integration of Genetic Maps and Conserved Synteny. G3 (Bethesda, Md.) 10 (11) (2020)
Shane C Campbell-Staton, Kristin M Winchell, Nicolas C Rochette, Jason Fredette, Inbar Maayan, Rena M Schweizer, Julian M Catchen
Parallel selection on thermal physiology facilitates repeated adaptation of city lizards to urban heat islands. Nature ecology & evolution 4 (4) (2020)
Angel G Rivera-Colón, Nicolas C Rochette, Julian M Catchen
Simulation with RADinitio improves RADseq experimental design and sheds light on sources of missing data. Molecular ecology resources 21 (2) (2020)
Nicolas C Rochette, Angel G Rivera-Colón, Julian M Catchen
Stacks 2: Analytical methods for paired-end sequencing improve RADseq-based population genomics. Molecular ecology 28 (21) (2019)
Bo-Mi Kim, Angel Amores, Seunghyun Kang, Do-Hwan Ahn, Jin-Hyoung Kim, Il-Chan Kim, Jun Hyuck Lee, Sung Gu Lee, Hyoungseok Lee, Jungeun Lee, Han-Woo Kim, Thomas Desvignes, Peter Batzel, Jason Sydes, Tom Titus, Catherine A Wilson, Julian M Catchen, Wesley C Warren, Manfred Schartl, Harry William Detrich, John H Postlethwait, Hyun Park
Antarctic blackfin icefish genome reveals adaptations to extreme environments. Nature ecology & evolution 3 (3) (2019)
Thomas C Nelson, Johnathan G Crandall, Catherine M Ituarte, Julian M Catchen, William A Cresko
Selection, Linkage, and Population Structure Interact To Shape Genetic Variation Among Threespine Stickleback Genomes. Genetics 212 (4) (2019)
Julian M Catchen
When structure leads to sex: Untangling signals in population genetic data sets. Molecular ecology 26 (24) (2018)
Susan Bassham, Julian M Catchen, Emily A Lescak, Frank Arthur von Hippel, William A Cresko
Repeated Selection of Alternatively Adapted Haplotypes Creates Sweeping Genomic Remodeling in Stickleback. Genetics 209 (3) (2018)
Rachel L Moran, Muchu Zhou, Julian M Catchen, Rebecca C Fuller
Hybridization and postzygotic isolation promote reinforcement of male mating preferences in a diverse group of fishes with traditional sex roles. Ecology and evolution 8 (18) (2018)
Julian M Catchen, Paul A Hohenlohe, Louis Bernatchez, W Chris Funk, Kimberly R Andrews, Fred W Allendorf
Unbroken: RADseq remains a powerful tool for understanding the genetics of adaptation in natural populations. Molecular ecology resources 17 (3) (2017)
Shane C Campbell-Staton, Zachary A Cheviron, Nicolas C Rochette, Julian M Catchen, Jonathan B Losos, Scott V Edwards
Winter storms drive rapid phenotypic, regulatory, and genomic shifts in the green anole lizard. Science (New York, N.Y.) 357 (6350) (2017)
Nicolas C Rochette, Julian M Catchen
Deriving genotypes from RAD-seq short-read data using Stacks. Nature protocols 12 (12) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Julian M Catchen (Julian Catchen)