Pau Badia-I-Mompel

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 13

Top Topics

Convolutional Neural Network

Transcription Factor

Top Venues

Nature communications

Nucleic acids research

Bioinformatics advances

Nature cell biology

This page only lists publications with an associated author ORCID identifier.

Publications

Victor Paton, Ricardo Omar Ramirez Flores, Attila Gabor, Pau Badia-I-Mompel, Jovan Tanevski, Martín Garrido-Rodriguez, Julio Saez-Rodriguez
Assessing the impact of transcriptomics data analysis pipelines on downstream functional enrichment results. Nucleic acids research (2024)
Victor Paton, Ricardo Omar Ramirez Flores, Attila Gabor, Pau Badia-I-Mompel, Jovan Tanevski, Martín Garrido-Rodriguez, Julio Saez-Rodriguez
Assessing the impact of transcriptomics data analysis pipelines on downstream functional enrichment results. Nucleic acids research 52 (14) (2024)
Victor Paton, Ricardo Omar Ramirez Flores, Attila Gabor, Pau Badia-I-Mompel, Jovan Tanevski, Martín Garrido-Rodriguez, Julio Saez-Rodriguez
Assessing the impact of transcriptomics data analysis pipelines on downstream functional enrichment results. Nucleic acids research 52 (14) (2024)
Yuvarani Masarapu, Egle Cekanaviciute, Zaneta Andrusivova, Jakub Orzechowski Westholm, Åsa K Björklund, Robin Fallegger, Pau Badia-I-Mompel, Valery Boyko, Shubha Vasisht, Amanda Saravia-Butler, Samrawit Gebre, Enikő Lázár, Marta Graziano, Solène Frapard, Robert G Hinshaw, Olaf Bergmann, Deanne M Taylor, Douglas C Wallace, Christer Sylvén, Konstantinos Meletis, Julio Saez-Rodriguez, Jonathan M Galazka, Sylvain V Costes, Stefania Giacomello
Spatially resolved multiomics on the neuronal effects induced by spaceflight in mice. Nature communications 15 (1) (2024)
Yuvarani Masarapu, Egle Cekanaviciute, Zaneta Andrusivova, Jakub Orzechowski Westholm, Åsa K Björklund, Robin Fallegger, Pau Badia-I-Mompel, Valery Boyko, Shubha Vasisht, Amanda Saravia-Butler, Samrawit Gebre, Enikő Lázár, Marta Graziano, Solène Frapard, Robert G Hinshaw, Olaf Bergmann, Deanne M Taylor, Douglas C Wallace, Christer Sylvén, Konstantinos Meletis, Julio Saez-Rodriguez, Jonathan M Galazka, Sylvain V Costes, Stefania Giacomello
Spatially resolved multiomics on the neuronal effects induced by spaceflight in mice. Nature communications 15 (1) (2024)
Yuvarani Masarapu, Egle Cekanaviciute, Zaneta Andrusivova, Jakub Orzechowski Westholm, Åsa K Björklund, Robin Fallegger, Pau Badia-I-Mompel, Valery Boyko, Shubha Vasisht, Amanda Saravia-Butler, Samrawit Gebre, Enikő Lázár, Marta Graziano, Solène Frapard, Robert G Hinshaw, Olaf Bergmann, Deanne M Taylor, Douglas C Wallace, Christer Sylvén, Konstantinos Meletis, Julio Saez-Rodriguez, Jonathan M Galazka, Sylvain V Costes, Stefania Giacomello
Spatially resolved multiomics on the neuronal effects induced by spaceflight in mice. Nature communications 15 (1) (2024)
Daniel Dimitrov, Philipp Sven Lars Schäfer, Elias Farr, Pablo Rodríguez-Mier, Sebastian Lobentanzer, Pau Badia-I-Mompel, Aurelien Dugourd, Jovan Tanevski, Ricardo Omar Ramirez Flores, Julio Saez-Rodriguez
LIANA+ provides an all-in-one framework for cell-cell communication inference. Nature cell biology (2024)
Pau Badia-I-Mompel, Lorna Wessels, Sophia Müller-Dott, Rémi Trimbour, Ricardo Omar Ramirez Flores, Ricard Argelaguet, Julio Saez-Rodriguez
Gene regulatory network inference in the era of single-cell multi-omics. Nature reviews. Genetics (2023)
Sophia Müller-Dott, Eirini Tsirvouli, Miguel Vazquez, Ricardo Omar Ramirez Flores, Pau Badia-I-Mompel, Robin Fallegger, Dénes Türei, Astrid Lægreid, Julio Saez-Rodriguez
Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities. Nucleic acids research (2023)
Pau Badia-I-Mompel, Jesús Vélez Santiago, Jana Braunger, Celina Geiss, Daniel Dimitrov, Sophia Müller-Dott, Petr Taus, Aurelien Dugourd, Christian H Holland, Ricardo O Ramirez Flores, Julio Saez-Rodriguez
decoupleR: ensemble of computational methods to infer biological activities from omics data. Bioinformatics advances 2 (1) (2022)
Pau Badia-I-Mompel, Jesús Vélez Santiago, Jana Braunger, Celina Geiss, Daniel Dimitrov, Sophia Müller-Dott, Petr Taus, Aurelien Dugourd, Christian H Holland, Ricardo O Ramirez Flores, Julio Saez-Rodriguez
decoupleR: ensemble of computational methods to infer biological activities from omics data. Bioinformatics advances 2 (1) (2022)
Nicola Wanner, Geoffroy Andrieux, Pau Badia-I-Mompel, Carolin Edler, Susanne Pfefferle, Maja T Lindenmeyer, Christian Schmidt-Lauber, Jan Czogalla, Milagros N Wong, Yusuke Okabayashi, Fabian Braun, Marc Lütgehetmann, Elisabeth Meister, Shun Lu, Maria L M Noriega, Thomas Günther, Adam Grundhoff, Nicole Fischer, Hanna Bräuninger, Diana Lindner, Dirk Westermann, Fabian Haas, Kevin Roedl, Stefan Kluge, Marylyn Martina Addo, Samuel Huber, Ansgar W Lohse, Jochen Reiser, Benjamin Ondruschka, Jan P Sperhake, Julio Saez-Rodriguez, Melanie Boerries, Salim Salim Hayek, Martin Aepfelbacher, Pietro Scaturro, Victor G Puelles, Tobias B Huber
Molecular consequences of SARS-CoV-2 liver tropism. Nature metabolism 4 (3) (2022)
Martino Bertoni, Miquel Duran-Frigola, Pau Badia-I-Mompel, Eduardo Pauls, Modesto Orozco-Ruiz, Oriol Guitart-Pla, Víctor Alcalde, Víctor M Diaz, Antoni Berenguer Llergo, Isabelle Brun Heath, Nuria Villegas, Antonio García de Herreros, Patrick Aloy
Bioactivity descriptors for uncharacterized chemical compounds. Nature communications 12 (1) (2021)