Idoia Ochoa

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 17

Top Topics

Chronic Lymphocytic Leukemia

Genome Wide Analysis

Gene Expression

Top Venues

Nature communications

Nucleic acids research

Acta ophthalmologica

This page only lists publications with an associated author ORCID identifier.

Publications

Guillermo Serrano, Nerea Berastegui, Aintzane Díaz-Mazkiaran, Paula Garcia-Olloqui, Carmen Rodriguez-Res, Sofia Huerga-Dominguez, Marina Ainciburu, Amaia Vilas-Zornoza, Patxi San Martin-Uriz, Paula Aguirre-Ruiz, Asier Ullate-Agote, Beñat Ariceta, Jose-Maria Lamo-Espinosa, Pamela Acha, Oriol Calvete, Tamara Jimenez, Antonieta Molero, Maria Julia Montoro, Maria Diez Campelo, David Valcarcel, Francisco Solé, Ana Alfonso, Idoia Ochoa, Felipe Prosper, Teresa Ezponda, Mikel Hernaez
Single-cell transcriptional profile of CD34+ hematopoietic progenitor cells from del(5q) myelodysplastic syndromes and impact of lenalidomide. Nature communications 15 (1) (2024)
Carlos Ruiz-Arenas, Irene Marín-Goñi, Liewei Wang, Idoia Ochoa, Luis A Pérez-Jurado, Mikel Hernaez
NetActivity enhances transcriptional signals by combining gene expression into robust gene set activity scores through interpretable autoencoders. Nucleic acids research 52 (9) (2024)
Guillermo Serrano, Nerea Berastegui, Aintzane Díaz-Mazkiaran, Paula Garcia-Olloqui, Carmen Rodriguez-Res, Sofia Huerga-Dominguez, Marina Ainciburu, Amaia Vilas-Zornoza, Patxi San Martin-Uriz, Paula Aguirre-Ruiz, Asier Ullate-Agote, Beñat Ariceta, Jose-Maria Lamo-Espinosa, Pamela Acha, Oriol Calvete, Tamara Jimenez, Antonieta Molero, Maria Julia Montoro, Maria Diez Campelo, David Valcarcel, Francisco Solé, Ana Alfonso, Idoia Ochoa, Felipe Prosper, Teresa Ezponda, Mikel Hernaez
Single-cell transcriptional profile of CD34+ hematopoietic progenitor cells from del(5q) myelodysplastic syndromes and impact of lenalidomide. Nature communications 15 (1) (2024)
Carlos Ruiz-Arenas, Irene Marín-Goñi, Liewei Wang, Idoia Ochoa, Luis A Pérez-Jurado, Mikel Hernaez
NetActivity enhances transcriptional signals by combining gene expression into robust gene set activity scores through interpretable autoencoders. Nucleic acids research 52 (9) (2024)
Carlos Ruiz-Arenas, Irene Marín-Goñi, Liewei Wang, Idoia Ochoa, Luis A Pérez-Jurado, Mikel Hernaez
NetActivity enhances transcriptional signals by combining gene expression into robust gene set activity scores through interpretable autoencoders. Nucleic acids research 52 (9) (2024)
Guillermo Serrano, Nerea Berastegui, Aintzane Díaz-Mazkiaran, Paula Garcia-Olloqui, Carmen Rodriguez-Res, Sofia Huerga-Dominguez, Marina Ainciburu, Amaia Vilas-Zornoza, Patxi San Martin-Uriz, Paula Aguirre-Ruiz, Asier Ullate-Agote, Beñat Ariceta, Jose-Maria Lamo-Espinosa, Pamela Acha, Oriol Calvete, Tamara Jimenez, Antonieta Molero, Maria Julia Montoro, Maria Diez Campelo, David Valcarcel, Francisco Solé, Ana Alfonso, Idoia Ochoa, Felipe Prosper, Teresa Ezponda, Mikel Hernaez
Single-cell transcriptional profile of CD34+ hematopoietic progenitor cells from del(5q) myelodysplastic syndromes and impact of lenalidomide. Nature communications 15 (1) (2024)
Sergio Barace, Eva Santamaría, Stefany Fiorella Infante Varillas, Sara Arcelus, Jesus De La Fuente, Enrique Goñi, Ibon Tamayo, Idoia Ochoa, Miguel Sogbe, Bruno Sangro, Mikel Hernaez, Matias A Avila, Josepmaria Argemi
