Qianqian Song

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 37

Top Topics

Chronic Kidney Disease

Artificial Intelligence

Clinical Decision Support

Top Venues

Briefings in bioinformatics

The Journal of experimental medicine

Journal of clinical oncology : official journal of the American Society of Clinical Oncology

This page only lists publications with an associated author ORCID identifier.

Publications

Haoran Liu, Bahjat Fadi Marayati, David de la Cerda, Brendan Matthew Lemezis, Jieyu Gao, Qianqian Song, Minghan Chen, Ke Zhang Reid
The Cross-Regulation Between Set1, Clr4, and Lsd1/2 in Schizosaccharomyces pombe. PLoS genetics 20 (1) (2024)
Aishwarya Budhkar, Ziyang Tang, Xiang Liu, Xuhong Zhang, Jing Su, Qianqian Song
xSiGra: Explainable model for single-cell spatial data elucidation. bioRxiv : the preprint server for biology (2024)
Aishwarya Budhkar, Ziyang Tang, Xiang Liu, Xuhong Zhang, Jing Su, Qianqian Song
xSiGra: Explainable model for single-cell spatial data elucidation. bioRxiv : the preprint server for biology (2024)
Qing Wang, Yuzhou Feng, Yanfei Wang, Bo Li, Jianguo Wen, Xiaobo Zhou, Qianqian Song
AntiFormer: graph enhanced large language model for binding affinity prediction. Briefings in bioinformatics 25 (5) (2024)
Haoran Liu, Bahjat Fadi Marayati, David de la Cerda, Brendan Matthew Lemezis, Jieyu Gao, Qianqian Song, Minghan Chen, Ke Zhang Reid
The Cross-Regulation Between Set1, Clr4, and Lsd1/2 in Schizosaccharomyces pombe. PLoS genetics 20 (1) (2024)
Zuotian Li, Xiang Liu, Ziyang Tang, Nanxin Jin, Pengyue Zhang, Michael T Eadon, Qianqian Song, Yingjie V Chen, Jing Su
TrajVis: a visual clinical decision support system to translate artificial intelligence trajectory models in the precision management of chronic kidney disease. Journal of the American Medical Informatics Association : JAMIA (2024)
Aishwarya Budhkar, Ziyang Tang, Xiang Liu, Xuhong Zhang, Jing Su, Qianqian Song
xSiGra: explainable model for single-cell spatial data elucidation. Briefings in bioinformatics 25 (5) (2024)
Haoran Liu, Bahjat Fadi Marayati, David de la Cerda, Brendan Matthew Lemezis, Jieyu Gao, Qianqian Song, Minghan Chen, Ke Zhang Reid
The Cross-Regulation Between Set1, Clr4, and Lsd1/2 in Schizosaccharomyces pombe. PLoS genetics 20 (1) (2024)
Haoran Liu, Bahjat Fadi Marayati, David de la Cerda, Brendan Matthew Lemezis, Jieyu Gao, Qianqian Song, Minghan Chen, Ke Zhang Reid
The Cross-Regulation Between Set1, Clr4, and Lsd1/2 in Schizosaccharomyces pombe. PLoS genetics 20 (1) (2024)
Haoran Liu, Bahjat Fadi Marayati, David de la Cerda, Brendan Matthew Lemezis, Jieyu Gao, Qianqian Song, Minghan Chen, Ke Zhang Reid
The Cross-Regulation Between Set1, Clr4, and Lsd1/2 in Schizosaccharomyces pombe. PLoS genetics 20 (1) (2024)
Aishwarya Budhkar, Ziyang Tang, Xiang Liu, Xuhong Zhang, Jing Su, Qianqian Song
xSiGra: explainable model for single-cell spatial data elucidation. Briefings in bioinformatics 25 (5) (2024)
Aishwarya Budhkar, Ziyang Tang, Xiang Liu, Xuhong Zhang, Jing Su, Qianqian Song
xSiGra: explainable model for single-cell spatial data elucidation. Briefings in bioinformatics 25 (5) (2024)
Qing Wang, Yuzhou Feng, Yanfei Wang, Bo Li, Jianguo Wen, Xiaobo Zhou, Qianqian Song
AntiFormer: graph enhanced large language model for binding affinity prediction. Briefings in bioinformatics 25 (5) (2024)
