Mitsunori Ikeguchi

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 30

Top Topics

Molecular Dynamics Simulations

Machine Learning

Respiratory Syndrome Coronavirus

Top Venues

Journal of chemical information and modeling

Nature communications

The journal of physical chemistry. B

This page only lists publications with an associated author ORCID identifier.

Publications

Masao Inoue, Toru Ekimoto, Tsutomu Yamane, Mitsunori Ikeguchi
Computational Analysis of Activation of Dimerized Epidermal Growth Factor Receptor Kinase Using the String Method and Markov State Model. Journal of chemical information and modeling (2024)
Syeda Rubaiya Nasrin, Takefumi Yamashita, Mitsunori Ikeguchi, Takayuki Torisawa, Kazuhiro Oiwa, Kazuki Sada, Akira Kakugo
Tensile Stress on Microtubules Facilitates Dynein-Driven Cargo Transport. Nano letters (2024)
Syeda Rubaiya Nasrin, Takefumi Yamashita, Mitsunori Ikeguchi, Takayuki Torisawa, Kazuhiro Oiwa, Kazuki Sada, Akira Kakugo
Tensile Stress on Microtubules Facilitates Dynein-Driven Cargo Transport. Nano letters 24 (30) (2024)
Masao Inoue, Toru Ekimoto, Tsutomu Yamane, Mitsunori Ikeguchi
Computational Analysis of Activation of Dimerized Epidermal Growth Factor Receptor Kinase Using the String Method and Markov State Model. Journal of chemical information and modeling 64 (9) (2024)
Masao Inoue, Toru Ekimoto, Tsutomu Yamane, Mitsunori Ikeguchi
Computational Analysis of Activation of Dimerized Epidermal Growth Factor Receptor Kinase Using the String Method and Markov State Model. Journal of chemical information and modeling 64 (9) (2024)
Naoki Ogawa, Masateru Ohta, Mitsunori Ikeguchi
Conformational Selectivity of ITK Inhibitors: Insights from Molecular Dynamics Simulations. Journal of chemical information and modeling (2023)
Tsubasa Tanaka, Toru Ekimoto, Meri Nagatomo, Makiko Neyazaki, Erena Shimoji, Tsutomu Yamane, Sakura Kanagawa, Rika Oi, Emiko Mihara, Junichi Takagi, Satoko Akashi, Mitsunori Ikeguchi, Terukazu Nogi
Hybrid in vitro/in silico analysis of low-affinity protein-protein interactions that regulate signal transduction by Sema6D. Protein science : a publication of the Protein Society 31 (11) (2022)
Kei Moritsugu, Toru Ekimoto, Mitsunori Ikeguchi, Akinori Kidera
Binding and Unbinding Pathways of Peptide Substrates on the SARS-CoV-2 3CL Protease. Journal of chemical information and modeling (2022)
Kei Moritsugu, Toru Ekimoto, Mitsunori Ikeguchi, Akinori Kidera
Binding and Unbinding Pathways of Peptide Substrates on the SARS-CoV-2 3CL Protease. Journal of chemical information and modeling 63 (1) (2022)
Kei Moritsugu, Toru Ekimoto, Mitsunori Ikeguchi, Akinori Kidera
Binding and Unbinding Pathways of Peptide Substrates on the SARS-CoV-2 3CL Protease. Journal of chemical information and modeling 63 (1) (2022)
Kazu Osaki, Toru Ekimoto, Tsutomu Yamane, Mitsunori Ikeguchi
3D-RISM-AI: A Machine Learning Approach to Predict Protein-Ligand Binding Affinity Using 3D-RISM. The journal of physical chemistry. B 126 (33) (2022)
Kosuke Kawama, Yusaku Fukushima, Mitsunori Ikeguchi, Masateru Ohta, Takashi Yoshidome
gr Predictor: A Deep Learning Model for Predicting the Hydration Structures around Proteins. Journal of chemical information and modeling 62 (18) (2022)
Kei Moritsugu, Toru Ekimoto, Mitsunori Ikeguchi, Akinori Kidera
Binding and Unbinding Pathways of Peptide Substrates on the SARS-CoV-2 3CL Protease. Journal of chemical information and modeling 63 (1) (2022)
Kohei Sato, Ryo Sasaki, Ryoto Matsuda, Mayuko Nakagawa, Toru Ekimoto, Tsutomu Yamane, Mitsunori Ikeguchi, Kazuhito V Tabata, Hiroyuki Noji, Kazushi Kinbara
Correction to "Supramolecular Mechanosensitive Potassium Channel Formed by Fluorinated Amphiphilic Cyclophane". Journal of the American Chemical Society 144 (30) (2022)
Kei Takedomi, Masateru Ohta, Toru Ekimoto, Mitsunori Ikeguchi
Effect of Water Molecules on the Activating S810L Mutation of the Mineralocorticoid Receptor. Journal of chemical information and modeling 61 (7) (2021)
Risako Tamura-Sakaguchi, Rie Aruga, Mika Hirose, Toru Ekimoto, Takuya Miyake, Yohei Hizukuri, Rika Oi, Mika K Kaneko, Yukinari Kato, Yoshinori Akiyama, Mitsunori Ikeguchi, Kenji Iwasaki, Terukazu Nogi
