Ricardo Omar Ramirez Flores (Ricardo O Ramirez Flores)

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 15

Top Topics

Transcription Factor

Top Venues

Nucleic acids research

Physiology (Bethesda, Md.)

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Victor Paton, Ricardo Omar Ramirez Flores, Attila Gabor, Pau Badia-I-Mompel, Jovan Tanevski, Martín Garrido-Rodriguez, Julio Saez-Rodriguez
Assessing the impact of transcriptomics data analysis pipelines on downstream functional enrichment results. Nucleic acids research (2024)
Victor Paton, Ricardo Omar Ramirez Flores, Attila Gabor, Pau Badia-I-Mompel, Jovan Tanevski, Martín Garrido-Rodriguez, Julio Saez-Rodriguez
Assessing the impact of transcriptomics data analysis pipelines on downstream functional enrichment results. Nucleic acids research 52 (14) (2024)
Victor Paton, Ricardo Omar Ramirez Flores, Attila Gabor, Pau Badia-I-Mompel, Jovan Tanevski, Martín Garrido-Rodriguez, Julio Saez-Rodriguez
Assessing the impact of transcriptomics data analysis pipelines on downstream functional enrichment results. Nucleic acids research 52 (14) (2024)
Daniel Dimitrov, Philipp Sven Lars Schäfer, Elias Farr, Pablo Rodríguez-Mier, Sebastian Lobentanzer, Pau Badia-I-Mompel, Aurelien Dugourd, Jovan Tanevski, Ricardo Omar Ramirez Flores, Julio Saez-Rodriguez
LIANA+ provides an all-in-one framework for cell-cell communication inference. Nature cell biology (2024)
Ricardo Omar Ramirez Flores, Philipp Sven Lars Schäfer, Leonie Küchenhoff, Julio Saez-Rodriguez
Complementing Cell Taxonomies with a Multicellular Analysis of Tissues. Physiology (Bethesda, Md.) 39 (3) (2024)
Ricardo Omar Ramirez Flores, Philipp Sven Lars Schäfer, Leonie Küchenhoff, Julio Saez-Rodriguez
Complementing Cell Taxonomies with a Multicellular Analysis of Tissues. Physiology (Bethesda, Md.) 39 (3) (2024)
Ricardo Omar Ramirez Flores, Philipp Sven Lars Schäfer, Leonie Küchenhoff, Julio Saez-Rodriguez
Complementing Cell Taxonomies with a Multicellular Analysis of Tissues. Physiology (Bethesda, Md.) 39 (3) (2024)
Jan D Lanzer, Laura M Wienecke, Ricardo Omar Ramirez Flores, Maura M Zylla, Celina Kley, Niklas Hartmann, Florian Sicklinger, Jobst-Hendrik Schultz, Norbert Frey, Julio Saez-Rodriguez, Florian Leuschner
Single-cell transcriptomics reveal distinctive patterns of fibroblast activation in heart failure with preserved ejection fraction. Basic research in cardiology (2024)
Ricardo Omar Ramirez Flores, Jan David Lanzer, Daniel Dimitrov, Britta Velten, Julio Saez-Rodriguez
Multicellular factor analysis of single-cell data for a tissue-centric understanding of disease. eLife 12 (2023)
Pau Badia-I-Mompel, Lorna Wessels, Sophia Müller-Dott, Rémi Trimbour, Ricardo Omar Ramirez Flores, Ricard Argelaguet, Julio Saez-Rodriguez
Gene regulatory network inference in the era of single-cell multi-omics. Nature reviews. Genetics (2023)
Sophia Müller-Dott, Eirini Tsirvouli, Miguel Vazquez, Ricardo Omar Ramirez Flores, Pau Badia-I-Mompel, Robin Fallegger, Dénes Türei, Astrid Lægreid, Julio Saez-Rodriguez
Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities. Nucleic acids research (2023)
Sara M Parigi, Ludvig Larsson, Srustidhar Das, Ricardo Omar Ramirez Flores, Annika Frede, Kumar P Tripathi, Oscar E Diaz, Katja A Selin, Rodrigo A Morales, Xinxin Luo, Gustavo Monasterio, Camilla Engblom, Nicola Gagliani, Julio Saez-Rodriguez, Joakim Lundeberg, Eduardo J Villablanca
The spatial transcriptomic landscape of the healing mouse intestine following damage. Nature communications 13 (1) (2022)
Daniel Dimitrov, Dénes Türei, Martín Garrido-Rodriguez, Paul L Burmedi, James S Nagai, Charlotte Boys, Ricardo Omar Ramirez Flores, Hyojin Kim, Bence Szalai, Ivan G Costa, Alberto Valdeolivas, Aurélien Dugourd, Julio Saez-Rodriguez
Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data. Nature communications 13 (1) (2022)
Christoph Kuppe, Ricardo Omar Ramirez Flores, Zhijian Li, Sikander Hayat, Rebecca T Levinson, Xian Liao, Monica T Hannani, Jovan Tanevski, Florian Wünnemann, James S Nagai, Maurice Halder, David Schumacher, Sylvia Menzel, Gideon Schäfer, Konrad Hoeft, Mingbo Cheng, Susanne Ziegler, Xiaoting Zhang, Fabian Peisker, Nadine Kaesler, Turgay Saritas, Yaoxian Xu, Astrid Kassner, Jan Gummert, Michiel Morshuis, Junedh M Amrute, Rogier J A Veltrop, Peter Boor, Karin Klingel, Linda W Van Laake, Aryan Vink, Remco M Hoogenboezem, Eric M J Bindels, Leon J Schurgers, Susanne Sattler, Denis Schapiro, Rebekka K Schneider, Kory J Lavine, Hendrik Milting, Ivan G Costa, Julio Saez-Rodriguez, Rafael Kramann
Spatial multi-omic map of human myocardial infarction. Nature 608 (7924) (2022)
Christian H Holland, Ricardo Omar Ramirez Flores, Maiju Myllys, Reham Hassan, Karolina Edlund, Ute Hofmann, Rosemarie Marchan, Cristina Cadenas, Jörg Reinders, Stefan Hoehme, Abdel-Latif Seddek, Steven Dooley, Verena Keitel, Patricio Godoy, Brigitte Begher-Tibbe, Christian Trautwein, Christian Rupp, Sebastian Mueller, Thomas Longerich, Jan G Hengstler, Julio Saez-Rodriguez, Ahmed Ghallab
Transcriptomic Cross-Species Analysis of Chronic Liver Disease Reveals Consistent Regulation Between Humans and Mice. Hepatology communications (2021)