Application of Graph Models to the Identification of Transcriptomic Oncometabolic Pathways in Human Hepatocellular Carcinoma. Biomolecules 14 (6) (2024)
Sergio Barace, Eva Santamaría, Stefany Fiorella Infante Varillas, Sara Arcelus, Jesus De La Fuente, Enrique Goñi, Ibon Tamayo, Idoia Ochoa, Miguel Sogbe, Bruno Sangro, Mikel Hernaez, Matias A Avila, Josepmaria Argemi
Application of Graph Models to the Identification of Transcriptomic Oncometabolic Pathways in Human Hepatocellular Carcinoma. Biomolecules 14 (6) (2024)
Carlos Ruiz-Arenas, Irene Marín-Goñi, Liewei Wang, Idoia Ochoa, Luis A Pérez-Jurado, Mikel Hernaez
NetActivity enhances transcriptional signals by combining gene expression into robust gene set activity scores through interpretable autoencoders. Nucleic acids research 52 (9) (2024)
Carlos Ruiz-Arenas, Irene Marín-Goñi, Liewei Wang, Idoia Ochoa, Luis A Pérez-Jurado, Mikel Hernaez
NetActivity enhances transcriptional signals by combining gene expression into robust gene set activity scores through interpretable autoencoders. Nucleic acids research (2024)
Guillermo Serrano, Nerea Berastegui, Aintzane Díaz-Mazkiaran, Paula Garcia-Olloqui, Carmen Rodriguez-Res, Sofia Huerga-Dominguez, Marina Ainciburu, Amaia Vilas-Zornoza, Patxi San Martin-Uriz, Paula Aguirre-Ruiz, Asier Ullate-Agote, Beñat Ariceta, Jose-Maria Lamo-Espinosa, Pamela Acha, Oriol Calvete, Tamara Jimenez, Antonieta Molero, Maria Julia Montoro, Maria Diez Campelo, David Valcarcel, Francisco Solé, Ana Alfonso, Idoia Ochoa, Felipe Prosper, Teresa Ezponda, Mikel Hernaez
Single-cell transcriptional profile of CD34+ hematopoietic progenitor cells from del(5q) myelodysplastic syndromes and impact of lenalidomide. Nature communications 15 (1) (2024)
Jesús de la Fuente Cedeño, Sara Llorente-González, Patricia Fernández-Robredo, María Hernandez, Alfredo García-Layana, Idoia Ochoa, Sergio Recalde-Maestre, null null
Suitability of machine learning for atrophy and fibrosis development in neovascular age-related macular degeneration. Acta ophthalmologica 102 (5) (2023)
Jesús de la Fuente Cedeño, Sara Llorente-González, Patricia Fernández-Robredo, María Hernandez, Alfredo García-Layana, Idoia Ochoa, Sergio Recalde-Maestre, null null
Suitability of machine learning for atrophy and fibrosis development in neovascular age-related macular degeneration. Acta ophthalmologica (2023)
Mohit Goyal, Guillermo Serrano, Josepmaria Argemi, Ilan Shomorony, Mikel Hernaez, Idoia Ochoa
JIND: joint integration and discrimination for automated single-cell annotation. Bioinformatics (Oxford, England) 38 (9) (2022)
Jianhao Peng, Guillermo Serrano, Ian M Traniello, Maria Eréndira Calleja-Cervantes, Ullas Valiya Chembazhi, Sushant Bangru, Teresa Ezponda, Juan Roberto Rodriguez-Madoz, Auinash Kalsotra, Felipe Prosper, Idoia Ochoa, Mikel Hernaez
SimiC enables the inference of complex gene regulatory dynamics across cell phenotypes. Communications biology 5 (1) (2022)
Chuanyi Zhang, Mohammed El-Kebir, Idoia Ochoa
Moss enables high sensitivity single-nucleotide variant calling from multiple bulk DNA tumor samples. Nature communications 12 (1) (2021)
Ruochen Yang, Xi Chen, Idoia Ochoa
MassComp, a lossless compressor for mass spectrometry data. BMC bioinformatics 20 (1) (2019)