Moving toward generalizable NZ-1 labeling for 3D structure determination with optimized epitope-tag insertion. Acta crystallographica. Section D, Structural biology 77 (Pt 5) (2021)
Toru Ekimoto, Takafumi Kudo, Tsutomu Yamane, Mitsunori Ikeguchi
Mechanism of Vitamin D Receptor Ligand-Binding Domain Regulation Studied by gREST Simulations. Journal of chemical information and modeling 61 (7) (2021)
Keijun Kakihara, Kengo Asamizu, Kei Moritsugu, Masahide Kubo, Tetsuya Kitaguchi, Akinori Endo, Akinori Kidera, Mitsunori Ikeguchi, Akira Kato, Masayuki Komada, Toshiaki Fukushima
Molecular basis of ubiquitin-specific protease 8 autoinhibition by the WW-like domain. Communications biology 4 (1) (2021)
Syeda Rubaiya Nasrin, Christian Ganser, Seiji Nishikawa, Arif Md Rashedul Kabir, Kazuki Sada, Takefumi Yamashita, Mitsunori Ikeguchi, Takayuki Uchihashi, Henry Hess, Akira Kakugo
Deformation of microtubules regulates translocation dynamics of kinesin. Science advances 7 (42) (2021)
Takashi Yoshidome, Mitsunori Ikeguchi, Masateru Ohta
Comprehensive 3D-RISM analysis of the hydration of small molecule binding sites in ligand-free protein structures. Journal of computational chemistry 41 (28) (2020)
Koichiro Kato, Tomohide Masuda, Chiduru Watanabe, Naoki Miyagawa, Hideo Mizouchi, Shumpei Nagase, Kikuko Kamisaka, Kanji Oshima, Satoshi Ono, Hiroshi Ueda, Atsushi Tokuhisa, Ryo Kanada, Masateru Ohta, Mitsunori Ikeguchi, Yasushi Okuno, Kaori Fukuzawa, Teruki Honma
High-Precision Atomic Charge Prediction for Protein Systems Using Fragment Molecular Orbital Calculation and Machine Learning. Journal of chemical information and modeling 60 (7) (2020)
Shingo Tojo, Zhikuan Zhang, Hiroyuki Matsui, Masahiro Tahara, Mitsunori Ikeguchi, Mami Kochi, Mami Kamada, Hideki Shigematsu, Akihisa Tsutsumi, Naruhiko Adachi, Takuma Shibata, Masaki Yamamoto, Masahide Kikkawa, Toshiya Senda, Yoshiaki Isobe, Umeharu Ohto, Toshiyuki Shimizu
Structural analysis reveals TLR7 dynamics underlying antagonism. Nature communications 11 (1) (2020)
Takahiro Muraoka, Daiki Noguchi, Rinshi S Kasai, Kohei Sato, Ryo Sasaki, Kazuhito V Tabata, Toru Ekimoto, Mitsunori Ikeguchi, Kiyoto Kamagata, Norihisa Hoshino, Hiroyuki Noji, Tomoyuki Akutagawa, Kazuaki Ichimura, Kazushi Kinbara
A synthetic ion channel with anisotropic ligand response. Nature communications 11 (1) (2020)
Miki Mori, Kohei Sato, Toru Ekimoto, Shinichi Okumura, Mitsunori Ikeguchi, Kazuhito V Tabata, Hiroyuki Noji, Kazushi Kinbara
Imidazolinium-based Multiblock Amphiphile as Transmembrane Anion Transporter. Chemistry, an Asian journal 16 (2) (2020)
Kentaro Ito, Yasuto Murayama, Yumiko Kurokawa, Shuji Kanamaru, Yuichi Kokabu, Takahisa Maki, Tsutomu Mikawa, Bilge Argunhan, Hideo Tsubouchi, Mitsunori Ikeguchi, Masayuki Takahashi, Hiroshi Iwasaki
Real-time tracking reveals catalytic roles for the two DNA binding sites of Rad51. Nature communications 11 (1) (2020)
Tatsuya Yamada, Tomohiko Hayashi, Simon Hikiri, Naohiro Kobayashi, Hiroshi Yanagawa, Mitsunori Ikeguchi, Masato Katahira, Takashi Nagata, Masahiro Kinoshita
How Does the Recently Discovered Peptide MIP Exhibit Much Higher Binding Affinity than an Anticancer Protein p53 for an Oncoprotein MDM2? Journal of chemical information and modeling 59 (8) (2019)
Koji Yonekura, Rei Matsuoka, Yoshiki Yamashita, Tsutomu Yamane, Mitsunori Ikeguchi, Akinori Kidera, Saori Maki-Yonekura
Ionic scattering factors of atoms that compose biological molecules. IUCrJ 5 (Pt 3) (2018)
Toru Ekimoto, Tsutomu Yamane, Mitsunori Ikeguchi
Elimination of Finite-Size Effects on Binding Free Energies via the Warp-Drive Method. Journal of chemical theory and computation 14 (12) (2018)
Yuta Kajiwara, Satoshi Yasuda, Simon Hikiri, Tomohiko Hayashi, Mitsunori Ikeguchi, Takeshi Murata, Masahiro Kinoshita
Physical Origin of Thermostabilization by a Quadruple Mutation for the Adenosine A2a Receptor in the Active State. The journal of physical chemistry. B 122 (16) (2018)
Toru Ekimoto, Mitsunori Ikeguchi
Multiscale molecular dynamics simulations of rotary motor proteins. Biophysical reviews 10 (2) (2017)