Ramanathan Sowdhamini (R Sowdhamini, Sowdhamini Ramanathan)

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 23

Top Topics

Molecular Dynamics Simulations

Drug Administration

Protein Protein

Top Venues

Molecular biology and evolution

Bioinformatics and biology insights

Database : the journal of biological databases and curation

This page only lists publications with an associated author ORCID identifier.

Publications

Shailya Verma, Revathy Menon, Ramanathan Sowdhamini
Structural insights into the role of deleterious mutations at the dimeric interface of Toll-like receptor interferon-β related adaptor protein. Proteins (2024)
Seemadri Subhadarshini, Himani Tandon, Narayanaswamy Srinivasan, Ramanathan Sowdhamini
Normal Mode Analysis Elicits Conformational Shifts in Proteins at Both Proximal and Distal Regions to the Phosphosite Stemming from Single-Site Phosphorylation. ACS omega 9 (23) (2024)
Seemadri Subhadarshini, Himani Tandon, Narayanaswamy Srinivasan, Ramanathan Sowdhamini
Normal Mode Analysis Elicits Conformational Shifts in Proteins at Both Proximal and Distal Regions to the Phosphosite Stemming from Single-Site Phosphorylation. ACS omega 9 (23) (2024)
Abhishek Sharma, Sudhir Krishna, Ramanathan Sowdhamini
Bioinformatics analysis of mutations sheds light on the evolution of Dengue NS1 protein with implications in the identification of potential functional and druggable sites. Molecular biology and evolution (2023)
Vasam Manjveekar Prabantu, Himani Tandon, Sankaran Sandhya, Ramanathan Sowdhamini, Narayanaswamy Srinivasan
The alteration of structural network upon transient association between proteins studied using graph theory. Proteins (2023)
Abhishek Sharma, Sudhir Krishna, Ramanathan Sowdhamini
Bioinformatics Analysis of Mutations Sheds Light on the Evolution of Dengue NS1 Protein With Implications in the Identification of Potential Functional and Druggable Sites. Molecular biology and evolution 40 (3) (2023)
Jayadevan Parvathy, Arangasamy Yazhini, Narayanaswamy Srinivasan, Ramanathan Sowdhamini
Interfacial residues in protein-protein complexes are in the eyes of the beholder. Proteins (2023)
Swayam Prakash Das Sidhanta, Ramanathan Sowdhamini, Narayanaswamy Srinivasan
Comparative analysis of permanent and transient domain-domain interactions in multi-domain proteins. Proteins (2023)
Abhishek Sharma, Sudhir Krishna, Ramanathan Sowdhamini
Bioinformatics Analysis of Mutations Sheds Light on the Evolution of Dengue NS1 Protein With Implications in the Identification of Potential Functional and Druggable Sites. Molecular biology and evolution 40 (3) (2023)
Teerna Bhattacharyya, Soumya Nayak, Smit Goswami, Vasundhara Gadiyaram, Oommen K Mathew, Ramanathan Sowdhamini
PASS2.7: a database containing structure-based sequence alignments and associated features of protein domain superfamilies from SCOPe. Database : the journal of biological databases and curation 2022 (2022)
Neha V Kalmankar, Murugavel Pavalam, Sowmya Indrakumar, Narayanaswamy Srinivasan, Ramanathan Sowdhamini
DSDBASE 2.0: updated version of DiSulphide dataBASE, a database on disulphide bonds in proteins. Database : the journal of biological databases and curation 2022 (2022)
Shailya Verma, Ramanathan Sowdhamini
A genome-wide search of Toll/Interleukin-1 receptor (TIR) domain-containing adapter molecule (TICAM) and their evolutionary divergence from other TIR domain containing proteins. Biology direct 17 (1) (2022)
Nagarajan Naveenkumar, Vasam Manjveekar Prabantu, Sneha Vishwanath, Ramanathan Sowdhamini, Narayanaswamy Srinivasan
Structures of distantly related interacting protein homologs are less divergent than non-interacting homologs. FEBS open bio 12 (12) (2022)
Snehal Dilip Karpe, Vikas Tiwari, Ramanathan Sowdhamini
InsectOR-Webserver for sensitive identification of insect olfactory receptor genes from non-model genomes. PloS one 16 (1) (2021)
Asad Ahmed, Bhavika Mam, Ramanathan Sowdhamini
DEELIG: A Deep Learning Approach to Predict Protein-Ligand Binding Affinity. Bioinformatics and biology insights 15 (2021)
Neha V Kalmankar, Hrudya Hari, Ramanathan Sowdhamini, Radhika Venkatesan
Disulfide-Rich Cyclic Peptides from Clitoria ternatea Protect against β-Amyloid Toxicity and Oxidative Stress in Transgenic Caenorhabditis elegans. Journal of medicinal chemistry 64 (11) (2021)
K Harini, S Jayashree, Vikas Tiwari, Sneha Vishwanath, Ramanathan Sowdhamini
Ligand Docking Methods to Recognize Allosteric Inhibitors for G-Protein-Coupled Receptors. Bioinformatics and biology insights 15 (2021)
Lavanyaa Manjunath, David Coombes, James Davies, Mugdha Dhurandhar, Vikas R Tiwari, Renwick C J Dobson, Ramanathan Sowdhamini, S Ramaswamy, Sucharita Bose
Quaternary variations in the structural assembly of N-acetylglucosamine-6-phosphate deacetylase from Pasteurella multocida. Proteins (2020)
Teerna Bhattacharyya, Ramanathan Sowdhamini
Genome-Wide Search for Tyrosine Phosphatases in the Human Genome Through Computational Approaches Leads to the Discovery of Few New Domain Architectures. Evolutionary bioinformatics online 15 (2019)
Pritha Ghosh, Adwait Joshi, Niang Guita, Bernard Offmann, Ramanathan Sowdhamini
EcRBPome: a comprehensive database of all known E. coli RNA-binding proteins. BMC genomics 20 (1) (2019)
Atul Kumar Upadhyay, Ramanathan Sowdhamini
Genome-Wide Analysis of Domain-Swap Predicted Products in the Genome of Anti-Stress Medicinal Plant: Ocimum tenuiflorum. Bioinformatics and biology insights 13 (2019)
Jarjapu Mahita, Ramanathan Sowdhamini
Probing subtle conformational changes induced by phosphorylation and point mutations in the TIR domains of TLR2 and TLR3. Proteins 86 (5) (2018)
Jarjapu Mahita, Ramanathan Sowdhamini
Investigating the effect of key mutations on the conformational dynamics of toll-like receptor dimers through molecular dynamics simulations and protein structure networks. Proteins 86 (4) (2018)