Haoran Liu, Bahjat Fadi Marayati, David de la Cerda, Brendan Matthew Lemezis, Jieyu Gao, Qianqian Song, Minghan Chen, Ke Zhang Reid
The Cross-Regulation Between Set1, Clr4, and Lsd1/2 in Schizosaccharomyces pombe. PLoS genetics 20 (1) (2024)
Xiaona Liu, Qing Wang, Minghao Zhou, Yanfei Wang, Xuefeng Wang, Xiaobo Zhou, Qianqian Song
DrugFormer: Graph-Enhanced Language Model to Predict Drug Sensitivity. Advanced science (Weinheim, Baden-Wurttemberg, Germany) (2024)
Haoran Liu, Bahjat Fadi Marayati, David de la Cerda, Brendan Matthew Lemezis, Jieyu Gao, Qianqian Song, Minghan Chen, Ke Zhang Reid
The Cross-Regulation Between Set1, Clr4, and Lsd1/2 in Schizosaccharomyces pombe. PLoS genetics 20 (1) (2024)
Xiaona Liu, Jiahao Yi, Tina Li, Jianguo Wen, Kexin Huang, Jiajia Liu, Grant Wang, Pora Kim, Qianqian Song, Xiaobo Zhou
DRMref: comprehensive reference map of drug resistance mechanisms in human cancer. Nucleic acids research (2023)
Ronald J Bouch, Jing Zhang, Brandi C Miller, Caroline J Robbins, Timothy H Mosher, Wencheng Li, Sergey A Krupenko, Ravinder Nagpal, Jun Zhao, Richard S Bloomfeld, Yong Lu, Mikhail A Nikiforov, Qianqian Song, Zhiheng He
Distinct inflammatory Th17 subsets emerge in autoimmunity and infection. The Journal of experimental medicine 220 (10) (2023)
Ronald J Bouch, Jing Zhang, Brandi C Miller, Caroline J Robbins, Timothy H Mosher, Wencheng Li, Sergey A Krupenko, Ravinder Nagpal, Jun Zhao, Richard S Bloomfeld, Yong Lu, Mikhail A Nikiforov, Qianqian Song, Zhiheng He
Distinct inflammatory Th17 subsets emerge in autoimmunity and infection. The Journal of experimental medicine 220 (10) (2023)
Qianqian Song, Xiang Liu, Zuotian Li, Pengyue Zhang, Michael Eadon, Jing Su
DEPOT: graph learning delineates the roles of cancers in the progression trajectories of chronic kidney disease using electronic medical records. medRxiv : the preprint server for health sciences (2023)
Ziyang Tang, Zuotian Li, Tieying Hou, Tonglin Zhang, Baijian Yang, Jing Su, Qianqian Song
SiGra: single-cell spatial elucidation through an image-augmented graph transformer. Nature communications 14 (1) (2023)
Nephi A Walton, Radha Nagarajan, Chen Wang, Murat Sincan, Robert R Freimuth, David B Everman, Derek C Walton, Scott P McGrath, Dominick J Lemas, Panayiotis V Benos, Alexander V Alekseyenko, Qianqian Song, Ece Gamsiz Uzun, Casey Overby Taylor, Alper Uzun, Thomas Nate Person, Nadav Rappoport, Zhong-Ming Zhao, Marc S Williams
Enabling the clinical application of artificial intelligence in genomics: a perspective of the AMIA Genomics and Translational Bioinformatics Workgroup. Journal of the American Medical Informatics Association : JAMIA (2023)
Ronald J Bouch, Jing Zhang, Brandi C Miller, Caroline J Robbins, Timothy H Mosher, Wencheng Li, Sergey A Krupenko, Ravinder Nagpal, Jun Zhao, Richard S Bloomfeld, Yong Lu, Mikhail A Nikiforov, Qianqian Song, Zhiheng He
Distinct inflammatory Th17 subsets emerge in autoimmunity and infection. The Journal of experimental medicine 220 (10) (2023)
Ziyang Tang, Tonglin Zhang, Baijian Yang, Jing Su, Qianqian Song
spaCI: deciphering spatial cellular communications through adaptive graph model. Briefings in bioinformatics 24 (1) (2023)
Ziyang Tang, Tonglin Zhang, Baijian Yang, Jing Su, Qianqian Song
spaCI: deciphering spatial cellular communications through adaptive graph model. Briefings in bioinformatics 24 (1) (2023)
