Ralf Koebnik (R Koebnik)

ResearcherID Scopus Author ID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 25

Top Topics

Escherichia Coli

Antimicrobial Resistance

Genetic Diversity

Top Venues

Genome announcements

Molecular plant-microbe interactions : MPMI

This page only lists publications with an associated author ORCID identifier.

Publications

Joana Costa, Joël F Pothier, Eran Bosis, Jens Boch, Kölliker Roland, Ralf Koebnik
A Community-Curated DokuWiki Resource on Diagnostics, Diversity, Pathogenicity, and Genetic Control of Xanthomonads. Molecular plant-microbe interactions : MPMI (2024)
Joana Costa, Joël F Pothier, Eran Bosis, Jens Boch, Kölliker Roland, Ralf Koebnik
A Community-Curated DokuWiki Resource on Diagnostics, Diversity, Pathogenicity, and Genetic Control of Xanthomonads. Molecular plant-microbe interactions : MPMI 37 (3) (2024)
Joana Costa, Joël F Pothier, Eran Bosis, Jens Boch, Kölliker Roland, Ralf Koebnik
A Community-Curated DokuWiki Resource on Diagnostics, Diversity, Pathogenicity, and Genetic Control of Xanthomonads. Molecular plant-microbe interactions : MPMI 37 (3) (2024)
Carlos Andrés Zárate-Chaves, Corinne Audran, César Augusto Medina Culma, Aline Escalon, Stéphanie Javegny, Lionel Gagnevin, Emilie Thomas, Léa-Lou Pimparé, Camilo E López, Jonathan M Jacobs, Laurent D Noël, Ralf Koebnik, Adriana Jimena Bernal, Boris Szurek
CRISPRi in Xanthomonas demonstrates functional convergence of transcription activator-like effectors in two divergent pathogens. The New phytologist (2023)
Nay C Dia, Lucas Morinière, Bart Cottyn, Eduardo Bernal, Jonathan M Jacobs, Ralf Koebnik, Ebrahim Osdaghi, Neha Potnis, Joël F Pothier
Xanthomonas hortorum - beyond gardens: Current taxonomy, genomics, and virulence repertoires. Molecular plant pathology 23 (5) (2022)
Felipe Clavijo, Claudia Barrera, Aleksander Benčič, Valentina Croce, Jonathan M Jacobs, Adriana J Bernal, Ralf Koebnik, Veronica Roman-Reyna
Complete Genome Sequence Resource for Xanthomonas translucens pv. undulosa MAI5034, a Wheat Pathogen from Uruguay. Phytopathology 112 (9) (2022)
Hamzeh Mafakheri, S Mohsen Taghavi, Sadegh Zarei, Touraj Rahimi, Mohammad Sadegh Hasannezhad, Perrine Portier, Marion Fischer-Le Saux, Ivica Dimkić, Ralf Koebnik, Kuzmanović Nemanja, Ebrahim Osdaghi
Phenotypic and Molecular-Phylogenetic Analyses Reveal Distinct Features of Crown Gall-Associated Xanthomonas Strains. Microbiology spectrum 10 (1) (2022)
Sadegh Zarei, S Mohsen Taghavi, Touraj Rahimi, Hamzeh Mafakheri, Neha Potnis, Ralf Koebnik, Marion Fischer-Le Saux, Joël F Pothier, Ana Palacio Bielsa, Jaime Cubero, Perrine Portier, Marie-Agnes Jacques, Ebrahim Osdaghi
Taxonomic Refinement of Xanthomonas arboricola . Phytopathology 112 (8) (2022)
Ninon Bellanger, Alexis Dereeper, Ralf Koebnik
Clustered Regularly Interspaced Short Palindromic Repeats in Xanthomonas citri -Witnesses to a Global Expansion of a Bacterial Pathogen over Time. Microorganisms 10 (9) (2022)
Joana Costa, Joël F Pothier, Jens Boch, Emilio Stefani, Ralf Koebnik
Integrating Science on Xanthomonas and Xylella for Integrated Plant Disease Management. Microorganisms 11 (1) (2022)
Joana Costa, Joël F Pothier, Jens Boch, Emilio Stefani, Ralf Koebnik
