Mandar S Deshpande (Mandar Deshpande)

Publication Activity (10 Years)

Years Active: 2015-2022
Publications (10 Years): 6

Top Topics

Aortic Valve Replacement

Molecular Docking

Top Venues

Nucleic acids research

Acta crystallographica. Section D, Structural biology

This page only lists publications with an associated author ORCID identifier.

Publications

Mihaly Varadi, Sreenath Nair, Ian Sillitoe, Gerardo Tauriello, Stephen Anyango, Stefan Bienert, Clemente Borges, Mandar S Deshpande, Tim Green, Demis Hassabis, Andras Hatos, Tamás Hegedűs, Maarten L Hekkelman, Robbie P Joosten, John M Jumper, Agata Laydon, Dmitry S Molodenskiy, Damiano Piovesan, Edoardo Salladini, Steven L Salzberg, Markus J Sommer, Martin Steinegger, Erzsebet Suhajda, Dmitri I Svergun, Luiggi Tenorio-Ku, Silvio C E Tosatto, Kathryn Tunyasuvunakool, Andrew Mark Waterhouse, Augustin Žídek, Torsten Schwede, Christine A Orengo, Sameer Velankar
3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources. GigaScience 11 (2022)
Ida de Vries, Tim Kwakman, Xiang-Jun Lu, Maarten L Hekkelman, Mandar S Deshpande, Sameer Velankar, Anastassis Perrakis, Robbie P Joosten
New restraints and validation approaches for nucleic acid structures in PDB-REDO. Acta crystallographica. Section D, Structural biology 77 (Pt 9) (2021)
Mihaly Varadi, Stephen Anyango, Mandar S Deshpande, Sreenath Nair, Cindy Natassia, Galabina Yordanova, David Yuan, Oana Stroe, Gemma Wood, Agata Laydon, Augustin Žídek, Tim Green, Kathryn Tunyasuvunakool, Stig Petersen, John Jumper, Ellen Clancy, Richard Green, Ankur Vora, Mira Lutfi, Michael Figurnov, Andrew Cowie, Nicole Hobbs, Pushmeet Kohli, Gerard Kleywegt, Ewan Birney, Demis Hassabis, Sameer Velankar
AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models. Nucleic acids research (2021)
David Sehnal, Sebastian Bittrich, Mandar S Deshpande, Radka Svobodová, Karel Berka, Václav Bazgier, Sameer Velankar, Stephen K Burley, Jaroslav Koča, Alexander S Rose
Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures. Nucleic acids research 49 (W1) (2021)
David Sehnal, Mandar S Deshpande, Radka Svobodová Vařeková, Saqib Mir, Karel Berka, Adam Midlik, Lukáš Pravda, Sameer Velankar, Jaroslav Koča
LiteMol suite: interactive web-based visualization of large-scale macromolecular structure data. Nature methods 14 (12) (2019)
Sameer Velankar, Glen van Ginkel, Younes Alhroub, Gary M Battle, John M Berrisford, Matthew J Conroy, Jose M Dana, Swanand P Gore, Aleksandras Gutmanas, Pauline Haslam, Pieter M S Hendrickx, Ingvar Lagerstedt, Saqib Mir, Manuel A Fernandez Montecelo, Abhik Mukhopadhyay, Thomas J Oldfield, Ardan Patwardhan, Eduardo Sanz-García, Sanchayita Sen, Robert A Slowley, Michael E Wainwright, Mandar S Deshpande, Andrii Iudin, Gaurav Sahni, Jose Salavert Torres, Miriam Hirshberg, Lora Mak, Nurul Nadzirin, David R Armstrong, Alice R Clark, Oliver S Smart, Paul K Korir, Gerard J Kleywegt
PDBe: improved accessibility of macromolecular structure data from PDB and EMDB. Nucleic acids research 44 (D1) (2015)