Ronald J Bouch, Jing Zhang, Brandi C Miller, Caroline J Robbins, Timothy H Mosher, Wencheng Li, Sergey A Krupenko, Ravinder Nagpal, Jun Zhao, Richard S Bloomfeld, Yong Lu, Mikhail A Nikiforov, Qianqian Song, Zhiheng He
Distinct inflammatory Th17 subsets emerge in autoimmunity and infection. The Journal of experimental medicine 220 (10) (2023)
Yunhan Jiang, Lina Song, Yizhu Lin, Pawel Nowialis, Qiongmei Gao, Tao Li, Bin Li, Xiaobo Mao, Qianqian Song, Chengguo Xing, Guangrong Zheng, Shuang Huang, Lingtao Jin
ROS-mediated SRMS activation confers platinum resistance in ovarian cancer. Oncogene (2023)
Ronald J Bouch, Jing Zhang, Brandi C Miller, Caroline J Robbins, Timothy H Mosher, Wencheng Li, Sergey A Krupenko, Ravinder Nagpal, Jun Zhao, Richard S Bloomfeld, Yong Lu, Mikhail A Nikiforov, Qianqian Song, Zhiheng He
Distinct inflammatory Th17 subsets emerge in autoimmunity and infection. The Journal of experimental medicine 220 (10) (2023)
Ziyang Tang, Xiang Liu, Zuotian Li, Tonglin Zhang, Baijian Yang, Jing Su, Qianqian Song
SpaRx: Elucidate single-cell spatial heterogeneity of drug responses for personalized treatment. bioRxiv : the preprint server for biology (2023)
Qianqian Song, Jimmy Ruiz, Fei Xing, Hui-Wen Lo, Lou Craddock, Ashok K Pullikuth, Lance D Miller, Michael H Soike, Stacey S O'Neill, Kounosuke Watabe, Michael D Chan, Jing Su
Single-cell sequencing reveals the landscape of the human brain metastatic microenvironment. Communications biology 6 (1) (2023)
Qianqian Song, Xuewei Zhu, Lingtao Jin, Minghan Chen, Wei Zhang, Jing Su
SMGR: a joint statistical method for integrative analysis of single-cell multi-omics data. NAR genomics and bioinformatics 4 (3) (2022)
Kyung W Yoo, Manish Kumar Yadav, Qianqian Song, Anthony Atala, Baisong Lu
Targeting DNA polymerase to DNA double-strand breaks reduces DNA deletion size and increases templated insertions generated by CRISPR/Cas9. Nucleic acids research 50 (7) (2022)
Qianqian Song, Benjamin A Bates, Yu Raymond Shao, Fang-Chi Hsu, Feifan Liu, Vithal Madhira, Amit Kumar Mitra, Timothy Bergquist, Ramakanth Kavuluru, Xiaochun Li, Noha Sharafeldin, Jing Su, Umit Topaloglu
Risk and Outcome of Breakthrough COVID-19 Infections in Vaccinated Patients With Cancer: Real-World Evidence From the National COVID Cohort Collaborative. Journal of clinical oncology : official journal of the American Society of Clinical Oncology 40 (13) (2022)
Ziyang Tang, Tonglin Zhang, Baijian Yang, Jing Su, Qianqian Song
spaCI: deciphering spatial cellular communications through adaptive graph model. Briefings in bioinformatics (2022)
Noha Sharafeldin, Benjamin A Bates, Qianqian Song, Vithal Madhira, Yao Yan, Sharlene Dong, Eileen Lee, Nathaniel Kuhrt, Yu Raymond Shao, Feifan Liu, Timothy Bergquist, Justin Guinney, Jing Su, Umit Topaloglu
Outcomes of COVID-19 in Patients With Cancer: Report From the National COVID Cohort Collaborative (N3C). Journal of clinical oncology : official journal of the American Society of Clinical Oncology 39 (20) (2021)
Noha Sharafeldin, Benjamin A Bates, Qianqian Song, Vithal Madhira, Yu Raymond Shao, Feifan Liu, Timothy Bergquist, Jing Su, Umit Topaloglu
Reply to K. Takada et al. Journal of clinical oncology : official journal of the American Society of Clinical Oncology 39 (35) (2021)
Qianqian Song, Jing Su
DSTG: deconvoluting spatial transcriptomics data through graph-based artificial intelligence. Briefings in bioinformatics 22 (5) (2021)