Integrating Science on Xanthomonas and Xylella for Integrated Plant Disease Management. Microorganisms 11 (1) (2022)
Songül Erken Meral, Shaheen Bibi, Carlos Andrés Díaz Rodríguez, Jelena Menković, Adriana Jimena Bernal, Ralf Koebnik
Complete Genome Sequence of Xanthomonas campestris pv. campestris SB80, a Race 4 Strain Isolated from White Head Cabbage in Turkey. Microbiology resource announcements 11 (3) (2022)
Joana Costa, Joël F Pothier, Jens Boch, Emilio Stefani, Marie-Agnès Jacques, Vittoria Catara, Ralf Koebnik
Integrating science on Xanthomonadaceae for sustainable plant disease management in Europe. Molecular plant pathology 22 (12) (2022)
Kossi Kini, Raoul Agnimonhan, Rachelle Dossa, Drissa Silué, Ralf Koebnik
Genomics-Informed Multiplex PCR Scheme for Rapid Identification of Rice-Associated Bacteria of the Genus Pantoea. Plant disease 105 (9) (2021)
Vittoria Catara, Jaime Cubero, Joël F Pothier, Eran Bosis, Claude Bragard, Edyta Đermić, Maria C Holeva, Marie-Agnès Jacques, Francoise Petter, Olivier Pruvost, Isabelle Robène, David John Studholme, Fernando Tavares, Joana G Vicente, Ralf Koebnik, Joana Costa
Trends in Molecular Diagnosis and Diversity Studies for Phytosanitary Regulated Xanthomonas. Microorganisms 9 (4) (2021)
Ralf Koebnik, Daiva Burokiene, Claude Bragard, Christine Chang, Marion Fischer-Le Saux, Roland Kölliker, Jillian M Lang, Jan E Leach, Emily K Luna, Perrine Portier, Angeliki Sagia, Janet Ziegle, Stephen P Cohen, Jonathan M Jacobs
The Complete Genome Sequence of Xanthomonas theicola, the Causal Agent of Canker on Tea Plants, Reveals Novel Secretion Systems in Clade-1 Xanthomonads. Phytopathology 111 (4) (2021)
Taca Vancheva, Nevena Bogatzevska, Penka Moncheva, Sasa Mitrev, Christian Vernière, Ralf Koebnik
Molecular Epidemiology of Xanthomonas euvesicatoria Strains from the Balkan Peninsula Revealed by a New Multiple-Locus Variable-Number Tandem-Repeat Analysis Scheme. Microorganisms 9 (3) (2021)
Emile Gluck-Thaler, Aude Cerutti, Álvaro L Pérez-Quintero, Jules Butchacas, Veronica Roman-Reyna, Vishnu Narayanan Madhavan, Deepak Shantharaj, Marcus V Merfa, Céline Pesce, Alain Jauneau, Taca Vancheva, Jillian M Lang, Caitilyn Allen, Valerie Verdier, Lionel Gagnevin, Boris Szurek, Gregg T Beckham, Leonardo De La Fuente, Hitendra Kumar Patel, Ramesh V Sonti, Claude Bragard, Jan E Leach, Laurent D Noël, Jason C Slot, Ralf Koebnik, Jonathan M Jacobs
Repeated gain and loss of a single gene modulates the evolution of vascular plant pathogen lifestyles. Science advances 6 (46) (2020)
Kossi Kini, Pierre Lefeuvre, Lucie Poulin, Drissa Silué, Ralf Koebnik
Genome Resources of Three West African Strains of Pantoea ananatis Causing Bacterial Blight and Grain Discoloration of Rice. Phytopathology 110 (9) (2020)
Kwanho Jeong, Alejandra Muñoz-Bodnar, Nathalia Arias Rojas, Lucie Poulin, Luis Miguel Rodriguez-R, Lionel Gagnevin, Christian Vernière, Olivier Pruvost, Ralf Koebnik
CRISPR elements provide a new framework for the genealogy of the citrus canker pathogen Xanthomonas citri pv. citri. BMC genomics 20 (1) (2019)
Leidy Rache, Laurence Blondin, Carolina Flores, Cesar Trujillo, Boris Szurek, Silvia Restrepo Restrepo, Ralf Koebnik, Adriana Bernal, Christian Vernière
An Optimized Microsatellite Scheme for Assessing Populations of Xanthomonas phaseoli pv. manihotis. Phytopathology 109 (5) (2019)
Tuan T Tran, Alvaro L Pérez-Quintero, Issa Wonni, Sara C D Carpenter, Yanhua Yu, Li Wang, Jan E Leach, Valerie Verdier, Sébastien Cunnac, Adam J Bogdanove, Ralf Koebnik, Mathilde Hutin, Boris Szurek
Functional analysis of African Xanthomonas oryzae pv. oryzae TALomes reveals a new susceptibility gene in bacterial leaf blight of rice. PLoS pathogens 14 (6) (2018)
Daniel Garcia-Seco, M Chiapello, M Bracale, C Pesce, P Bagnaresi, E Dubois, L Moulin, C Vannini, Ralf Koebnik
Transcriptome and proteome analysis reveal new insight into proximal and distal responses of wheat to foliar infection by Xanthomonas translucens. Scientific reports 7 (1) (2017)
Ebrahim Osdaghi, Natalia Forero Serna, Stephanie Bolot, Marion Fischer-Le Saux, Marie-Agnès Jacques, Perrine Portier, Sébastien Carrère, Ralf Koebnik
High-Quality Draft Genome Sequence of Curtobacterium sp. Strain Ferrero. Genome announcements 5 (48) (2017)
I Robène, S Bolot, O Pruvost, M Arlat, L D Noël, S Carrère, M-A Jacques, Ralf Koebnik, Lionel Gagnevin
High-Quality Draft Genome Sequences of Two Xanthomonas Pathotype Strains Infecting Aroid Plants. Genome announcements 4 (5) (2016)
Céline Pesce, Stéphanie Bolot, Edwige Berthelot, Claude Bragard, Sébastien Cunnac, Marion Fischer-Le Saux, Perrine Portier, Matthieu Arlat, Lionel Gagnevin, Marie-Agnès Jacques, Laurent D Noël, Sébastien Carrère, Ralf Koebnik
Draft Genome Sequence of Xanthomonas translucens pv. graminis Pathotype Strain CFBP 2053. Genome announcements 3 (5) (2015)
Céline Pesce, Stéphanie Bolot, Sébastien Cunnac, Perrine Portier, Marion Fischer-Le Saux, Marie-Agnès Jacques, Lionel Gagnevin, Matthieu Arlat, Laurent D Noël, Sébastien Carrère, Claude Bragard, Ralf Koebnik
High-Quality Draft Genome Sequence of the Xanthomonas translucens pv. cerealis Pathotype Strain CFBP 2541. Genome announcements 3 (1) (2015)
Taca Vancheva, Pierre Lefeuvre, Nevena Bogatzevska, Penka Moncheva, Ralf Koebnik
Draft Genome Sequences of Two Xanthomonas euvesicatoria Strains from the Balkan Peninsula. Genome announcements 3 (1) (2015)
Taca Vancheva, Nevena Bogatzevska, Penka Moncheva, Pierre Lefeuvre, Ralf Koebnik
Draft Genome Sequences of Two Xanthomonas vesicatoria Strains from the Balkan Peninsula. Genome announcements 3 (1) (2015)
A Indiana, M Briand, M Arlat, Lionel Gagnevin, Ralf Koebnik, L D Noël, P Portier, A Darrasse, M A Jacques
Draft Genome Sequence of the Flagellated Xanthomonas fuscans subsp. fuscans Strain CFBP 4884. Genome announcements 2 (5) (2014)
L Poulin, P Grygiel, M Magne, Lionel Gagnevin, L M Rodriguez-R, N Forero Serna, S Zhao, M El Rafii, S Dao, C Tekete, I Wonni, O Koita, O Pruvost, V Verdier, C Vernière, Ralf Koebnik
New multilocus variable-number tandem-repeat analysis tool for surveillance and local epidemiology of bacterial leaf blight and bacterial leaf streak of rice caused by Xanthomonas oryzae. Applied and environmental microbiology 81 (2) (2014)
Lionel Gagnevin, S Bolot, J L Gordon, O Pruvost, C Vernière, I Robène, M Arlat, L D Noël, S Carrère, M-A Jacques, Ralf Koebnik
Draft Genome Sequence of Xanthomonas axonopodis pv. allii Strain CFBP 6369. Genome announcements 2 (4) (2014)